Rh2DG225600

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000523
Physical Location & Seq
Forward (+)
22083289 .. 22091973
8685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG225600.1

Sequence Viewer

Length: 1752 bp
ATGGAGAAGGCGGATCGTCGGAGCTTGACGCATTGGGGTTTGCTTGTTGGGACATTAGCAGCAATGCTTGTTCTGGTTGTTTGCCTGGTTGGTGAAAAAAAATACGAGACGACCACCCCGAAGACCACCCTACAATTAAGAAAATTACTTCGGAGAGATCCTAGAACACTATGCCAGGGCATGAACATTCTGAAAATCCCTTGTAGCCGGAGGAACATTGCTAGACCACCAAATCCAGGGTTCAACATGGTAACAAAGAATAGTGGGCGGAGGATTGTTGCAAGAACACAATATCGGATAGTCACGATGCTAAAGACTCCTAGGCAGATTACGCTGGATAATGGCCTCATCCAACTAATAGTCTCTCGTCCCAGCGGAGATGTCGTTGGAATAAAATACAAACGAAGCGACAACTTGCTTGAACCCAATAATCTACGAAATAATAGAGGGTACTGGGATGTGGTCTGGAACAAACCGGGAGATAATATATATTATGTTGATAAACTACAAGCAACGAGATCTAGAGTTATTATGGCAACAGAAGACCAAGTTGAAATTTCTTTTGTCAAAACATATAATGTTTCCCAGCAGCGTGGTGCCCCTGAAGTTCCTTTGAATGTAGATAAAAGGTACATAATGCGACGCGGTCGTTCAGGGTTCTATGCGTATGCCATATTCGAGTGCCTTGAAGGGTGGCCGGAAGTGAAGATTGATCAAGTTAGAATGGTTTACAAGCTTCAAAAAGACAAATTTCAGTATATGGCTTTATCAGACACTAGGCAAACATTCATGCCAAGAGCCAACGACCGTAAACATGGTCAGCAACTTGCCTATCCTGAAGCCGTTCGTTTGACCAAACCAAGTAATCAGGCCTTTAAAGGACAGGTCGATGACAAGTACCAGTACTCAATGGAGGACAAAGATAACAAGGTCCATGGATGGATTTCTACAGACCATTCGGTGGGATTCTGGATGATCACACCCAGTGATGAATTTCGTTCCGCTGGACCCATGAAGCAGGGCCTAACATCCCATGTTGGTCCAACTACCCTCTCGATGTTTGTTAGTACTCATTATGCTGGGAAGCGAGCGGGGATAGAATTGAAAAAAGGTGAGGCATGGAACAAGGTTTTTGGGCCTGTCTTTGTGTATCTTAATTCCGCTCCAAGATCAAAAAATACCACCGGTACACTCTGGAATAATGCGAAGGAGCAGATGATTGAAGAAGTCAAAAGATGGCCATACAATTTCACTCAATCCAAAGACCTTCCTTCTTCAGATCAACGGGGATCGATTTGTGGTCGACTAATAGTACATGATCGGTACATGAATGAGAGCCTTCTTTCGGAAAGTTCTGCATATGTGGGATTAGCTGCACCTGGAGAAGTGGGATCCTGGCAAACAGAAAGTAAGGGATACCAATTCTGGATTCGAGCTGACAAACAAAGTTATTTTCTCATTAAAGATGTTCGACCTGGGAACTATAGTCTGTATGCTTGGGTCCCAGGCATTGTTGGAGATTACAAATATGGGGCTGATATTACCATTAAACCAGGAAGTAAAATCAATTTGGGTAATCTTACTTATGAGCCTCCAAGAAATGGTCCTACCTTGTGGGAAATCGGTATCCCCGATCGAAGTGCCGCTGAGTTCTATGTACCGGATCCATATCCAACTCTCATGAACAAATTGTACAAAAACAATCACTCGGACAAGTTAGTTATCATATTACCAACCACTTTGTTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

583

Amino Acids

66.65

Weight (kDa)

