AT4G38030

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000523
Physical Location & Seq
Reverse (-)
17863073 .. 17866730
3658 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38030.1

Sequence Viewer

Length: 2004 bp
ATGGTATCGCAGAAGAAGATCGCTTCGTTATTTATTTGTTTCCTTCTGTTGCTTCTTCTTCCACTCTCCTTTTCCAAGCCGACAAGGAACTTAGATGGAATAAGTGCAAGAGCTCCAACAGTGCAGCAGATAAGAAGCAGACATCATGGGACTAGAGAGGTGATAGTGGACAATGGGATAATCAGAGTCAGTTTCTCGAATCCTCAAGGACTTATAACTGGGATCAAATACAAAGGAATTGATAATGTTCTTCATCCACATCTCCGAGATAGAGGGTACTGGGACATAACATGGCAAGGAACAAACATTCGCCAAGGCGGCTTAGATCGAATCGAAGGAACAAATTTTAGAATCATCACTCAAACCCAAGAACAAGTGGAGATATCGTTCTCTAGAACATGGGAGGATGGTCATATTCCATTAAACGTAGACAAGAGGTATATCATACGTAGAAATACTTCAGGAATCTACATGTACGGAATCTTCGAGAGACTTCCCGAATGGCCAGAACTCGACATGGGTTTAATTCGAATCGCTTTCAAACTCAACCCTGAGAGATTTCATTACATGGCGGTGGCGGATAATCGACAAAGAGAAATGCCAACGGAAGATGACCGTGACATCAAACGTGGTCATGCCAAGGCTCTTGGTTATAAAGAGGCTGTACAATTGACTCATCCTCATAACTCCATGTTCAAAAACCAGGTGGATGATAAGTACCAGTACACATGTGAGATCAAAGACAACAAAGTGCACGGTTGGATCTCAACCAAGTCCCGTGTCGGCTTTTGGATCATCTCACCAAGCGGTGAATATCGCTCCGGTGGACCGATCAAACAAGAGCTCACGTCTCACGTCGGACCCACGGCCATCACGACTTTTATAAGCGGACATTATGTTGGTGCGGACATGGAGGCACATTACAGACCTGGTGAAGCGTGGAAAAAGGTCTTGGGACCTGTTTTTATTTACTTAAACTCTGATTCTACCAGCAACAATAAGCCTCAAGATTTGTTATGGGAAGATGCTAAACAACAGTCCGAAAAAGAAGTCAAAGCCTGGCCGTACGATTTTGTAGCATCCTCTGACTATCTTTCTCGTCGAGAAAGAGGAAGCGTCACTGGTCGTCTACTAGTCAACGACAGATTCTTGACGCCGGGAAAATCTGCATATGTCGGTTTAGCACCGCCGGGAGAAGCTGGTTCGTGGCAGACAAATACTAAGGGATATCAGTTTTGGACCAAGACGAACGAAACCGGTTACTTCACGATAGAAAACGTTAGACCGGGAACTTACAATCTGTATGGATGGGTTCCTGGTTTTATCGGGGACTTTCGATACCAAAACCTTGTTAACGTAGCTGCAGGTTCAGTGATTAGTCTCGGTAGAGTCGTGTACAAGCCACCTAGGAACGGTCCAACGTTATGGGAGATTGGTGTACCGGATCGAACCGCTCGAGAATACTTTATACCGGAGCCATACAAGGATACAATGAATCCGTTATACCTAAACCACACCGACAAGTTTAGACAGTACGGACTGTGGCAACGATACACAGAGTTATATCCAACTCATGATCTCGTCTACACAGTTGGAGTTAGTAACTATAGCCAAGACTGGTTCTACGCCCAAGTCACAAGGAAAACCGGTGATTTAACGTACGTACCAACAATATGGCAGATCGTGTTTCATCTTCCATACGTAAACTCGCGAGGCAGCTACACATTGCAGGTAGCTTTAGCCTCGGCTGCATGGGCTAATCTACAAGTTCGGATCAATAACCAAAACTCGTGGCCGTTTTTCTCAACGGGTACTATCGGAAAAGACAATGCTATAGCAAGACATGGAATCCATGGAATGTACCGGCTTTATACCATCGATGTGCCTGGAAGGTTGCTAAGAACCGGGACCAACACGATTTATCTTCGACAGCCTAAAGCACAAGGACCATTTGAAGGTCTTATGTATGATTACATTCGTCTAGAAGAGCCTTCTAGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

667

Amino Acids

76.62

Weight (kDa)

9.34

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 42 - 236 2.9e-82 Rhamnogalacturonate lyase family
