Prupe.1G082300_v2.0.a1

Pre-mRNA-splicing factor ATP-dependent RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000671
Physical Location & Seq
Reverse (-)
6094168 .. 6097418
3251 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G082300.1

Sequence Viewer

Length: 2679 bp
ATGGGTCGAAAGTGTGAGGCCGTGGACGATTTCCGTGCAAAGTTAAAGCAAAACGGAGCAAACATGCCTGAATATCTCCTGCATATATTGTTGGAGATCATTCACAACATTTTTCCTCCAAAAAAGGCTTCTCAGAAGCGCAGGGACAGCCCGGCCATGGCGATCACCGATGCTATGCAAATTCATAGAGATAGTAAAGAAGAAGAAAAAAGGAGCAAGAGGCAGAGGGTTAACAATGGTTATGAAGGGATCGCCTCTGGTGTTTTTGGGGCTGCAACATATGATGATGAAGTTGGATTGCGAAATCGAGAAGAGGATTTCGGGGAAGAGATTGAAATGGAGCTGGATGAGGACCCATTAGAACTTCTGCGTGGAGTCTTATCAATTGATAGGTCACCTGTTAAGATTGTCAAGAACCCAATTGGGTCATTGAGCCGTGCAGCTGCACTTCAGTCTGCGCTTCAAAAGGAGGGTAGAGAAATAAGAAAAGTGCAAGAAAGAATGAAGCGTAATTCAATTCCAATGGATCTTAATCGTGCTTGGGAAGACCCTATGGCAGAGAGAGGTGATAGATATCTCGCACAAGAACTTAGGGATGCTGCTGGCTTTTCGGCTTTCGACATTGACAAGCATGAGTGGAAGAAGAGTGCTTATGAAGGAGCCCTGAGTTTTGGGCAGAGATCAAGCCTTTCCATTCTTGAACGGCGTCAGAGCTTACCAATCTACAAATTGAAGAATGAGCTGGTTAATGCTGTGAACGAAAATCAGGTGCTTGTTGTTGTTGGTGAGACTGGTTCAGGTAAAACAACCCAGGTAGCTCAGTATCTTGCTGAAGCAGGTTACAGCACAAAGGGCATAATTGGATGTACTCAACCGCGTAGAGTTGCAGCCACTTCTGTGGCCAAGAGGGTTGCTGAAGAAGTTGGTTGTAGATTAGGGGAGGAAGTTGGGTATTCTATTCGATTTGATGATTGTACTGGACCGGATACTTTGATTAAGTACATGACTGAAGGAATGCTTTTTCGGGAGATTTTGATGGACAAAAACCTCTCTCAGTACTCTGTGATCATGCTTGATGAAGCCCATGAAAGAACAGTCAATACTGATGTTCTTTTCGGAATGCTGAAGCAACTTGTTAAAAGACGACCTGATCTTCGTTTGATTGTTACGTCTGCAACACTGGATGCAGAGAAGTTTTCGAGGTATTTCTTCAATTGTATGATATTCACTGTTCCTGGTAGAACTTATCCTGTAGACACACTGTACGCAAAGCAGCCTGAAAGTGATTACTTGGATGGAGCTATATTGACTGTTCTGCAACTTCACTTGAGTGAACCTGAAGGTGACATACTTGTCTTCTTGACTGGTGAGGAGGAGATTGAATTTGCTTGTCAGTCTCTGTATGAAAGGATGAAAGAACTAGGTAAAGATGTTCCGGAATTGATTATCCTACCAGCTTATGGTGCCCAACCGAGTGCAGAGCAGTCAAAGATCTTTAAGCCTGCTCCTCCAGGGAAGCGAAAAGTGGTTGTGGCTACCAATATTGCTGAAACTTCTTTGACCATTGATGGGATATTTTACGTAATTGATCCAGGGTTTGCAAAGATAAATGTATATAATCCGAAGCAAGGGGTTGATTTGCTGGTTGTAACACCAATTTCACAGGCATCAGCCAGTCAACGAGCTGGGCGTGCTGGGCGTACAGGGCCAGGAAAATGTTACCGCCTTTACACTGAGAGTGCTTTTCACAATGAGATGTCTCCTAATACAGTTCCAGAAATCCAAAGATCAAATCTTGTACATACTACACTGATGTTGAAAGCTATGGGAATAAATGATCTTAAATCTTTTGATTTTATGGATCCCCCATCACCCGAAGCACTTGCGTCTGCCGTGGAACAACTGAAGATGCTAGGAGCCTTGGATGAAGAGGGGTTCCTGACCAAATTGGGTAGTAGAATGGCCGTGCTGCCTCTGGATCCACCCTTGTCTAAAATGCTGCTTGCCAGTGCGAACCTTGGATGCAGTGATGAAATTGTGACCATCATTGCCATGCTTCAGGCAGGCAATACCTTCTACAGGCCTAAGGAAAAACAAGCGCAAGCAGATTTGAAGAAGGCCAAGTTTCTACAGCCTGAGGGAGACCATCTGACTTTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCTAGCCCCTGGTGTTCAGAGAACTTTGTCCAATTTCGGTCATTGAGTAGGGCAAGGGATATCAGGAAACAGCTTCTTACTGTCATGGACAAGTATGAATTAGAGGTTGTAAGTGCAGGAAAAGATCGAACAATGATCAGAAAAGCGATTATAACCGGATGCTTCTTTCATGTTGCTAAAAAGGAACCACGTGAGGGTTATAGAACCATAGTCGACAAGCAGGTAGTTTATATCCACCCAAGCAGTGTTCTTTTCCAGAGACAGCCAGATTGGGTCATCTACAATGAGCTGGTGATGACCACAAAGGAGTACATGCGCGAGGTCAGCGCTATAGATCCCAAGTGGCTTATGGAACAGGTGCCAAGATTCTTTAAGGCTGCAGATCCTACAAAGATGAGCAACCGCAAATGCCGAGAACGCATCGAACCGCTTTATGACAGATATCATGAGCCCAACTCTTGGCGTCTGAGTAGACGGCGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

893

Amino Acids

100.89

Weight (kDa)

8.07

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2345
AasI GACNNNNNNGTC 1 cut(s) 1352
Acc36I ACCTGC 2 cut(s) 827, 2404
AccB1I GGYRCC 2 cut(s) 1463, 2551
AccB7I CCANNNNNTGG 2 cut(s) 1460, 2652
AccI GTMKAC 3 cut(s) 1254, 2406, 2665
AccII CGCG 2 cut(s) 877, 2511
AccIII TCCGGA 1 cut(s) 1435
AciI CCGC 4 cut(s) 875, 1723, 2596, 2621
AclWI GGATC 9 cut(s) 257, 534, 1583, 1856, 1869, 1973, 1986, 2522, 2570
AcoI YGGCCR 3 cut(s) 153, 900, 1962
AcsI RAATTY 3 cut(s) 180, 1382, 2188
AcuI CTGAAG 8 cut(s) 434, 852, 936, 1029, 1145, 1359, 1925, 2042
AcvI CACGTG 1 cut(s) 2384
AcyI GRCGYC 2 cut(s) 706, 2656
AfaI GTAC 8 cut(s) 868, 976, 1001, 1058, 1265, 1702, 1800, 2504
AfeI AGCGCT 1 cut(s) 2521
AfiI CCNNNNNNNGG 7 cut(s) 157, 1460, 1569, 1628, 2079, 2387, 2652
AgsI TTSAA 9 cut(s) 335, 464, 516, 701, 733, 1213, 1382, 1819, 2113
AjnI CCWGG 6 cut(s) 810, 1234, 1510, 1591, 1708, 2201
AjuI GAANNNNNNNTTGG 2 cut(s) 112, 144
AleI CACNNNNGTG 2 cut(s) 896, 1329
Alw26I GTCTC 5 cut(s) 782, 1401, 1764, 2136, 2446
AlwI GGATC 9 cut(s) 257, 534, 1583, 1856, 1869, 1973, 1986, 2522, 2570
AlwNI CAGNNNCTG 1 cut(s) 1399
Aor13HI TCCGGA 1 cut(s) 1435
Aor51HI AGCGCT 1 cut(s) 2521
AoxI GGCC 7 cut(s) 18, 153, 900, 1706, 1962, 2081, 2118
ApeKI GCWGC 9 cut(s) 272, 440, 443, 599, 887, 1273, 1969, 1999, 2570
ApoI RAATTY 3 cut(s) 180, 1382, 2188
ArsI GACNNNNNNTTYG 2 cut(s) 1137, 1169
