Prupe.2G077500_v2.0.a1

Pre-mRNA-splicing factor ATP-dependent RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000671
Physical Location & Seq
Reverse (-)
11963394 .. 11965311
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G077500.1

Sequence Viewer

Length: 627 bp
ATGATTCAGACTGGTAATATTTTTTACAGGCCTAGGGAAAAACAAGCCCAGGCAGATCAGAAGAGAGCCAAGTTTTTCCAGCCAGAGGGAGATCATCTGACTTTACTTGCAGTCTATGAGGCATGGAAAGCTAAGAATTTTTCAGGGCCATGGTGTTTTGAGAATTTTGTTCAGTCTCGATCCTTGAGGAGGGCACAGGATGTCAGAAAACAGCTTCTCAGCATCATGGACAAGTATAAACTAGATGTTGTCAGTGCTGGAAAGAATTTTACAAAGATCAGGAAGGCAATTACAGCAGGGTTTTTCTTCCACGGTGCTAGAAAGGACCCGCAGGAGGGTTATAGAACCCTAGTGGAGAACCAACCAGTTTATATACACCCAAGCAGCGCCCTCTTCCAGAGACAACCAGATTGGGTGATCTACCATGAGCTGGTTATGACCACAAAGGAGTACATGCGCGAGGTGACGGTCGTCGACCCCAAATGGCTTGTGGAACTGGCACCCAGGTTCTTCAAAGTGGCAGATCCCACCAAGATGAGCAAGCGCAAGCGTCAAGAACGTATTGAACCGCTATATGATAGATACCATGAACCTAACTCTTGGCGTCTTAGTAAGCGACGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

209

Amino Acids

24.8

Weight (kDa)