fn3_3 PF14686 388 - 460 1.7e-26 Polysaccharide lyase family 4, domain II
CBM-like PF14683 474 - 661 3.3e-48 Polysaccharide lyase family 4, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65210 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT4G37950 AT4G37950 AT4G38030
fragaria_vesca FvH4_1g03290 FvH4_1g03300 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19200
malus_domestica MD01G1043200.v1.1 MD01G1043300.v1.1 MD02G1298500.v1.1 MD02G1307100.v1.1 MD04G1240500.v1.1 MD12G1256900.v1.1 MD12G1257400.v1.1 MD12G1257500.v1.1 MD15G1308100.v1.1 MD15G1308200.v1.1
prunus_persica Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1
pyrus_communis pycom01g07080 pycom15g27240
rosa_chinensis RchiOBHm_Chr2g0088421 RchiOBHm_Chr2g0088461 RchiOBHm_Chr2g0088481 RchiOBHm_Chr2g0110401 RchiOBHm_Chr2g0110411 RchiOBHm_Chr2g0110431
rosa_laevigata RLG00000003093 RLG00000015953 RLG00000015956 RLG00000015959 RLG00000017802 RLG00000017806
rosa_multiflora Rmu_sc0001393.1_g000003 Rmu_sc0001393.1_g000009 Rmu_sc0004733.1_g000013 Rmu_sc0004733.1_g000022
rosa_roxburghii Rroxscaffold_2G00133400 Rroxscaffold_2G00133420 Rroxscaffold_2G00152640 Rroxscaffold_2G00152680
rosa_rugosa Rorug01G0484000 Rorug01G0484200 Rorug01G0484600 Rorug02G0166800 Rorug02G0166900 Rorug02G0167000 Rorug02G0167500 Rorug02G0167600 Rorug02G0167800 Rorug02G0167800 Rorug07G0116100
rosa_samantha Rh2AG038500 Rh2AG038800 Rh2AG039000 Rh2AG219300 Rh2AG219400 Rh2BG038100 Rh2BG038400 Rh2BG228800 Rh2BG229000 Rh2CG039000 Rh2CG039600 Rh2CG221000 Rh2CG221200 Rh2DG038600 Rh2DG038800 Rh2DG225500 Rh2DG225600
rosa_wichuraiana Rw2G003060 Rw2G003080 Rw2G016930 Rw2G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 215, 654, 884
Acc36I ACCTGC 2 cut(s) 1355, 1720
AccBSI CCGCTC 1 cut(s) 1454
AccI GTMKAC 3 cut(s) 429, 1129, 1584
AccII CGCG 1 cut(s) 1711
AciI CCGC 8 cut(s) 318, 572, 578, 807, 888, 905, 1187, 1452
AclI AACGTT 2 cut(s) 1278, 1421
AclWI GGATC 5 cut(s) 230, 770, 800, 1452, 1781
AcoI YGGCCR 4 cut(s) 503, 867, 1061, 1793
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 1154
AfiI CCNNNNNNNGG 2 cut(s) 1412, 1955
AflIII ACRYGT 2 cut(s) 471, 728
AgeI ACCGGT 2 cut(s) 1256, 1646
AgsI TTSAA 3 cut(s) 541, 697, 1955
AhlI ACTAGT 1 cut(s) 1132
AjiI CACGTC 2 cut(s) 849, 856
AjnI CCWGG 5 cut(s) 702, 928, 1058, 1315, 1885
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
AluBI AGCT 7 cut(s) 113, 844, 1199, 1361, 1719, 1736, 2000
AluI AGCT 7 cut(s) 113, 844, 1199, 1361, 1719, 1736, 2000