AspLEI GCGC 5 cut(s) 141, 460, 2101, 2511, 2522
AspS9I GGNCC 3 cut(s) 352, 980, 1706
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 8 cut(s) 157, 387, 578, 797, 1355, 1379, 1863, 2497
AvaII GGWCC 2 cut(s) 352, 980
AxyI CCTNAGG 2 cut(s) 2085, 2136
BaeGI GKGCMC 1 cut(s) 1468
BalI TGGCCA 1 cut(s) 902
BamHI GGATCC 2 cut(s) 1861, 1978
BanI GGYRCC 2 cut(s) 1463, 2551
BanII GRGCYC 2 cut(s) 664, 2646
BarI GAAGNNNNNNTAC 2 cut(s) 1332, 1364
BbrPI CACGTG 1 cut(s) 2384
BbsI GAAGAC 2 cut(s) 552, 1348
BbvI GCAGC 9 cut(s) 259, 430, 452, 586, 899, 1285, 1956, 1986, 2557
BccI CCATC 6 cut(s) 1030, 1289, 1562, 1876, 2051, 2154
BceAI ACGGC 5 cut(s) 5, 420, 719, 1877, 1949
BcgI CGANNNNNNTGC 4 cut(s) 17, 51, 1865, 1899
BciT130I CCWGG 6 cut(s) 812, 1236, 1512, 1593, 1710, 2203
BciVI GTATCC 1 cut(s) 979
BclI TGATCA 2 cut(s) 1065, 2328
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 5 cut(s) 782, 1401, 1764, 2136, 2446
BfaI CTAG 3 cut(s) 1421, 1913, 2196
BfmI CTRYAG 5 cut(s) 1251, 2077, 2129, 2523, 2571
BfoI RGCGCY 1 cut(s) 2523
BfuAI ACCTGC 2 cut(s) 827, 2404
BfuI GTATCC 1 cut(s) 979
BglII AGATCT 1 cut(s) 1491
BisI GCNGC 9 cut(s) 273, 441, 444, 600, 888, 1274, 1970, 2000, 2571
BlsI GCNGC 9 cut(s) 274, 442, 445, 601, 889, 1275, 1971, 2001, 2572
BmcAI AGTACT 1 cut(s) 1058
Bme1390I CCNGG 7 cut(s) 152, 812, 1236, 1512, 1593, 1710, 2203
Bme18I GGWCC 2 cut(s) 352, 980
BmgT120I GGNCC 3 cut(s) 352, 980, 1706
BmiI GGNNCC 9 cut(s) 354, 661, 1465, 1863, 1918, 1937, 1980, 2379, 2553
BmrFI CCNGG 7 cut(s) 152, 812, 1236, 1512, 1593, 1710, 2203
BmsI GCATC 8 cut(s) 160, 586, 1174, 1676, 1899, 2012, 2342, 2622
BpiI GAAGAC 2 cut(s) 552, 1348
BplI GAGNNNNNCTC 2 cut(s) 2633, 2665
BpmI CTGGAG 1 cut(s) 1494
BpuEI CTTGAG 1 cut(s) 1348
BpuMI CCSGG 1 cut(s) 152
BsaAI YACGTR 2 cut(s) 1582, 2384
BsaBI GATNNNNATC 2 cut(s) 531, 573
BsaHI GRCGYC 2 cut(s) 706, 2656
BsaI GGTCTC 1 cut(s) 2136
BsaJI CCNNGG 9 cut(s) 21, 156, 810, 1511, 1592, 1893, 1920, 2017, 2201
BsaWI WCCGGW 3 cut(s) 982, 1435, 2348
Bsc4I CCNNNNNNNGG 7 cut(s) 157, 1460, 1569, 1628, 2079, 2387, 2652
Bse1I ACTGG 6 cut(s) 796, 982, 1185, 1369, 1674, 2007
Bse21I CCTNAGG 2 cut(s) 2085, 2136
Bse3DI GCAATG 1 cut(s) 2046
Bse8I GATNNNNATC 2 cut(s) 531, 573
BseAI TCCGGA 1 cut(s) 1435
