Rmu_sc0001909.1_g000017

Pre-mRNA-splicing factor ATP-dependent RNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001909.1
OG0000671
Physical Location & Seq
Reverse (-)
69765 .. 70115
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001909.1_g000017.1.cds

Sequence Viewer

Length: 351 bp
atggacaagcatgaattagaggttgtaagtgcaggaaaagatcgcacaatgatcagaaaggcgattgtagctggattcttcttccaagtagctaaaagggatccacacgagggttatagaacctttattgataatcagctagtttttatccacccgagcagtgttcttttccggagacaaccagattgggtcatctacaatgagctggtgatgaccacaaaggagtacatgcgcgagatcagtgttatagaatctatatggctcatggaactggtgccgggattttttaaggtaacagttcctccaaggatgagcaagcggaaacgtcaagaaattgaaccacttaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind S1

Protein Analysis

116

Amino Acids

13.78

Weight (kDa)

9.34

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26560
fragaria_vesca FvH4_3g44820 FvH4_4g07500 FvH4_4g07500 FvH4_4g07500 FvH4_4g07850 FvH4_4g07850 FvH4_7g12750
malus_domestica MD09G1231900.v1.1 MD15G1068900.v1.1 MD15G1069000.v1.1 MD16G1254900.v1.1 MD17G1229800.v1.1
prunus_persica Prupe.1G082300_v2.0.a1 Prupe.1G368500_v2.0.a1 Prupe.1G422500_v2.0.a1 Prupe.2G077500_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G077900_v2.0.a1 Prupe.2G078200_v2.0.a1
pyrus_communis pycom08g06730 pycom09g15120 pycom15g06530 pycom16g21640 pycom17g23220 pycom17g23230 pycom17g23240
rosa_chinensis RchiOBHm_Chr1g0351781 RchiOBHm_Chr4g0400041 RchiOBHm_Chr4g0401121 RchiOBHm_Chr5g0079971 RchiOBHm_Chr5g0081521 RchiOBHm_Chr7g0219091
rosa_laevigata RLG00000009162 RLG00000009217 RLG00000028384 RLG00000036944
rosa_multiflora Rmu_co8434143.1_g000001 Rmu_sc0001909.1_g000017 Rmu_sc0001909.1_g000025 Rmu_sc0001933.1_g000012 Rmu_sc0004005.1_g000001 Rmu_sc0007702.1_g000002 Rmu_sc0010608.1_g000004
rosa_roxburghii Rroxscaffold_1G00002030 Rroxscaffold_4G00303550 Rroxscaffold_5G00345000 Rroxscaffold_5G00345950 Rroxscaffold_5G00345970
rosa_rugosa Rorug01G0221400 Rorug01G0221500 Rorug04G0022300 Rorug04G0022400 Rorug04G0028000 Rorug05G0476900
rosa_samantha Rh1AG235400 Rh1BG205800 Rh1CG220000 Rh1DG232900 Rh2AG475800 Rh2BG083000 Rh2CG085000 Rh4AG097800 Rh4AG105600 Rh4AG109800 Rh4BG095800 Rh4CG107200 Rh4CG114200 Rh4DG092600 Rh4DG097800 Rh5BG553100 Rh5DG563200
rosa_wichuraiana Rw1G020490 Rw4G008160 Rw4G008530 Rw5G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AccII CGCG 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 1 cut(s) 319
AclWI GGATC 2 cut(s) 95, 108
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 338
AluBI AGCT 4 cut(s) 71, 92, 139, 205
AluI AGCT 4 cut(s) 71, 92, 139, 205
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 95, 108
Ama87I CYCGRG 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 171
AspLEI GCGC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 154
BamHI GGATCC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 274
BauI CACGAG 1 cut(s) 107
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 102, 276
BmrFI CCNGG 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 2 cut(s) 172, 278
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 4 cut(s) 40, 51, 100, 237
BspACI CCGC 1 cut(s) 319
BspEI TCCGGA 1 cut(s) 171
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 102, 276
BspPI GGATC 2 cut(s) 95, 108
BspT107I GGYRCC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 4 cut(s) 40, 51, 100, 237
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 317
BstF5I GGATG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 4 cut(s) 43, 54, 103, 240
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 4 cut(s) 40, 51, 100, 237
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtsCI GGATG 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 166, 247
Cac8I GCNNGC 1 cut(s) 317
CfoI GCGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 226
CviAII CATG 3 cut(s) 11, 229, 265
CviJI RGCY 5 cut(s) 71, 92, 139, 205, 262
CviKI_1 RGCY 5 cut(s) 71, 92, 139, 205, 262
CviQI GTAC 1 cut(s) 226
DpnI GATC 4 cut(s) 42, 53, 102, 239
DpnII GATC 4 cut(s) 40, 51, 100, 237
Eco130I CCWWGG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 3 cut(s) 14, 232, 268
FaiI YATR 7 cut(s) 12, 117, 230, 248, 257, 259, 266
FatI CATG 3 cut(s) 10, 228, 264
FbaI TGATCA 1 cut(s) 51
FokI GGATG 1 cut(s) 322
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 233
HapII CCGG 2 cut(s) 172, 278
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 14, 232, 268
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 2 cut(s) 75, 251
HpaII CCGG 2 cut(s) 172, 278
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 2 cut(s) 172, 329
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 3 cut(s) 14, 232, 268
HspAI GCGC 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 4 cut(s) 40, 51, 100, 237
LpnPI CCDG 7 cut(s) 18, 57, 185, 191, 195, 257, 291
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 42, 53, 102, 239
MboI GATC 4 cut(s) 40, 51, 100, 237
MboII GAAGA 2 cut(s) 70, 73
MflI RGATCY 1 cut(s) 100
MluCI AATT 3 cut(s) 14, 333, 346
MnlI CCTC 3 cut(s) 13, 103, 312
MroI TCCGGA 1 cut(s) 171
MseI TTAA 2 cut(s) 288, 345
MspI CCGG 2 cut(s) 172, 278
MspR9I CCNGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 279
NdeII GATC 4 cut(s) 40, 51, 100, 237
NlaIII CATG 3 cut(s) 14, 232, 268
NlaIV GGNNCC 2 cut(s) 102, 276
NspI RCATGY 1 cut(s) 232
PfeI GAWTC 2 cut(s) 75, 251
PspN4I GGNNCC 2 cut(s) 102, 276
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 288, 345
Sau3AI GATC 4 cut(s) 40, 51, 100, 237
ScrFI CCNGG 1 cut(s) 279
SetI ASST 8 cut(s) 24, 73, 94, 125, 141, 207, 294, 328
Sse9I AATT 3 cut(s) 14, 333, 346
SsiI CCGC 1 cut(s) 319
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 328
TasI AATT 3 cut(s) 14, 333, 346
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 2 cut(s) 75, 251
Tru1I TTAA 2 cut(s) 288, 345
Tru9I TTAA 2 cut(s) 288, 345
TscAI CASTG 2 cut(s) 166, 247
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 2 cut(s) 166, 247
XceI RCATGY 1 cut(s) 232
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.