Rw2G016940

Rhamnogalacturonate lyase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
20543731 .. 20550082
6352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016940.1

Sequence Viewer

Length: 2205 bp
ATGGAGAAGGCGGATCGTCGGAGCTTGACGCATTGGGGTTTGCTTGTTGGGACATTAGCAGCAATGCTTGTTCTGGTTGTTTGCCTGGTTGGTGAAAAAAAATACGAGACGACCACCCCAAAGACCACCCTACAATTAAGAAAATTACTTCGGAGAGATCCTAGAACACTATGCCAGGGCATGAACATTCTGAAAATCCCTAGTAGCCGGAGGAACATTGCTAGACCACCAAATCCAGGGTTCAACATGGTAACAAAGAATAGTGGGCGGGGGATTGTTGCAAGAACACAATATCGGATAGTCACCATGCTAAAGACTCCTAGGCAGATTACGCTGGATAATGGCCTCATCCAACTAATAGTCTCTCGTCCCAGCGGAGATGTCGTTGGAATAAAATACAAACGAAGCGACAACTTGCTTGAACCCAATAATCTACGAAATAATAGAGGGTACTGGGATGTGGTCTGGAACAAACCGGGAGATAATATATATTATGTTGATAAACTACAAGCAACGAGATCTAGAGTTATTATGGCAACGGAAGACCAAGTTGAAATTTCTTTTGTCAAAACATATAATGTTTCCCAGCAGCGTGGTGCCCCAGAAGTTCCTTTGAATGTAGATAAAAGGTACATAATGCGACGCGGTTGTTCAGGGTTCTATGCGTATGCCATTTTCGAGTGCCTTGAAGGGTGGCCGGAAGTGAAGATTGATCAAGTTAGAATGGTTTACAAGCTTCAAAAAGACAAATTTCAGTATATGGCTTTATCAGACACTAGGCAAACATTCATGCCAAGAGCCAACGACCGTAAACATGGTCAGCAACTTGCCTATCCTGAAGCCGTTCGTTTGACCAAACCAAGTAATCAGGCCTTTAAAGGACAGGTCGATGACAAGTACCAGTACTCAATGGAGGACAAAGATAACAAGGTCCATGGATGGATTTCTACAGACCATTCGGTGGGATTCTGGATGATCACACCCAGTGATGAATTTCGTTCCGCTGGACCCATGAAGCAGGGCCTAACATCCCATGTTGGTCCAACTACCCTCTCGATGTTTGTTAGTACTCATTATGCTGGGAAGCGAGCGGGGATAGAATTGAAAAAAGGTGAGGCATGGAAAAAGGTTTTTGGGCCTGTCTTTGTGTATCTTAATTCCGCTCCAAGATCAAAAAATACCACCGGTACACTCTGGAATGATGCGAAGGAGCAGATGATTGAAGAAGTCAAAAGATGGCCATACAATTTCACTCAATCCAAAGACCTTCCTTCTTCAGATCAACGGGGATCGATTTGTGGTCGACTACATGATCGGTACATGAATGAGAGCCTTCTTTCGGAAAGTTCTGCATATGTGGGATTAGCTGCACCTGGAGAAGTGGGATCCTGGCAAACAGAAAGTAAGGGATACCAATTCTGGATTCGAGCTGACAAACAAAGTTATTTTCTCATTAAAGATGTTCGACCTGGGAACTATAGTCTGTATGCTTGGGTCCCAGGCATTGTTGGAGATTACAAATATGGGGCTGATATTACCATTAAACCAGGAAGTAAAATCAATTTGGGTAATCTTACTTATGAGCCTCCAAGAAATGGTCCTACCTTGTGGGAAATCGGTATCCCCGATCGAAGTGCCGCTGAGTTCTATGTACCGGATCCATATCCAACTCTCATGAACAAATTGTACAAAAACAATCACTCGGACAAGTTTAGACAATACGGGTTGTGGAAACGTTATGAAGAGCTGTACCCCCACCATGATCTTATCTACACCATTGGCATTAATGATTATCGTTATGATTGGTTCTATGCTCATGTGACCAGGAATATTGGAAAGCAAAAGTATGTGGGAACCACCTGGCAAATTCGATTTAAACTTAACAACGTCATGAGTCAAGGAAATTATACACTCCAATTAGCATTGGCGTCAGCTACTTCTTCAGAAATACAGGTTCGATTTAACAAACGGAGTATTGCGCCACCTCATTTTTCGACGGGGCTAATAGGAGGGGACAATGCCATAGCAAGACATGGAATTCATGGTTTGTATTGGTTCTTCAGTATTAATGTACCAAGTTCTCTGCTAAATGAAGGAAACAACACAATCTATCTTACTCAGTCCAGAGGGGGAGCACCTTTTCGAGGAGTCATGTATGACTATATTAGACTAGAAGGACCTTCCATTAGACATGCAGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

734

Amino Acids

84.04

Weight (kDa)

9.62

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 96 - 296 3.6e-74 Rhamnogalacturonate lyase family