BseBI CCWGG 6 cut(s) 812, 1236, 1512, 1593, 1710, 2203
BseDI CCNNGG 9 cut(s) 21, 156, 810, 1511, 1592, 1893, 1920, 2017, 2201
BseGI GGATG 9 cut(s) 352, 601, 869, 1189, 1300, 1416, 1930, 2027, 2357
BseJI GATNNNNATC 2 cut(s) 531, 573
BseLI CCNNNNNNNGG 7 cut(s) 157, 1460, 1569, 1628, 2079, 2387, 2652
BseMI GCAATG 1 cut(s) 2046
BseMII CTCAG 7 cut(s) 146, 656, 833, 1067, 1725, 2127, 2651
BseNI ACTGG 6 cut(s) 796, 982, 1185, 1369, 1674, 2007
BseRI GAGGAG 3 cut(s) 1385, 1388, 1497
BseSI GKGCMC 1 cut(s) 1468
BseXI GCAGC 9 cut(s) 259, 430, 452, 586, 899, 1285, 1956, 1986, 2557
BseYI CCCAGC 2 cut(s) 1685, 1694
BsgI GTGCAG 4 cut(s) 429, 459, 1497, 2328
Bsh1236I CGCG 2 cut(s) 877, 2511
BshFI GGCC 7 cut(s) 20, 155, 902, 1708, 1964, 2083, 2120
BshNI GGYRCC 2 cut(s) 1463, 2551
BsiSI CCGG 4 cut(s) 152, 983, 1436, 2349
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 7 cut(s) 157, 1460, 1569, 1628, 2079, 2387, 2652
BsmAI GTCTC 5 cut(s) 782, 1401, 1764, 2136, 2446
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 2 cut(s) 1020, 1125
BsnI GGCC 7 cut(s) 20, 155, 902, 1708, 1964, 2083, 2120
Bso31I GGTCTC 1 cut(s) 2136
Bsp1286I GDGCHC 3 cut(s) 664, 1468, 2646
Bsp13I TCCGGA 1 cut(s) 1435
Bsp1407I TGTACA 1 cut(s) 1798
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 4 cut(s) 875, 1723, 2596, 2621
BspANI GGCC 7 cut(s) 20, 155, 902, 1708, 1964, 2083, 2120
BspCNI CTCAG 7 cut(s) 145, 657, 832, 1066, 1726, 2128, 2652
BspEI TCCGGA 1 cut(s) 1435
BspFNI CGCG 2 cut(s) 877, 2511
BspHI TCATGA 1 cut(s) 2638
BspLI GGNNCC 9 cut(s) 354, 661, 1465, 1863, 1918, 1937, 1980, 2379, 2553
BspMAI CTGCAG 1 cut(s) 2575
BspMI ACCTGC 2 cut(s) 827, 2404
BspPI GGATC 9 cut(s) 257, 534, 1583, 1856, 1869, 1973, 1986, 2522, 2570
BspT107I GGYRCC 2 cut(s) 1463, 2551
BspTNI GGTCTC 1 cut(s) 2136
BsrDI GCAATG 1 cut(s) 2046
BsrGI TGTACA 1 cut(s) 1798
BsrI ACTGG 6 cut(s) 796, 982, 1185, 1369, 1674, 2007
BssECI CCNNGG 9 cut(s) 21, 156, 810, 1511, 1592, 1893, 1920, 2017, 2201
BssNI GRCGYC 2 cut(s) 706, 2656
BssT1I CCWWGG 3 cut(s) 156, 1920, 2017
Bst2UI CCWGG 6 cut(s) 812, 1236, 1512, 1593, 1710, 2203
Bst4CI ACNGT 6 cut(s) 1096, 1231, 1263, 1312, 1771, 2275
Bst6I CTCTTC 4 cut(s) 306, 321, 638, 1923
BstACI GRCGYC 2 cut(s) 706, 2656