9.64

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 95 - 296 3.4e-73 Rhamnogalacturonate lyase family
fn3_3 PF14686 452 - 524 1.5e-24 Polysaccharide lyase family 4, domain II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65210 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT4G37950 AT4G37950 AT4G38030
fragaria_vesca FvH4_1g03290 FvH4_1g03300 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19200
malus_domestica MD01G1043200.v1.1 MD01G1043300.v1.1 MD02G1298500.v1.1 MD02G1307100.v1.1 MD04G1240500.v1.1 MD12G1256900.v1.1 MD12G1257400.v1.1 MD12G1257500.v1.1 MD15G1308100.v1.1 MD15G1308200.v1.1
prunus_persica Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1
pyrus_communis pycom01g07080 pycom15g27240
rosa_chinensis RchiOBHm_Chr2g0088421 RchiOBHm_Chr2g0088461 RchiOBHm_Chr2g0088481 RchiOBHm_Chr2g0110401 RchiOBHm_Chr2g0110411 RchiOBHm_Chr2g0110431
rosa_laevigata RLG00000003093 RLG00000015953 RLG00000015956 RLG00000015959 RLG00000017802 RLG00000017806
rosa_multiflora Rmu_sc0001393.1_g000003 Rmu_sc0001393.1_g000009 Rmu_sc0004733.1_g000013 Rmu_sc0004733.1_g000022
rosa_roxburghii Rroxscaffold_2G00133400 Rroxscaffold_2G00133420 Rroxscaffold_2G00152640 Rroxscaffold_2G00152680
rosa_rugosa Rorug01G0484000 Rorug01G0484200 Rorug01G0484600 Rorug02G0166800 Rorug02G0166900 Rorug02G0167000 Rorug02G0167500 Rorug02G0167600 Rorug02G0167800 Rorug02G0167800 Rorug07G0116100
rosa_samantha Rh2AG038500 Rh2AG038800 Rh2AG039000 Rh2AG219300 Rh2AG219400 Rh2BG038100 Rh2BG038400 Rh2BG228800 Rh2BG229000 Rh2CG039000 Rh2CG039600 Rh2CG221000 Rh2CG221200 Rh2DG038600 Rh2DG038800 Rh2DG225500 Rh2DG225600
rosa_wichuraiana Rw2G003060 Rw2G003080 Rw2G016930 Rw2G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 596
AccB7I CCANNNNNTGG 2 cut(s) 961, 1601
AccBSI CCGCTC 2 cut(s) 1091, 1163
AccI GTMKAC 1 cut(s) 1303
AccII CGCG 1 cut(s) 645
AciI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1644
AclWI GGATC 7 cut(s) 21, 152, 1297, 1386, 1399, 1658, 1671
AcoI YGGCCR 2 cut(s) 695, 1238
AcsI RAATTY 3 cut(s) 555, 749, 992
AcuI CTGAAG 3 cut(s) 624, 858, 1260
AdeI CACNNNGTG 1 cut(s) 986
AfiI CCNNNNNNNGG 4 cut(s) 236, 961, 1345, 1601
AgeI ACCGGT 1 cut(s) 1184
AgsI TTSAA 8 cut(s) 244, 422, 554, 616, 689, 740, 1105, 1223
AjnI CCWGG 8 cut(s) 84, 174, 235, 1378, 1394, 1474, 1504, 1552
AjuI GAANNNNNNNTTGG 2 cut(s) 1413, 1445
AluBI AGCT 4 cut(s) 24, 736, 1373, 1436
AluI AGCT 4 cut(s) 24, 736, 1373, 1436
Alw26I GTCTC 2 cut(s) 101, 367
AlwI GGATC 7 cut(s) 21, 152, 1297, 1386, 1399, 1658, 1671
AoxI GGCC 6 cut(s) 343, 695, 870, 1021, 1136, 1238
ApeKI GCWGC 3 cut(s) 59, 589, 1373
ApoI RAATTY 3 cut(s) 555, 749, 992
AsiGI ACCGGT 1 cut(s) 1184
Asp700I GAANNNNTTC 1 cut(s) 843
AspA2I CCTAGG 1 cut(s) 320
AspS9I GGNCC 7 cut(s) 931, 1007, 1021, 1040, 1136, 1501, 1604
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 104, 1124
AvaII GGWCC 5 cut(s) 931, 1007, 1040, 1501, 1604
AvrII CCTAGG 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 601
BalI TGGCCA 1 cut(s) 1240
BamHI GGATCC 2 cut(s) 1391, 1663
BanI GGYRCC 1 cut(s) 596
BbsI GAAGAC 2 cut(s) 128, 549
BbvI GCAGC 3 cut(s) 71, 601, 1360
BccI CCATC 2 cut(s) 933, 1230
BceAI ACGGC 1 cut(s) 827
BcgI CGANNNNNNTGC 2 cut(s) 1622, 1656
BciT130I CCWGG 8 cut(s) 86, 176, 237, 1380, 1396, 1476, 1506, 1554
BciVI GTATCC 2 cut(s) 1409, 1637
BclI TGATCA 2 cut(s) 712, 975
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 101, 367
BfaI CTAG 5 cut(s) 162, 222, 321, 522, 777
BfmI CTRYAG 2 cut(s) 948, 1483
BfuI GTATCC 2 cut(s) 1409, 1637
BglII AGATCT 1 cut(s) 518
BisI GCNGC 4 cut(s) 60, 590, 1374, 1644