fn3_3 PF14686 450 - 522 2.1e-24 Polysaccharide lyase family 4, domain II
CBM-like PF14683 535 - 724 1.7e-49 Polysaccharide lyase family 4, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65210 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT4G37950 AT4G37950 AT4G38030
fragaria_vesca FvH4_1g03290 FvH4_1g03300 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19200
malus_domestica MD01G1043200.v1.1 MD01G1043300.v1.1 MD02G1298500.v1.1 MD02G1307100.v1.1 MD04G1240500.v1.1 MD12G1256900.v1.1 MD12G1257400.v1.1 MD12G1257500.v1.1 MD15G1308100.v1.1 MD15G1308200.v1.1
prunus_persica Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1
pyrus_communis pycom01g07080 pycom15g27240
rosa_chinensis RchiOBHm_Chr2g0088421 RchiOBHm_Chr2g0088461 RchiOBHm_Chr2g0088481 RchiOBHm_Chr2g0110401 RchiOBHm_Chr2g0110411 RchiOBHm_Chr2g0110431
rosa_laevigata RLG00000003093 RLG00000015953 RLG00000015956 RLG00000015959 RLG00000017802 RLG00000017806
rosa_multiflora Rmu_sc0001393.1_g000003 Rmu_sc0001393.1_g000009 Rmu_sc0004733.1_g000013 Rmu_sc0004733.1_g000022
rosa_roxburghii Rroxscaffold_2G00133400 Rroxscaffold_2G00133420 Rroxscaffold_2G00152640 Rroxscaffold_2G00152680
rosa_rugosa Rorug01G0484000 Rorug01G0484200 Rorug01G0484600 Rorug02G0166800 Rorug02G0166900 Rorug02G0167000 Rorug02G0167500 Rorug02G0167600 Rorug02G0167800 Rorug02G0167800 Rorug07G0116100
rosa_samantha Rh2AG038500 Rh2AG038800 Rh2AG039000 Rh2AG219300 Rh2AG219400 Rh2BG038100 Rh2BG038400 Rh2BG228800 Rh2BG229000 Rh2CG039000 Rh2CG039600 Rh2CG221000 Rh2CG221200 Rh2DG038600 Rh2DG038800 Rh2DG225500 Rh2DG225600
rosa_wichuraiana Rw2G003060 Rw2G003080 Rw2G016930 Rw2G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 596
AccB7I CCANNNNNTGG 2 cut(s) 961, 1595
AccBSI CCGCTC 2 cut(s) 1091, 1163
AccI GTMKAC 1 cut(s) 1303
AccII CGCG 1 cut(s) 645
AciI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1638
AclI AACGTT 1 cut(s) 1735
AclWI GGATC 7 cut(s) 21, 152, 1297, 1380, 1393, 1652, 1665
AcoI YGGCCR 2 cut(s) 695, 1238
AcsI RAATTY 5 cut(s) 555, 749, 992, 1866, 2037
AcuI CTGAAG 4 cut(s) 858, 1260, 1926, 2044
AcyI GRCGYC 1 cut(s) 1928
AdeI CACNNNGTG 1 cut(s) 986
AfiI CCNNNNNNNGG 5 cut(s) 236, 961, 1339, 1595, 2144
AgeI ACCGGT 1 cut(s) 1184
AgsI TTSAA 8 cut(s) 244, 422, 554, 616, 689, 740, 1105, 1223
AjuI GAANNNNNNNTTGG 2 cut(s) 1407, 1439
AluBI AGCT 6 cut(s) 24, 736, 1367, 1430, 1747, 1934
AluI AGCT 6 cut(s) 24, 736, 1367, 1430, 1747, 1934
Alw21I GWGCWC 1 cut(s) 2137
Alw26I GTCTC 2 cut(s) 101, 367
AlwI GGATC 7 cut(s) 21, 152, 1297, 1380, 1393, 1652, 1665
AoxI GGCC 6 cut(s) 343, 695, 870, 1021, 1136, 1238
ApeKI GCWGC 3 cut(s) 59, 589, 1367