Alw21I GWGCWC 3 cut(s) 115, 756, 846
Alw26I GTCTC 3 cut(s) 484, 855, 1385
Alw44I GTGCAC 1 cut(s) 752
AlwI GGATC 5 cut(s) 230, 770, 800, 1452, 1781
Ama87I CYCGRG 1 cut(s) 1455
AoxI GGCC 4 cut(s) 503, 867, 1061, 1793
ApaLI GTGCAC 1 cut(s) 752
ApeKI GCWGC 4 cut(s) 124, 1361, 1716, 1748
ApoI RAATTY 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 1035, 1067
AsiGI ACCGGT 2 cut(s) 1256, 1646
Asp700I GAANNNNTTC 1 cut(s) 457
AspA2I CCTAGG 1 cut(s) 1406
AspS9I GGNCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
AsuC2I CCSGG 4 cut(s) 1158, 1191, 1287, 1906
AsuHPI GGTGA 5 cut(s) 172, 792, 821, 944, 1661
AsuII TTCGAA 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 1455
AvaII GGWCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
AvrII CCTAGG 1 cut(s) 1406
BaeGI GKGCMC 1 cut(s) 756
BaeI ACNNNNGTAYC 2 cut(s) 1647, 1680
BalI TGGCCA 1 cut(s) 505
BanII GRGCYC 2 cut(s) 115, 846
BarI GAAGNNNNNNTAC 4 cut(s) 442, 467, 474, 499
BauI CACGAG 1 cut(s) 1789
Bbv12I GWGCWC 3 cut(s) 115, 756, 846
BbvI GCAGC 4 cut(s) 136, 1348, 1728, 1735
BccI CCATC 5 cut(s) 89, 401, 878, 1302, 1883
BceAI ACGGC 3 cut(s) 882, 1048, 1780
BciT130I CCWGG 5 cut(s) 704, 930, 1060, 1317, 1887
BciVI GTATCC 1 cut(s) 1480
BcnI CCSGG 4 cut(s) 1158, 1191, 1287, 1906
BcoDI GTCTC 3 cut(s) 484, 855, 1385
BcuI ACTAGT 1 cut(s) 1132
BfaI CTAG 6 cut(s) 153, 393, 1133, 1407, 1982, 1995
BfmI CTRYAG 3 cut(s) 1362, 1606, 1833
BfuAI ACCTGC 2 cut(s) 1355, 1720
BfuI GTATCC 1 cut(s) 1480
BglI GCCNNNNNGGC 1 cut(s) 318
BisI GCNGC 5 cut(s) 125, 319, 1362, 1717, 1749
BlnI CCTAGG 1 cut(s) 1406
BlsI GCNGC 5 cut(s) 126, 320, 1363, 1718, 1750
Bme1390I CCNGG 9 cut(s) 704, 930, 1060, 1158, 1191, 1287, 1317, 1887, 1906
Bme18I GGWCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
BmeT110I CYCGRG 1 cut(s) 1455
BmgBI CACGTC 2 cut(s) 849, 856
BmgT120I GGNCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
BmiI GGNNCC 5 cut(s) 862, 957, 1314, 1476, 1909
BmrFI CCNGG 9 cut(s) 704, 930, 1060, 1158, 1191, 1287, 1317, 1887, 1906
BmrI ACTGGG 2 cut(s) 228, 289
BmsI GCATC 2 cut(s) 1015, 1088
BmuI ACTGGG 2 cut(s) 228, 289
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 2 cut(s) 189, 990
BpuMI CCSGG 4 cut(s) 1158, 1191, 1287, 1906
Bsa29I ATCGAT 1 cut(s) 1878
BsaAI YACGTR 3 cut(s) 449, 1663, 1702
BsaHI GRCGYC 1 cut(s) 1154
BsaJI CCNNGG 6 cut(s) 313, 639, 864, 1406, 1743, 1852
BsaWI WCCGGW 5 cut(s) 821, 1256, 1441, 1471, 1646
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 1412, 1955