BstAUI TGTACA 1 cut(s) 1798
BstBAI YACGTR 2 cut(s) 1582, 2384
BstC8I GCNNGC 7 cut(s) 604, 1503, 1692, 2004, 2065, 2103, 2673
BstDSI CCRYGG 3 cut(s) 21, 156, 1893
BstEII GGTNACC 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 2077
BstF5I GGATG 9 cut(s) 352, 601, 869, 1189, 1300, 1416, 1930, 2027, 2357
BstFNI CGCG 2 cut(s) 877, 2511
BstH2I RGCGCY 1 cut(s) 2523
BstHHI GCGC 5 cut(s) 141, 460, 2101, 2511, 2522
BstMAI GTCTC 5 cut(s) 782, 1401, 1764, 2136, 2446
BstMWI GCNNNNNNNGC 9 cut(s) 147, 852, 1463, 1691, 1696, 1705, 2180, 2517, 2610
BstNI CCWGG 6 cut(s) 812, 1236, 1512, 1593, 1710, 2203
BstNSI RCATGY 2 cut(s) 67, 2509
BstPI GGTNACC 1 cut(s) 393
BstSCI CCNGG 7 cut(s) 150, 810, 1234, 1510, 1591, 1708, 2201
BstSFI CTRYAG 5 cut(s) 1251, 2077, 2129, 2523, 2571
BstSLI GKGCMC 1 cut(s) 1468
BstSNI TACGTA 1 cut(s) 1582
BstUI CGCG 2 cut(s) 877, 2511
BstV1I GCAGC 9 cut(s) 259, 430, 452, 586, 899, 1285, 1956, 1986, 2557
BstV2I GAAGAC 2 cut(s) 552, 1348
BstX2I RGATCY 6 cut(s) 526, 1491, 1861, 1978, 2527, 2575
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 6 cut(s) 526, 1491, 1861, 1978, 2527, 2575
Bsu36I CCTNAGG 2 cut(s) 2085, 2136
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 7 cut(s) 20, 155, 902, 1708, 1964, 2083, 2120
BtgI CCRYGG 3 cut(s) 21, 156, 1893
BtsCI GGATG 9 cut(s) 352, 601, 869, 1189, 1300, 1416, 1930, 2027, 2357
BtsI GCAGTG 2 cut(s) 2032, 2443
BtsIMutI CAGTG 8 cut(s) 1178, 1227, 1259, 1731, 1808, 2014, 2032, 2443
BveI ACCTGC 2 cut(s) 827, 2404
Cac8I GCNNGC 7 cut(s) 604, 1503, 1692, 2004, 2065, 2103, 2673
CaiI CAGNNNCTG 1 cut(s) 1399
CciI TCATGA 1 cut(s) 2638
CfoI GCGC 5 cut(s) 141, 460, 2101, 2511, 2522
Cfr13I GGNCC 3 cut(s) 352, 980, 1706
CseI GACGC 3 cut(s) 695, 1875, 2645
Csp6I GTAC 8 cut(s) 867, 975, 1000, 1057, 1264, 1701, 1799, 2503
CviQI GTAC 8 cut(s) 867, 975, 1000, 1057, 1264, 1701, 1799, 2503
DrdI GACNNNNNNGTC 1 cut(s) 1352
DseDI GACNNNNNNGTC 1 cut(s) 1352
EaeI YGGCCR 3 cut(s) 153, 900, 1962
Eam1104I CTCTTC 4 cut(s) 306, 321, 638, 1923
EarI CTCTTC 4 cut(s) 306, 321, 638, 1923
Eco105I TACGTA 1 cut(s) 1582
Eco130I CCWWGG 3 cut(s) 156, 1920, 2017
Eco147I AGGCCT 1 cut(s) 2083
Eco24I GRGCYC 2 cut(s) 664, 2646
Eco31I GGTCTC 1 cut(s) 2136
Eco32I GATATC 3 cut(s) 575, 2254, 2636