ApoI RAATTY 5 cut(s) 555, 749, 992, 1866, 2037
AseI ATTAAT 2 cut(s) 1785, 2067
AsiGI ACCGGT 1 cut(s) 1184
Asp700I GAANNNNTTC 1 cut(s) 843
AspA2I CCTAGG 1 cut(s) 320
AspLEI GCGC 1 cut(s) 1981
AspS9I GGNCC 8 cut(s) 931, 1007, 1021, 1040, 1136, 1495, 1598, 2177
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 104, 295, 1124
AvaII GGWCC 6 cut(s) 931, 1007, 1040, 1495, 1598, 2177
AvrII CCTAGG 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 601
BalI TGGCCA 1 cut(s) 1240
BamHI GGATCC 2 cut(s) 1385, 1657
BanI GGYRCC 1 cut(s) 596
BarI GAAGNNNNNNTAC 2 cut(s) 2042, 2074
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 2137
BbvI GCAGC 3 cut(s) 71, 601, 1354
BccI CCATC 2 cut(s) 933, 1230
BceAI ACGGC 1 cut(s) 827
BcgI CGANNNNNNTGC 2 cut(s) 1616, 1650
BciVI GTATCC 2 cut(s) 1403, 1631
BclI TGATCA 2 cut(s) 712, 975
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 101, 367
BfaI CTAG 7 cut(s) 162, 201, 222, 321, 522, 777, 2171
BfmI CTRYAG 2 cut(s) 948, 1477
BfuI GTATCC 2 cut(s) 1403, 1631
BglII AGATCT 1 cut(s) 518
BisI GCNGC 4 cut(s) 60, 590, 1368, 1638
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 4 cut(s) 61, 591, 1369, 1639
BmcAI AGTACT 2 cut(s) 905, 1069
Bme18I GGWCC 6 cut(s) 931, 1007, 1040, 1495, 1598, 2177
BmgT120I GGNCC 8 cut(s) 931, 1007, 1021, 1040, 1136, 1495, 1598, 2177
BmiI GGNNCC 7 cut(s) 598, 1009, 1387, 1496, 1497, 1659, 1855
BmrI ACTGGG 2 cut(s) 463, 978
BmsI GCATC 1 cut(s) 1192
BmuI ACTGGG 2 cut(s) 463, 978
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 1 cut(s) 1395
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 1292
BsaBI GATNNNNATC 1 cut(s) 1662
BsaHI GRCGYC 1 cut(s) 1928
BsaJI CCNNGG 6 cut(s) 175, 236, 320, 934, 1469, 1498
BsaWI WCCGGW 2 cut(s) 1184, 1654
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 5 cut(s) 236, 961, 1339, 1595, 2144
Bse118I RCCGGY 1 cut(s) 1184
Bse1I ACTGG 3 cut(s) 458, 901, 984
Bse3DI GCAATG 2 cut(s) 69, 216
Bse8I GATNNNNATC 1 cut(s) 1662
BseCI ATCGAT 1 cut(s) 1292
BseDI CCNNGG 6 cut(s) 175, 236, 320, 934, 1469, 1498
BseGI GGATG 5 cut(s) 348, 463, 944, 978, 1028
BseJI GATNNNNATC 1 cut(s) 1662
BseLI CCNNNNNNNGG 5 cut(s) 236, 961, 1339, 1595, 2144
BseMI GCAATG 2 cut(s) 69, 216
BseMII CTCAG 2 cut(s) 1632, 2132
BseNI ACTGG 3 cut(s) 458, 901, 984
BseRI GAGGAG 1 cut(s) 2160
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 3 cut(s) 71, 601, 1354
BseYI CCCAGC 3 cut(s) 371, 585, 1079
BsgI GTGCAG 1 cut(s) 1353
Bsh1236I CGCG 1 cut(s) 645
Bsh1285I CGRYCG 2 cut(s) 808, 1630
BshFI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BshNI GGYRCC 1 cut(s) 596
BshTI ACCGGT 1 cut(s) 1184