9.99

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 499
AccB7I CCANNNNNTGG 1 cut(s) 430
AccI GTMKAC 1 cut(s) 474
AccII CGCG 1 cut(s) 459
AciI CCGC 2 cut(s) 329, 569
AclWI GGATC 2 cut(s) 174, 518
AcsI RAATTY 3 cut(s) 136, 163, 265
AcyI GRCGYC 1 cut(s) 604
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 5 cut(s) 85, 189, 334, 335, 430
AgsI TTSAA 2 cut(s) 514, 566
AjiI CACGTC 1 cut(s) 620
AjnI CCWGG 2 cut(s) 48, 503
AluBI AGCT 3 cut(s) 131, 214, 430
AluI AGCT 3 cut(s) 131, 214, 430
Alw26I GTCTC 2 cut(s) 180, 394
AlwI GGATC 2 cut(s) 174, 518
AoxI GGCC 2 cut(s) 29, 146
ApeKI GCWGC 1 cut(s) 384
ApoI RAATTY 3 cut(s) 136, 163, 265
AspA2I CCTAGG 1 cut(s) 32
AspLEI GCGC 3 cut(s) 389, 459, 546
AspS9I GGNCC 2 cut(s) 146, 325
AsuHPI GGTGA 2 cut(s) 427, 475
AvaII GGWCC 1 cut(s) 325
AvrII CCTAGG 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 396
BciT130I CCWGG 2 cut(s) 50, 505
BcoDI GTCTC 2 cut(s) 180, 394
BfaI CTAG 4 cut(s) 33, 242, 318, 350
BfoI RGCGCY 1 cut(s) 390
BisI GCNGC 1 cut(s) 385
BlnI CCTAGG 1 cut(s) 32
BlsI GCNGC 1 cut(s) 386
Bme1390I CCNGG 2 cut(s) 50, 505
Bme18I GGWCC 1 cut(s) 325
BmgBI CACGTC 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 146, 325
BmiI GGNNCC 2 cut(s) 327, 501
BmrFI CCNGG 2 cut(s) 50, 505
BmsI GCATC 1 cut(s) 231
BoxI GACNNNNGTC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 604
BsaJI CCNNGG 5 cut(s) 32, 48, 149, 310, 503
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 189, 334, 335, 430
Bse1I ACTGG 3 cut(s) 16, 365, 501
BseBI CCWGG 2 cut(s) 50, 505
BseDI CCNNGG 5 cut(s) 32, 48, 149, 310, 503
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 5 cut(s) 85, 189, 334, 335, 430
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 3 cut(s) 16, 365, 501
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 459
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 2 cut(s) 31, 148
BshNI GGYRCC 1 cut(s) 499
BsiEI CGRYCG 1 cut(s) 471
BslI CCNNNNNNNGG 5 cut(s) 85, 189, 334, 335, 430
BsmAI GTCTC 2 cut(s) 180, 394
BsnI GGCC 2 cut(s) 31, 148
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 6 cut(s) 55, 91, 179, 276, 417, 523
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 2 cut(s) 329, 569
BspANI GGCC 2 cut(s) 31, 148
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 327, 501
BspPI GGATC 2 cut(s) 174, 518
BspT107I GGYRCC 1 cut(s) 499
BsrI ACTGG 3 cut(s) 16, 365, 501
BssECI CCNNGG 5 cut(s) 32, 48, 149, 310, 503
BssMI GATC 6 cut(s) 55, 91, 179, 276, 417, 523
BssNI GRCGYC 1 cut(s) 604
BssT1I CCWWGG 2 cut(s) 32, 149
Bst2UI CCWGG 2 cut(s) 50, 505
Bst4CI ACNGT 2 cut(s) 314, 469
Bst6I CTCTTC 2 cut(s) 56, 398
BstACI GRCGYC 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 542, 548
BstDEI CTNAG 3 cut(s) 132, 218, 608
BstDSI CCRYGG 2 cut(s) 149, 310
BstENI CCTNNNNNAGG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 3 cut(s) 389, 459, 546
BstKTI GATC 6 cut(s) 58, 94, 182, 279, 420, 526
BstMAI GTCTC 2 cut(s) 180, 394
BstMBI GATC 6 cut(s) 55, 91, 179, 276, 417, 523
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 2 cut(s) 128, 293
BstNI CCWGG 2 cut(s) 50, 505
BstNSI RCATGY 1 cut(s) 457
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 48, 503
BstSLI GKGCMC 1 cut(s) 196
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 2 cut(s) 31, 148
BtgI CCRYGG 2 cut(s) 149, 310
BtrI CACGTC 1 cut(s) 620
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 542, 548
CfoI GCGC 3 cut(s) 389, 459, 546
Cfr13I GGNCC 2 cut(s) 146, 325
CseI GACGC 2 cut(s) 539, 593
Csp6I GTAC 1 cut(s) 451
CviAII CATG 6 cut(s) 123, 150, 226, 425, 454, 587
CviJI RGCY 9 cut(s) 31, 47, 68, 82, 131, 148, 214, 430, 487
CviKI_1 RGCY 9 cut(s) 31, 47, 68, 82, 131, 148, 214, 430, 487
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 3 cut(s) 132, 218, 608
DpnI GATC 6 cut(s) 57, 93, 181, 278, 419, 525
DpnII GATC 6 cut(s) 55, 91, 179, 276, 417, 523
Eam1104I CTCTTC 2 cut(s) 56, 398