Bse118I RCCGGY 3 cut(s) 1256, 1646, 1863
Bse1I ACTGG 5 cut(s) 223, 284, 721, 1126, 1622
Bse3DI GCAATG 1 cut(s) 1724
BseBI CCWGG 5 cut(s) 704, 930, 1060, 1317, 1887
BseCI ATCGAT 1 cut(s) 1878
BseDI CCNNGG 6 cut(s) 313, 639, 864, 1406, 1743, 1852
BseGI GGATG 6 cut(s) 253, 412, 676, 715, 1079, 1313
BseLI CCNNNNNNNGG 2 cut(s) 1412, 1955
BseMI GCAATG 1 cut(s) 1724
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 5 cut(s) 223, 284, 721, 1126, 1622
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 4 cut(s) 136, 1348, 1728, 1735
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 1711
BshFI GGCC 4 cut(s) 505, 869, 1063, 1795
BshTI ACCGGT 2 cut(s) 1256, 1646
BshVI ATCGAT 1 cut(s) 1878
BsiHKAI GWGCWC 3 cut(s) 115, 756, 846
BsiHKCI CYCGRG 1 cut(s) 1455
BsiWI CGTACG 2 cut(s) 1065, 1659
BslFI GGGAC 6 cut(s) 163, 296, 760, 969, 1343, 1921
BslI CCNNNNNNNGG 2 cut(s) 1412, 1955
BsmAI GTCTC 3 cut(s) 484, 855, 1385
BsmBI CGTCTC 1 cut(s) 855
BsmFI GGGAC 6 cut(s) 163, 296, 760, 969, 1343, 1921
BsnI GGCC 4 cut(s) 505, 869, 1063, 1795
BsoBI CYCGRG 1 cut(s) 1455
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 115, 756, 846
Bsp1407I TGTACA 2 cut(s) 664, 1395
Bsp19I CCATGG 1 cut(s) 1852
Bsp68I TCGCGA 1 cut(s) 1711
BspACI CCGC 8 cut(s) 318, 572, 578, 807, 888, 905, 1187, 1452
BspANI GGCC 4 cut(s) 505, 869, 1063, 1795
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 1 cut(s) 1878
BspFNI CGCG 1 cut(s) 1711
BspHI TCATGA 1 cut(s) 1573
BspLI GGNNCC 5 cut(s) 862, 957, 1314, 1476, 1909
BspMAI CTGCAG 1 cut(s) 1366
BspMI ACCTGC 2 cut(s) 1355, 1720
BspPI GGATC 5 cut(s) 230, 770, 800, 1452, 1781
BspQI GCTCTTC 1 cut(s) 1980
BspT104I TTCGAA 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 1454
BsrDI GCAATG 1 cut(s) 1724
BsrFI RCCGGY 3 cut(s) 1256, 1646, 1863
BsrGI TGTACA 2 cut(s) 664, 1395
BsrI ACTGG 5 cut(s) 223, 284, 721, 1126, 1622
BssAI RCCGGY 3 cut(s) 1256, 1646, 1863
BssECI CCNNGG 6 cut(s) 313, 639, 864, 1406, 1743, 1852
BssNI GRCGYC 1 cut(s) 1154
BssSI CACGAG 1 cut(s) 1789
BssT1I CCWWGG 4 cut(s) 313, 639, 1406, 1852
Bst2BI CACGAG 1 cut(s) 1789
Bst2UI CCWGG 5 cut(s) 704, 930, 1060, 1317, 1887
Bst4CI ACNGT 8 cut(s) 121, 617, 758, 1038, 1415, 1533, 1542, 1591
Bst6I CTCTTC 1 cut(s) 1980
BstACI GRCGYC 1 cut(s) 1154
BstAUI TGTACA 2 cut(s) 664, 1395
BstBAI YACGTR 3 cut(s) 449, 1663, 1702
BstBI TTCGAA 1 cut(s) 529
BstDEI CTNAG 6 cut(s) 91, 322, 552, 1221, 1898, 2001
BstDSI CCRYGG 2 cut(s) 864, 1852