BshVI ATCGAT 1 cut(s) 1292
BsiEI CGRYCG 2 cut(s) 808, 1630
BsiHKAI GWGCWC 1 cut(s) 2137
BsiSI CCGG 5 cut(s) 208, 476, 698, 1185, 1655
BslFI GGGAC 4 cut(s) 64, 354, 1481, 2027
BslI CCNNNNNNNGG 5 cut(s) 236, 961, 1339, 1595, 2144
BsmAI GTCTC 2 cut(s) 101, 367
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 4 cut(s) 64, 354, 1481, 2027
BsnI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
Bsp1286I GDGCHC 2 cut(s) 601, 2137
Bsp1407I TGTACA 1 cut(s) 1686
Bsp19I CCATGG 1 cut(s) 934
BspACI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1638
BspANI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BspCNI CTCAG 2 cut(s) 1633, 2131
BspDI ATCGAT 1 cut(s) 1292
BspFNI CGCG 1 cut(s) 645
BspHI TCATGA 2 cut(s) 1674, 1890
BspLI GGNNCC 7 cut(s) 598, 1009, 1387, 1496, 1497, 1659, 1855
BspPI GGATC 7 cut(s) 21, 152, 1297, 1380, 1393, 1652, 1665
BspQI GCTCTTC 1 cut(s) 1737
BspT107I GGYRCC 1 cut(s) 596
BsrBI CCGCTC 2 cut(s) 1091, 1163
BsrDI GCAATG 2 cut(s) 69, 216
BsrFI RCCGGY 1 cut(s) 1184
BsrGI TGTACA 1 cut(s) 1686
BsrI ACTGG 3 cut(s) 458, 901, 984
BssAI RCCGGY 1 cut(s) 1184
BssECI CCNNGG 6 cut(s) 175, 236, 320, 934, 1469, 1498
BssNI GRCGYC 1 cut(s) 1928
BssT1I CCWWGG 2 cut(s) 320, 934
Bst4CI ACNGT 1 cut(s) 809
Bst6I CTCTTC 1 cut(s) 1737
BstACI GRCGYC 1 cut(s) 1928
BstAUI TGTACA 1 cut(s) 1686
BstC8I GCNNGC 1 cut(s) 1089
BstDEI CTNAG 2 cut(s) 1641, 2118
BstDSI CCRYGG 1 cut(s) 934
BstENI CCTNNNNNAGG 1 cut(s) 2142
BstF5I GGATG 5 cut(s) 348, 463, 944, 978, 1028
BstFNI CGCG 1 cut(s) 645
BstHHI GCGC 1 cut(s) 1981
BstMAI GTCTC 2 cut(s) 101, 367
BstMCI CGRYCG 2 cut(s) 808, 1630
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 2195
BstSFI CTRYAG 2 cut(s) 948, 1477
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 3 cut(s) 71, 601, 1354
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 4 cut(s) 157, 518, 1385, 1657
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 4 cut(s) 157, 518, 1385, 1657
Bsu15I ATCGAT 1 cut(s) 1292
BsuI GTATCC 2 cut(s) 1403, 1631
BsuRI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BsuTUI ATCGAT 1 cut(s) 1292
BtgI CCRYGG 1 cut(s) 934
BtsCI GGATG 5 cut(s) 348, 463, 944, 978, 1028
BtsIMutI CAGTG 1 cut(s) 991
Cac8I GCNNGC 1 cut(s) 1089
CciI TCATGA 2 cut(s) 1674, 1890
CfoI GCGC 1 cut(s) 1981
Cfr10I RCCGGY 1 cut(s) 1184
Cfr13I GGNCC 8 cut(s) 931, 1007, 1021, 1040, 1136, 1495, 1598, 2177
ClaI ATCGAT 1 cut(s) 1292
CseI GACGC 3 cut(s) 37, 651, 1917
CspAI ACCGGT 1 cut(s) 1184
DdeI CTNAG 2 cut(s) 1641, 2118
DraI TTTAAA 2 cut(s) 877, 1876
DraIII CACNNNGTG 1 cut(s) 986
EaeI YGGCCR 2 cut(s) 695, 1238
Eam1104I CTCTTC 1 cut(s) 1737
EarI CTCTTC 1 cut(s) 1737