Eco47I GGWCC 2 cut(s) 352, 980
Eco47III AGCGCT 1 cut(s) 2521
Eco57I CTGAAG 8 cut(s) 434, 852, 936, 1029, 1145, 1359, 1925, 2042
Eco72I CACGTG 1 cut(s) 2384
Eco81I CCTNAGG 2 cut(s) 2085, 2136
Eco91I GGTNACC 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 2077
EcoO109I RGGNCCY 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 393
EcoRII CCWGG 6 cut(s) 810, 1234, 1510, 1591, 1708, 2201
EcoRV GATATC 3 cut(s) 575, 2254, 2636
EcoT14I CCWWGG 3 cut(s) 156, 1920, 2017
EcoT38I GRGCYC 2 cut(s) 664, 2646
ErhI CCWWGG 3 cut(s) 156, 1920, 2017
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 1 cut(s) 158
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 2 cut(s) 1065, 2328
FblI GTMKAC 3 cut(s) 1254, 2406, 2665
Fnu4HI GCNGC 9 cut(s) 273, 441, 444, 600, 888, 1274, 1970, 2000, 2571
FokI GGATG 9 cut(s) 359, 608, 876, 1196, 1307, 1423, 1937, 2034, 2364
FriOI GRGCYC 2 cut(s) 664, 2646
Fsp4HI GCNGC 9 cut(s) 273, 441, 444, 600, 888, 1274, 1970, 2000, 2571
FspBI CTAG 3 cut(s) 1421, 1913, 2196
GlaI GCGC 5 cut(s) 140, 459, 2100, 2510, 2521
GluI GCNGC 9 cut(s) 273, 441, 444, 600, 888, 1274, 1970, 2000, 2571
GsaI CCCAGC 2 cut(s) 1689, 1698
GsuI CTGGAG 1 cut(s) 1494
HaeII RGCGCY 1 cut(s) 2523
HaeIII GGCC 7 cut(s) 20, 155, 902, 1708, 1964, 2083, 2120
HapII CCGG 4 cut(s) 152, 983, 1436, 2349
HgaI GACGC 3 cut(s) 695, 1875, 2645
HhaI GCGC 5 cut(s) 141, 460, 2101, 2511, 2522
Hin1I GRCGYC 2 cut(s) 706, 2656
Hin6I GCGC 5 cut(s) 139, 458, 2099, 2509, 2520
HinP1I GCGC 5 cut(s) 139, 458, 2099, 2509, 2520
HincII GTYRAC 3 cut(s) 232, 1679, 2407
HindII GTYRAC 3 cut(s) 232, 1679, 2407
HinfI GANTC 2 cut(s) 375, 2559
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 4 cut(s) 152, 983, 1436, 2349
HphI GGTGA 8 cut(s) 157, 387, 578, 797, 1355, 1379, 1863, 2497
Hpy166II GTNNAC 8 cut(s) 25, 232, 757, 1255, 1334, 1679, 2407, 2666
Hpy188I TCNGA 8 cut(s) 135, 711, 1118, 1623, 2151, 2212, 2333, 2661
Hpy8I GTNNAC 8 cut(s) 25, 232, 757, 1255, 1334, 1679, 2407, 2666
HpyAV CCTTC 6 cut(s) 239, 650, 1004, 1334, 2083, 2110
HpyCH4III ACNGT 6 cut(s) 1096, 1231, 1263, 1312, 1771, 2275
HpyCH4IV ACGT 3 cut(s) 1169, 1581, 2383
HpyF10VI GCNNNNNNNGC 9 cut(s) 147, 852, 1463, 1691, 1696, 1705, 2180, 2517, 2610