BstF5I GGATG 6 cut(s) 253, 412, 676, 715, 1079, 1313
BstFNI CGCG 1 cut(s) 1711
BstMAI GTCTC 3 cut(s) 484, 855, 1385
BstMWI GCNNNNNNNGC 3 cut(s) 318, 1748, 1754
BstNI CCWGG 5 cut(s) 704, 930, 1060, 1317, 1887
BstNSI RCATGY 2 cut(s) 475, 732
BstSCI CCNGG 9 cut(s) 702, 928, 1058, 1156, 1189, 1285, 1315, 1885, 1904
BstSFI CTRYAG 3 cut(s) 1362, 1606, 1833
BstSLI GKGCMC 1 cut(s) 756
BstSNI TACGTA 3 cut(s) 449, 1663, 1702
BstUI CGCG 1 cut(s) 1711
BstV1I GCAGC 4 cut(s) 136, 1348, 1728, 1735
BstX2I RGATCY 1 cut(s) 762
BstXI CCANNNNNNTGG 2 cut(s) 1425, 1674
BstYI RGATCY 1 cut(s) 762
Bsu15I ATCGAT 1 cut(s) 1878
BsuI GTATCC 1 cut(s) 1480
BsuRI GGCC 4 cut(s) 505, 869, 1063, 1795
BsuTUI ATCGAT 1 cut(s) 1878
BtgI CCRYGG 2 cut(s) 864, 1852
BtrI CACGTC 2 cut(s) 849, 856
BtsCI GGATG 6 cut(s) 253, 412, 676, 715, 1079, 1313
BtsIMutI CAGTG 3 cut(s) 126, 1119, 1377
BtuMI TCGCGA 1 cut(s) 1711
BveI ACCTGC 2 cut(s) 1355, 1720
CciI TCATGA 1 cut(s) 1573
Cfr10I RCCGGY 3 cut(s) 1256, 1646, 1863
Cfr13I GGNCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
ClaI ATCGAT 1 cut(s) 1878
CseI GACGC 2 cut(s) 1105, 1162
CsiI ACCWGGT 2 cut(s) 702, 928
CspAI ACCGGT 2 cut(s) 1256, 1646
CspCI CAANNNNNGTGG 2 cut(s) 1772, 1807
DdeI CTNAG 6 cut(s) 91, 322, 552, 1221, 1898, 2001
EaeI YGGCCR 4 cut(s) 503, 867, 1061, 1793
Eam1104I CTCTTC 1 cut(s) 1980
EarI CTCTTC 1 cut(s) 1980
EciI GGCGGA 1 cut(s) 593
Ecl136II GAGCTC 2 cut(s) 113, 844
Eco105I TACGTA 3 cut(s) 449, 1663, 1702
Eco130I CCWWGG 4 cut(s) 313, 639, 1406, 1852
Eco24I GRGCYC 2 cut(s) 115, 846
Eco32I GATATC 2 cut(s) 384, 1229
Eco47I GGWCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
Eco53kI GAGCTC 2 cut(s) 113, 844
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 1455
EcoICRI GAGCTC 2 cut(s) 113, 844
EcoO109I RGGNCCY 1 cut(s) 956
EcoRII CCWGG 5 cut(s) 702, 928, 1058, 1315, 1885
EcoRV GATATC 2 cut(s) 384, 1229
EcoT14I CCWWGG 4 cut(s) 313, 639, 1406, 1852
EcoT38I GRGCYC 2 cut(s) 115, 846
ErhI CCWWGG 4 cut(s) 313, 639, 1406, 1852
Esp3I CGTCTC 1 cut(s) 855
FaqI GGGAC 6 cut(s) 163, 296, 760, 969, 1343, 1921
FauNDI CATATG 1 cut(s) 1171
FblI GTMKAC 3 cut(s) 429, 1129, 1584
Fnu4HI GCNGC 5 cut(s) 125, 319, 1362, 1717, 1749
FokI GGATG 6 cut(s) 240, 419, 663, 722, 1066, 1320
FriOI GRGCYC 2 cut(s) 115, 846
Fsp4HI GCNGC 5 cut(s) 125, 319, 1362, 1717, 1749
FspBI CTAG 6 cut(s) 153, 393, 1133, 1407, 1982, 1995
GluI GCNGC 5 cut(s) 125, 319, 1362, 1717, 1749
HaeIII GGCC 4 cut(s) 505, 869, 1063, 1795
HgaI GACGC 2 cut(s) 1105, 1162