EarI CTCTTC 2 cut(s) 56, 398
Eco130I CCWWGG 2 cut(s) 32, 149
Eco147I AGGCCT 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 325
EcoNI CCTNNNNNAGG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 48, 503
EcoT14I CCWWGG 2 cut(s) 32, 149
ErhI CCWWGG 2 cut(s) 32, 149
FaeI CATG 6 cut(s) 126, 153, 229, 428, 457, 590
FatI CATG 6 cut(s) 122, 149, 225, 424, 453, 586
FauI CCCGC 1 cut(s) 336
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 385
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 4 cut(s) 33, 242, 318, 350
GlaI GCGC 3 cut(s) 388, 458, 545
GluI GCNGC 1 cut(s) 385
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 2 cut(s) 31, 148
HgaI GACGC 2 cut(s) 539, 593
HhaI GCGC 3 cut(s) 389, 459, 546
Hin1I GRCGYC 1 cut(s) 604
Hin1II CATG 6 cut(s) 126, 153, 229, 428, 457, 590
Hin6I GCGC 3 cut(s) 387, 457, 544
HinP1I GCGC 3 cut(s) 387, 457, 544
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 1 cut(s) 4
HphI GGTGA 2 cut(s) 427, 475
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 4 cut(s) 9, 60, 99, 206
Hpy188III TCNNGA 4 cut(s) 177, 280, 397, 554
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 2 cut(s) 476, 621
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 314, 469
HpyCH4IV ACGT 2 cut(s) 559, 619
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 293
HpyF3I CTNAG 3 cut(s) 132, 218, 608
HpySE526I ACGT 2 cut(s) 559, 619
Hsp92I GRCGYC 1 cut(s) 604
Hsp92II CATG 6 cut(s) 126, 153, 229, 428, 457, 590
HspAI GCGC 3 cut(s) 387, 457, 544
Kzo9I GATC 6 cut(s) 55, 91, 179, 276, 417, 523
Lsp1109I GCAGC 1 cut(s) 396
LweI GCATC 1 cut(s) 231
MaeI CTAG 4 cut(s) 33, 242, 318, 350
MaeII ACGT 2 cut(s) 559, 619
MaeIII GTNAC 1 cut(s) 463
MalI GATC 6 cut(s) 57, 93, 181, 278, 419, 525
MboI GATC 6 cut(s) 55, 91, 179, 276, 417, 523
MboII GAAGA 4 cut(s) 73, 298, 385, 502
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 4 cut(s) 136, 163, 265, 288
MnlI CCTC 7 cut(s) 79, 112, 180, 183, 328, 401, 454
MslI CAYNNNNRTG 1 cut(s) 533
MspR9I CCNGG 2 cut(s) 50, 505
MvaI CCWGG 2 cut(s) 50, 505
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 2 cut(s) 128, 293
NcoI CCATGG 1 cut(s) 149
NdeII GATC 6 cut(s) 55, 91, 179, 276, 417, 523
NlaIII CATG 6 cut(s) 126, 153, 229, 428, 457, 590
NlaIV GGNNCC 2 cut(s) 327, 501
NmuCI GTSAC 1 cut(s) 463
NspI RCATGY 1 cut(s) 457
PceI AGGCCT 1 cut(s) 31
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 430
PkrI GCNGC 1 cut(s) 386
PpuMI RGGWCCY 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 470
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 2 cut(s) 48, 503
PspGI CCWGG 2 cut(s) 48, 503
PspN4I GGNNCC 2 cut(s) 327, 501
PspPI GGNCC 2 cut(s) 146, 325
PspPPI RGGWCCY 1 cut(s) 325
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 533
SalI GTCGAC 1 cut(s) 473
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 6 cut(s) 55, 91, 179, 276, 417, 523
Sau96I GGNCC 2 cut(s) 146, 325
ScrFI CCNGG 2 cut(s) 50, 505
SduI GDGCHC 1 cut(s) 196
SetI ASST 8 cut(s) 133, 216, 432, 465, 509, 562, 595, 622
SfaNI GCATC 1 cut(s) 231
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 4 cut(s) 136, 163, 265, 288
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 2 cut(s) 329, 569
SspI AATATT 1 cut(s) 19
SspMI CTAG 4 cut(s) 33, 242, 318, 350
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 2 cut(s) 48, 503
StyI CCWWGG 2 cut(s) 32, 149
TaaI ACNGT 2 cut(s) 314, 469
TaiI ACGT 2 cut(s) 562, 622
TaqI TCGA 2 cut(s) 178, 474
TasI AATT 4 cut(s) 136, 163, 265, 288
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 384
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 603
TspRI CASTG 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 325
XagI CCTNNNNNAGG 1 cut(s) 187
XapI RAATTY 3 cut(s) 136, 163, 265
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmaJI CCTAGG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 4 cut(s) 33, 242, 318, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.