MD02G1307100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000523
Physical Location & Seq
Forward (+)
36235761 .. 36241581
5821 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1307100.v1.1.491

Sequence Viewer

Length: 180 bp
ATGACTGCGGCTGTGACAAAGCTTTTCATAGTGGTCAGGATGGTAAAGGGTACTACCAGTTTTCTGCCGACTCTGATTCCACACTTCAGAAAGTACAGGTACTGGGACATTGTTTGGAACAGAGCTGGAGGTGACGATGTGGTGGAAAACTCATTTGCAGGCTACAAGGACTGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.88

Weight (kDa)

9.6

Isoelectric Point (pI)

-1.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65210 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT4G37950 AT4G37950 AT4G38030
fragaria_vesca FvH4_1g03290 FvH4_1g03300 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19200
malus_domestica MD01G1043200.v1.1 MD01G1043300.v1.1 MD02G1298500.v1.1 MD02G1307100.v1.1 MD04G1240500.v1.1 MD12G1256900.v1.1 MD12G1257400.v1.1 MD12G1257500.v1.1 MD15G1308100.v1.1 MD15G1308200.v1.1
prunus_persica Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1
pyrus_communis pycom01g07080 pycom15g27240
rosa_chinensis RchiOBHm_Chr2g0088421 RchiOBHm_Chr2g0088461 RchiOBHm_Chr2g0088481 RchiOBHm_Chr2g0110401 RchiOBHm_Chr2g0110411 RchiOBHm_Chr2g0110431
rosa_laevigata RLG00000003093 RLG00000015953 RLG00000015956 RLG00000015959 RLG00000017802 RLG00000017806
rosa_multiflora Rmu_sc0001393.1_g000003 Rmu_sc0001393.1_g000009 Rmu_sc0004733.1_g000013 Rmu_sc0004733.1_g000022
rosa_roxburghii Rroxscaffold_2G00133400 Rroxscaffold_2G00133420 Rroxscaffold_2G00152640 Rroxscaffold_2G00152680
rosa_rugosa Rorug01G0484000 Rorug01G0484200 Rorug01G0484600 Rorug02G0166800 Rorug02G0166900 Rorug02G0167000 Rorug02G0167500 Rorug02G0167600 Rorug02G0167800 Rorug02G0167800 Rorug07G0116100
rosa_samantha Rh2AG038500 Rh2AG038800 Rh2AG039000 Rh2AG219300 Rh2AG219400 Rh2BG038100 Rh2BG038400 Rh2BG228800 Rh2BG229000 Rh2CG039000 Rh2CG039600 Rh2CG221000 Rh2CG221200 Rh2DG038600 Rh2DG038800 Rh2DG225500 Rh2DG225600
rosa_wichuraiana Rw2G003060 Rw2G003080 Rw2G016930 Rw2G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 70
AfaI GTAC 3 cut(s) 52, 95, 101
AluBI AGCT 2 cut(s) 22, 125
AluI AGCT 2 cut(s) 22, 125
AlwNI CAGNNNCTG 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 143
BccI CCATC 1 cut(s) 34
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 147
Bse1I ACTGG 3 cut(s) 57, 107, 176
BseGI GGATG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 57, 107, 176
BslFI GGGAC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 119
BspACI CCGC 1 cut(s) 8
BsrI ACTGG 3 cut(s) 57, 107, 176
BstC8I GCNNGC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 160
CaiI CAGNNNCTG 1 cut(s) 102
Csp6I GTAC 3 cut(s) 51, 94, 100
CviJI RGCY 4 cut(s) 11, 22, 125, 162
CviKI_1 RGCY 4 cut(s) 11, 22, 125, 162
CviQI GTAC 3 cut(s) 51, 94, 100
Eco57I CTGAAG 1 cut(s) 70
FaiI YATR 2 cut(s) 29, 178
FaqI GGGAC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 70, 76
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 75, 89
Hpy188III TCNNGA 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 158
LpnPI CCDG 7 cut(s) 22, 70, 82, 88, 111, 144, 157
MaeIII GTNAC 2 cut(s) 13, 131
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 1 cut(s) 122
NmuCI GTSAC 2 cut(s) 13, 131
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 102
RsaI GTAC 3 cut(s) 52, 95, 101
RsaNI GTAC 3 cut(s) 51, 94, 100
SatI GCNGC 1 cut(s) 9
SchI GAGTC 1 cut(s) 64
SetI ASST 4 cut(s) 24, 101, 127, 133
SgeI CNNG 6 cut(s) 49, 69, 109, 115, 138, 171
SsiI CCGC 1 cut(s) 8
TatI WGTACW 1 cut(s) 93
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 76
TseFI GTSAC 2 cut(s) 13, 131
Tsp45I GTSAC 2 cut(s) 13, 131
TspDTI ATGAA 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.