Hin1I GRCGYC 1 cut(s) 1154
HincII GTYRAC 2 cut(s) 1138, 1354
HindII GTYRAC 2 cut(s) 1138, 1354
HpaI GTTAAC 1 cut(s) 1354
HphI GGTGA 5 cut(s) 172, 792, 821, 944, 1661
Hpy188I TCNGA 8 cut(s) 185, 266, 860, 982, 1042, 1087, 1773, 1820
Hpy99I CGWCG 2 cut(s) 860, 1104
HpyAV CCTTC 5 cut(s) 53, 329, 1884, 1949, 2001
HpyCH4III ACNGT 8 cut(s) 121, 617, 758, 1038, 1415, 1533, 1542, 1591
HpyCH4V TGCA 7 cut(s) 107, 124, 754, 1169, 1364, 1729, 1751
HpyF10VI GCNNNNNNNGC 3 cut(s) 318, 1748, 1754
HpyF3I CTNAG 6 cut(s) 91, 322, 552, 1221, 1898, 2001
Hsp92I GRCGYC 1 cut(s) 1154
KspAI GTTAAC 1 cut(s) 1354
LguI GCTCTTC 1 cut(s) 1980
LmnI GCTCC 3 cut(s) 118, 824, 1474
Lsp1109I GCAGC 4 cut(s) 136, 1348, 1728, 1735
LweI GCATC 2 cut(s) 1015, 1088
MabI ACCWGGT 2 cut(s) 702, 928
MaeI CTAG 6 cut(s) 153, 393, 1133, 1407, 1982, 1995
MaeIII GTNAC 5 cut(s) 617, 1117, 1259, 1601, 1633
MbiI CCGCTC 1 cut(s) 1454
MfeI CAATTG 1 cut(s) 668
MflI RGATCY 1 cut(s) 762
MhlI GDGCHC 3 cut(s) 115, 756, 846
MlsI TGGCCA 1 cut(s) 505
MluCI AATT 4 cut(s) 237, 343, 525, 668
MluNI TGGCCA 1 cut(s) 505
MlyI GAGTC 3 cut(s) 195, 667, 1398
MmeI TCCRAC 6 cut(s) 140, 740, 838, 1442, 1573, 1592
Mox20I TGGCCA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 457
MscI TGGCCA 1 cut(s) 505
MseI TTAA 5 cut(s) 422, 524, 974, 1353, 1655
MslI CAYNNNNRTG 2 cut(s) 572, 1880
Msp20I TGGCCA 1 cut(s) 505
MspR9I CCNGG 9 cut(s) 704, 930, 1060, 1158, 1191, 1287, 1317, 1887, 1906
MunI CAATTG 1 cut(s) 668
MvaI CCWGG 5 cut(s) 704, 930, 1060, 1317, 1887
MvnI CGCG 1 cut(s) 1711
MwoI GCNNNNNNNGC 3 cut(s) 318, 1748, 1754
NciI CCSGG 4 cut(s) 1158, 1191, 1287, 1906
NcoI CCATGG 1 cut(s) 1852
NdeI CATATG 1 cut(s) 1171
NlaIV GGNNCC 5 cut(s) 862, 957, 1314, 1476, 1909
NmeAIII GCCGAG 1 cut(s) 1724
NmuCI GTSAC 3 cut(s) 617, 1117, 1633
NruI TCGCGA 1 cut(s) 1711
NspI RCATGY 2 cut(s) 475, 732
NspV TTCGAA 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 1455
PagI TCATGA 1 cut(s) 1573
PciI ACATGT 2 cut(s) 471, 728
PciSI GCTCTTC 1 cut(s) 1980
PcsI WCGNNNNNNNCGW 4 cut(s) 483, 872, 1389, 1453
PdmI GAANNNNTTC 1 cut(s) 457
Pfl23II CGTACG 2 cut(s) 1065, 1659
PinAI ACCGGT 2 cut(s) 1256, 1646
PkrI GCNGC 5 cut(s) 126, 320, 1363, 1718, 1750
PleI GAGTC 3 cut(s) 194, 667, 1397
PpsI GAGTC 3 cut(s) 194, 667, 1397
Ppu21I YACGTR 3 cut(s) 449, 1663, 1702
PpuMI RGGWCCY 1 cut(s) 956
PscI ACATGT 2 cut(s) 471, 728
PsiI TTATAA 3 cut(s) 215, 654, 884
Psp124BI GAGCTC 2 cut(s) 115, 846
Psp1406I AACGTT 2 cut(s) 1278, 1421