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 320, 934
Eco147I AGGCCT 1 cut(s) 872
Eco47I GGWCC 6 cut(s) 931, 1007, 1040, 1495, 1598, 2177
Eco57I CTGAAG 4 cut(s) 858, 1260, 1926, 2044
EcoNI CCTNNNNNAGG 1 cut(s) 2142
EcoO109I RGGNCCY 3 cut(s) 1021, 1495, 2177
EcoRI GAATTC 1 cut(s) 2037
EcoT14I CCWWGG 2 cut(s) 320, 934
ErhI CCWWGG 2 cut(s) 320, 934
Esp3I CGTCTC 1 cut(s) 101
FaqI GGGAC 4 cut(s) 64, 354, 1481, 2027
FauI CCCGC 2 cut(s) 261, 1084
FauNDI CATATG 1 cut(s) 1354
FbaI TGATCA 2 cut(s) 712, 975
FblI GTMKAC 1 cut(s) 1303
Fnu4HI GCNGC 4 cut(s) 60, 590, 1368, 1638
FokI GGATG 5 cut(s) 335, 470, 951, 985, 1015
Fsp4HI GCNGC 4 cut(s) 60, 590, 1368, 1638
FspBI CTAG 7 cut(s) 162, 201, 222, 321, 522, 777, 2171
GlaI GCGC 1 cut(s) 1980
GluI GCNGC 4 cut(s) 60, 590, 1368, 1638
GsaI CCCAGC 3 cut(s) 375, 589, 1083
GsuI CTGGAG 1 cut(s) 1395
HaeIII GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
HapII CCGG 5 cut(s) 208, 476, 698, 1185, 1655
HgaI GACGC 3 cut(s) 37, 651, 1917
HhaI GCGC 1 cut(s) 1981
Hin1I GRCGYC 1 cut(s) 1928
Hin6I GCGC 1 cut(s) 1979
HinP1I GCGC 1 cut(s) 1979
HincII GTYRAC 1 cut(s) 1304
HindII GTYRAC 1 cut(s) 1304
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 5 cut(s) 316, 966, 1423, 1894, 2148
HpaII CCGG 5 cut(s) 208, 476, 698, 1185, 1655
HphI GGTGA 3 cut(s) 104, 295, 1124
Hpy166II GTNNAC 4 cut(s) 730, 812, 1190, 1304
Hpy188I TCNGA 9 cut(s) 21, 153, 192, 297, 772, 1279, 1342, 1705, 1945
Hpy8I GTNNAC 4 cut(s) 730, 812, 1190, 1304
Hpy99I CGWCG 3 cut(s) 21, 645, 1999
HpyAV CCTTC 8 cut(s) 683, 1201, 1277, 1281, 1343, 2087, 2168, 2190
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4IV ACGT 2 cut(s) 1735, 1887
HpyCH4V TGCA 4 cut(s) 281, 1352, 1370, 2195
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 1641, 2118
HpySE526I ACGT 2 cut(s) 1735, 1887
Hsp92I GRCGYC 1 cut(s) 1928
HspAI GCGC 1 cut(s) 1979
KflI GGGWCCC 1 cut(s) 1495
Ksp22I TGATCA 2 cut(s) 712, 975
LguI GCTCTTC 1 cut(s) 1737
LmnI GCTCC 4 cut(s) 21, 1168, 1210, 2132
Lsp1109I GCAGC 3 cut(s) 71, 601, 1354
LweI GCATC 1 cut(s) 1192
MaeI CTAG 7 cut(s) 162, 201, 222, 321, 522, 777, 2171
MaeII ACGT 2 cut(s) 1735, 1887
MaeIII GTNAC 3 cut(s) 250, 301, 1819
MbiI CCGCTC 2 cut(s) 1091, 1163
MboII GAAGA 7 cut(s) 554, 718, 1235, 1266, 1754, 1932, 2050
MflI RGATCY 4 cut(s) 157, 518, 1385, 1657
MhlI GDGCHC 2 cut(s) 601, 2137
MlsI TGGCCA 1 cut(s) 1240
MluNI TGGCCA 1 cut(s) 1240
MlyI GAGTC 3 cut(s) 310, 1903, 2157
MmeI TCCRAC 5 cut(s) 367, 376, 1067, 1489, 1691
Mox20I TGGCCA 1 cut(s) 1240
MroXI GAANNNNTTC 1 cut(s) 843
MscI TGGCCA 1 cut(s) 1240
Msp20I TGGCCA 1 cut(s) 1240