HpySE526I ACGT 3 cut(s) 1169, 1581, 2383
Hsp92I GRCGYC 2 cut(s) 706, 2656
HspAI GCGC 5 cut(s) 139, 458, 2099, 2509, 2520
Kpn2I TCCGGA 1 cut(s) 1435
Ksp22I TGATCA 2 cut(s) 1065, 2328
KspAI GTTAAC 1 cut(s) 232
LmnI GCTCC 7 cut(s) 56, 213, 340, 659, 1298, 1510, 1916
Lsp1109I GCAGC 9 cut(s) 259, 430, 452, 586, 899, 1285, 1956, 1986, 2557
LweI GCATC 8 cut(s) 160, 586, 1174, 1676, 1899, 2012, 2342, 2622
MaeI CTAG 3 cut(s) 1421, 1913, 2196
MaeII ACGT 3 cut(s) 1169, 1581, 2383
MaeIII GTNAC 7 cut(s) 393, 839, 1165, 1343, 1648, 1718, 2038
MfeI CAATTG 3 cut(s) 384, 420, 1213
MflI RGATCY 6 cut(s) 526, 1491, 1861, 1978, 2527, 2575
MhlI GDGCHC 3 cut(s) 664, 1468, 2646
MlsI TGGCCA 1 cut(s) 902
MluNI TGGCCA 1 cut(s) 902
MlyI GAGTC 1 cut(s) 384
MmeI TCCRAC 2 cut(s) 72, 274
Mox20I TGGCCA 1 cut(s) 902
MroI TCCGGA 1 cut(s) 1435
MscI TGGCCA 1 cut(s) 902
MslI CAYNNNNRTG 3 cut(s) 896, 1329, 2051
Msp20I TGGCCA 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 4 cut(s) 152, 983, 1436, 2349
MspR9I CCNGG 7 cut(s) 152, 812, 1236, 1512, 1593, 1710, 2203
MunI CAATTG 3 cut(s) 384, 420, 1213
Mva1269I GAATGC 2 cut(s) 1020, 1125
MvaI CCWGG 6 cut(s) 812, 1236, 1512, 1593, 1710, 2203
MvnI CGCG 2 cut(s) 877, 2511
MwoI GCNNNNNNNGC 9 cut(s) 147, 852, 1463, 1691, 1696, 1705, 2180, 2517, 2610
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 280
NlaIV GGNNCC 9 cut(s) 354, 661, 1465, 1863, 1918, 1937, 1980, 2379, 2553
NmeAIII GCCGAG 1 cut(s) 2630
NmuCI GTSAC 3 cut(s) 393, 1343, 2038
NspI RCATGY 2 cut(s) 67, 2509
OliI CACNNNNGTG 2 cut(s) 896, 1329
PagI TCATGA 1 cut(s) 2638
PceI AGGCCT 1 cut(s) 2083
PcsI WCGNNNNNNNCGW 1 cut(s) 1687
PctI GAATGC 2 cut(s) 1020, 1125
PfeI GAWTC 1 cut(s) 2559
PflMI CCANNNNNTGG 2 cut(s) 1460, 2652
PkrI GCNGC 9 cut(s) 274, 442, 445, 601, 889, 1275, 1971, 2001, 2572
PleI GAGTC 1 cut(s) 383
PmaCI CACGTG 1 cut(s) 2384
PmlI CACGTG 1 cut(s) 2384
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 2 cut(s) 1582, 2384
PpuMI RGGWCCY 1 cut(s) 352
PsiI TTATAA 1 cut(s) 2345
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 6 cut(s) 810, 1234, 1510, 1591, 1708, 2201
PspCI CACGTG 1 cut(s) 2384
PspEI GGTNACC 1 cut(s) 393
PspFI CCCAGC 2 cut(s) 1685, 1694
PspGI CCWGG 6 cut(s) 810, 1234, 1510, 1591, 1708, 2201