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 5 cut(s) 702, 928, 1058, 1315, 1885
PspGI CCWGG 5 cut(s) 702, 928, 1058, 1315, 1885
PspLI CGTACG 2 cut(s) 1065, 1659
PspN4I GGNNCC 5 cut(s) 862, 957, 1314, 1476, 1909
PspPI GGNCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
PspPPI RGGWCCY 1 cut(s) 956
PstI CTGCAG 1 cut(s) 1366
PsuI RGATCY 1 cut(s) 762
RruI TCGCGA 1 cut(s) 1711
RseI CAYNNNNRTG 2 cut(s) 572, 1880
SacI GAGCTC 2 cut(s) 115, 846
SapI GCTCTTC 1 cut(s) 1980
SaqAI TTAA 5 cut(s) 422, 524, 974, 1353, 1655
SatI GCNGC 5 cut(s) 125, 319, 1362, 1717, 1749
Sau96I GGNCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
SchI GAGTC 3 cut(s) 195, 667, 1398
ScrFI CCNGG 9 cut(s) 704, 930, 1060, 1158, 1191, 1287, 1317, 1887, 1906
SduI GDGCHC 3 cut(s) 115, 756, 846
SexAI ACCWGGT 2 cut(s) 702, 928
SfaNI GCATC 2 cut(s) 1015, 1088
SfcI CTRYAG 3 cut(s) 1362, 1606, 1833
Sfr274I CTCGAG 1 cut(s) 1455
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
SlaI CTCGAG 1 cut(s) 1455
SmiMI CAYNNNNRTG 2 cut(s) 572, 1880
SmlI CTYRAG 3 cut(s) 204, 1005, 1455
SmoI CTYRAG 3 cut(s) 204, 1005, 1455
SnaBI TACGTA 3 cut(s) 449, 1663, 1702
SpeI ACTAGT 1 cut(s) 1132
Sse9I AATT 4 cut(s) 237, 343, 525, 668
SsiI CCGC 8 cut(s) 318, 572, 578, 807, 888, 905, 1187, 1452
SspMI CTAG 6 cut(s) 153, 393, 1133, 1407, 1982, 1995
SstI GAGCTC 2 cut(s) 115, 846
StyD4I CCNGG 9 cut(s) 702, 928, 1058, 1156, 1189, 1285, 1315, 1885, 1904
StyI CCWWGG 4 cut(s) 313, 639, 1406, 1852
TaaI ACNGT 8 cut(s) 121, 617, 758, 1038, 1415, 1533, 1542, 1591
TaqII GACCGA 1 cut(s) 844
TasI AATT 4 cut(s) 237, 343, 525, 668
TatI WGTACW 3 cut(s) 664, 723, 1395
TauI GCSGC 1 cut(s) 321
Tru1I TTAA 5 cut(s) 422, 524, 974, 1353, 1655
Tru9I TTAA 5 cut(s) 422, 524, 974, 1353, 1655
TscAI CASTG 3 cut(s) 126, 1126, 1377
TseFI GTSAC 3 cut(s) 617, 1117, 1633
TseI GCWGC 4 cut(s) 124, 1361, 1716, 1748
Tsp45I GTSAC 3 cut(s) 617, 1117, 1633
TspDTI ATGAA 4 cut(s) 242, 551, 1508, 1679
TspGWI ACGGA 4 cut(s) 492, 620, 1488, 1551
TspRI CASTG 3 cut(s) 126, 1126, 1377
VneI GTGCAC 1 cut(s) 752
VpaK11BI GGWCC 7 cut(s) 827, 860, 956, 1239, 1415, 1908, 1946
XapI RAATTY 1 cut(s) 343
XbaI TCTAGA 3 cut(s) 392, 1981, 1994
XceI RCATGY 2 cut(s) 475, 732
XhoI CTCGAG 1 cut(s) 1455
XmaJI CCTAGG 1 cut(s) 1406
XmiI GTMKAC 3 cut(s) 429, 1129, 1584
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 6 cut(s) 153, 393, 1133, 1407, 1982, 1995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.