MspA1I CMGCKG 3 cut(s) 375, 1004, 1640
MspI CCGG 5 cut(s) 208, 476, 698, 1185, 1655
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 934
NdeI CATATG 1 cut(s) 1354
NlaIV GGNNCC 7 cut(s) 598, 1009, 1387, 1496, 1497, 1659, 1855
NmuCI GTSAC 2 cut(s) 301, 1819
NspI RCATGY 1 cut(s) 2195
PagI TCATGA 2 cut(s) 1674, 1890
PceI AGGCCT 1 cut(s) 872
PciSI GCTCTTC 1 cut(s) 1737
PcsI WCGNNNNNNNCGW 1 cut(s) 1623
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 2 cut(s) 966, 1423
PflMI CCANNNNNTGG 2 cut(s) 961, 1595
PinAI ACCGGT 1 cut(s) 1184
PkrI GCNGC 4 cut(s) 61, 591, 1369, 1639
Ple19I CGATCG 1 cut(s) 1630
PleI GAGTC 3 cut(s) 310, 1902, 2156
PpsI GAGTC 3 cut(s) 310, 1902, 2156
PpuMI RGGWCCY 2 cut(s) 1495, 2177
PshBI ATTAAT 2 cut(s) 1785, 2067
Psp1406I AACGTT 1 cut(s) 1735
Psp5II RGGWCCY 2 cut(s) 1495, 2177
PspFI CCCAGC 3 cut(s) 371, 585, 1079
PspN4I GGNNCC 7 cut(s) 598, 1009, 1387, 1496, 1497, 1659, 1855
PspPI GGNCC 8 cut(s) 931, 1007, 1021, 1040, 1136, 1495, 1598, 2177
PspPPI RGGWCCY 2 cut(s) 1495, 2177
PsrI GAACNNNNNNTAC 2 cut(s) 1670, 1702
PsuI RGATCY 4 cut(s) 157, 518, 1385, 1657
PvuI CGATCG 1 cut(s) 1630
SalI GTCGAC 1 cut(s) 1302
SapI GCTCTTC 1 cut(s) 1737
SatI GCNGC 4 cut(s) 60, 590, 1368, 1638
Sau96I GGNCC 8 cut(s) 931, 1007, 1021, 1040, 1136, 1495, 1598, 2177
ScaI AGTACT 2 cut(s) 905, 1069
SchI GAGTC 3 cut(s) 310, 1903, 2157
SduI GDGCHC 2 cut(s) 601, 2137
SfaNI GCATC 1 cut(s) 1192
SfcI CTRYAG 2 cut(s) 948, 1477
SinI GGWCC 6 cut(s) 931, 1007, 1040, 1495, 1598, 2177
SseBI AGGCCT 1 cut(s) 872
SsiI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1638
SspI AATATT 1 cut(s) 1831
SspMI CTAG 7 cut(s) 162, 201, 222, 321, 522, 777, 2171
StuI AGGCCT 1 cut(s) 872
StyI CCWWGG 2 cut(s) 320, 934
TaaI ACNGT 1 cut(s) 809
TaiI ACGT 2 cut(s) 1738, 1890
TatI WGTACW 3 cut(s) 903, 1067, 1686
TauI GCSGC 1 cut(s) 1640
TfiI GAWTC 2 cut(s) 966, 1423
TscAI CASTG 1 cut(s) 991
TseFI GTSAC 2 cut(s) 301, 1819
TseI GCWGC 3 cut(s) 59, 589, 1367
Tsp45I GTSAC 2 cut(s) 301, 1819
TspDTI ATGAA 9 cut(s) 197, 778, 1005, 1028, 1337, 1691, 1755, 2030, 2106
TspGWI ACGGA 2 cut(s) 554, 1984
TspRI CASTG 1 cut(s) 991
Van91I CCANNNNNTGG 2 cut(s) 961, 1595
VpaK11BI GGWCC 6 cut(s) 931, 1007, 1040, 1495, 1598, 2177
VspI ATTAAT 2 cut(s) 1785, 2067
XagI CCTNNNNNAGG 1 cut(s) 2142
XapI RAATTY 5 cut(s) 555, 749, 992, 1866, 2037
XbaI TCTAGA 1 cut(s) 521
XceI RCATGY 1 cut(s) 2195
XmaJI CCTAGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 1303
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 7 cut(s) 162, 201, 222, 321, 522, 777, 2171
ZrmI AGTACT 2 cut(s) 905, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.