PspN4I GGNNCC 9 cut(s) 354, 661, 1465, 1863, 1918, 1937, 1980, 2379, 2553
PspPI GGNCC 3 cut(s) 352, 980, 1706
PspPPI RGGWCCY 1 cut(s) 352
PsrI GAACNNNNNNTAC 2 cut(s) 1084, 1116
PstI CTGCAG 1 cut(s) 2575
PstNI CAGNNNCTG 1 cut(s) 1399
PsuI RGATCY 6 cut(s) 526, 1491, 1861, 1978, 2527, 2575
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 8 cut(s) 868, 976, 1001, 1058, 1265, 1702, 1800, 2504
RsaNI GTAC 8 cut(s) 867, 975, 1000, 1057, 1264, 1701, 1799, 2503
RseI CAYNNNNRTG 3 cut(s) 896, 1329, 2051
SalI GTCGAC 1 cut(s) 2405
SatI GCNGC 9 cut(s) 273, 441, 444, 600, 888, 1274, 1970, 2000, 2571
Sau96I GGNCC 3 cut(s) 352, 980, 1706
ScaI AGTACT 1 cut(s) 1058
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 7 cut(s) 152, 812, 1236, 1512, 1593, 1710, 2203
SduI GDGCHC 3 cut(s) 664, 1468, 2646
SfaNI GCATC 8 cut(s) 160, 586, 1174, 1676, 1899, 2012, 2342, 2622
SfcI CTRYAG 5 cut(s) 1251, 2077, 2129, 2523, 2571
SinI GGWCC 2 cut(s) 352, 980
SmiMI CAYNNNNRTG 3 cut(s) 896, 1329, 2051
SmlI CTYRAG 1 cut(s) 1327
SmoI CTYRAG 1 cut(s) 1327
SnaBI TACGTA 1 cut(s) 1582
SseBI AGGCCT 1 cut(s) 2083
SsiI CCGC 4 cut(s) 875, 1723, 2596, 2621
SspI AATATT 1 cut(s) 1543
SspMI CTAG 3 cut(s) 1421, 1913, 2196
StuI AGGCCT 1 cut(s) 2083
StyD4I CCNGG 7 cut(s) 150, 810, 1234, 1510, 1591, 1708, 2201
StyI CCWWGG 3 cut(s) 156, 1920, 2017
TaaI ACNGT 6 cut(s) 1096, 1231, 1263, 1312, 1771, 2275
TaiI ACGT 3 cut(s) 1172, 1584, 2386
TaqI TCGA 8 cut(s) 7, 307, 618, 961, 1199, 2320, 2406, 2616
TaqII GACCGA 1 cut(s) 2220
TatI WGTACW 6 cut(s) 866, 974, 999, 1056, 1798, 2502
TfiI GAWTC 1 cut(s) 2559
TscAI CASTG 8 cut(s) 1185, 1234, 1266, 1738, 1815, 2014, 2032, 2443
TseFI GTSAC 3 cut(s) 393, 1343, 2038
TseI GCWGC 9 cut(s) 272, 440, 443, 599, 887, 1273, 1969, 1999, 2570
Tsp45I GTSAC 3 cut(s) 393, 1343, 2038
TspGWI ACGGA 2 cut(s) 23, 69
TspRI CASTG 8 cut(s) 1185, 1234, 1266, 1738, 1815, 2014, 2032, 2443
Van91I CCANNNNNTGG 2 cut(s) 1460, 2652
VpaK11BI GGWCC 2 cut(s) 352, 980
XagI CCTNNNNNAGG 1 cut(s) 2077
XapI RAATTY 3 cut(s) 180, 1382, 2188
XceI RCATGY 2 cut(s) 67, 2509
XcmI CCANNNNNNNNNTGG 1 cut(s) 2539
XmiI GTMKAC 3 cut(s) 1254, 2406, 2665
XspI CTAG 3 cut(s) 1421, 1913, 2196
ZrmI AGTACT 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.