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 4 cut(s) 61, 591, 1375, 1645
BmcAI AGTACT 2 cut(s) 905, 1069
Bme1390I CCNGG 9 cut(s) 86, 176, 237, 477, 1380, 1396, 1476, 1506, 1554
Bme18I GGWCC 5 cut(s) 931, 1007, 1040, 1501, 1604
BmgT120I GGNCC 7 cut(s) 931, 1007, 1021, 1040, 1136, 1501, 1604
BmiI GGNNCC 6 cut(s) 598, 1009, 1393, 1502, 1503, 1665
BmrFI CCNGG 9 cut(s) 86, 176, 237, 477, 1380, 1396, 1476, 1506, 1554
BmrI ACTGGG 2 cut(s) 463, 978
BmsI GCATC 1 cut(s) 297
BmuI ACTGGG 2 cut(s) 463, 978
BpiI GAAGAC 2 cut(s) 128, 549
BpmI CTGGAG 1 cut(s) 1401
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 1292
BsaBI GATNNNNATC 1 cut(s) 1668
BsaJI CCNNGG 6 cut(s) 175, 236, 320, 934, 1475, 1504
BsaWI WCCGGW 2 cut(s) 1184, 1660
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 961, 1345, 1601
Bse118I RCCGGY 1 cut(s) 1184
Bse1I ACTGG 3 cut(s) 458, 901, 984
Bse3DI GCAATG 2 cut(s) 69, 216
Bse8I GATNNNNATC 1 cut(s) 1668
BseBI CCWGG 8 cut(s) 86, 176, 237, 1380, 1396, 1476, 1506, 1554
BseCI ATCGAT 1 cut(s) 1292
BseDI CCNNGG 6 cut(s) 175, 236, 320, 934, 1475, 1504
BseGI GGATG 5 cut(s) 348, 463, 944, 978, 1028
BseJI GATNNNNATC 1 cut(s) 1668
BseLI CCNNNNNNNGG 4 cut(s) 236, 961, 1345, 1601
BseMI GCAATG 2 cut(s) 69, 216
BseMII CTCAG 1 cut(s) 1638
BseNI ACTGG 3 cut(s) 458, 901, 984
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 3 cut(s) 71, 601, 1360
BseYI CCCAGC 3 cut(s) 371, 585, 1079
BsgI GTGCAG 1 cut(s) 1359
Bsh1236I CGCG 1 cut(s) 645
Bsh1285I CGRYCG 3 cut(s) 649, 808, 1636
BshFI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BshNI GGYRCC 1 cut(s) 596
BshTI ACCGGT 1 cut(s) 1184
BshVI ATCGAT 1 cut(s) 1292
BsiEI CGRYCG 3 cut(s) 649, 808, 1636
BsiSI CCGG 5 cut(s) 208, 476, 698, 1185, 1661
BslFI GGGAC 3 cut(s) 64, 354, 1487
BslI CCNNNNNNNGG 4 cut(s) 236, 961, 1345, 1601
BsmAI GTCTC 2 cut(s) 101, 367
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 3 cut(s) 64, 354, 1487
BsnI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
Bsp1286I GDGCHC 1 cut(s) 601
Bsp1407I TGTACA 1 cut(s) 1692
Bsp19I CCATGG 1 cut(s) 934
BspACI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1644
BspANI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BspCNI CTCAG 1 cut(s) 1639
BspDI ATCGAT 1 cut(s) 1292
BspFNI CGCG 1 cut(s) 645
BspHI TCATGA 1 cut(s) 1680
BspLI GGNNCC 6 cut(s) 598, 1009, 1393, 1502, 1503, 1665
BspPI GGATC 7 cut(s) 21, 152, 1297, 1386, 1399, 1658, 1671
BspT107I GGYRCC 1 cut(s) 596
BsrBI CCGCTC 2 cut(s) 1091, 1163
BsrDI GCAATG 2 cut(s) 69, 216
BsrFI RCCGGY 1 cut(s) 1184
BsrGI TGTACA 1 cut(s) 1692
BsrI ACTGG 3 cut(s) 458, 901, 984
BssAI RCCGGY 1 cut(s) 1184
BssECI CCNNGG 6 cut(s) 175, 236, 320, 934, 1475, 1504
BssT1I CCWWGG 2 cut(s) 320, 934
Bst2UI CCWGG 8 cut(s) 86, 176, 237, 1380, 1396, 1476, 1506, 1554
Bst4CI ACNGT 1 cut(s) 809
BstAUI TGTACA 1 cut(s) 1692
BstC8I GCNNGC 1 cut(s) 1089
BstDEI CTNAG 1 cut(s) 1647
BstDSI CCRYGG 1 cut(s) 934
BstF5I GGATG 5 cut(s) 348, 463, 944, 978, 1028
BstFNI CGCG 1 cut(s) 645
BstMAI GTCTC 2 cut(s) 101, 367
BstMCI CGRYCG 3 cut(s) 649, 808, 1636
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 8 cut(s) 86, 176, 237, 1380, 1396, 1476, 1506, 1554
BstSCI CCNGG 9 cut(s) 84, 174, 235, 475, 1378, 1394, 1474, 1504, 1552
BstSFI CTRYAG 2 cut(s) 948, 1483
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 3 cut(s) 71, 601, 1360
BstV2I GAAGAC 2 cut(s) 128, 549
BstX2I RGATCY 4 cut(s) 157, 518, 1391, 1663
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 4 cut(s) 157, 518, 1391, 1663
Bsu15I ATCGAT 1 cut(s) 1292
BsuI GTATCC 2 cut(s) 1409, 1637
BsuRI GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
BsuTUI ATCGAT 1 cut(s) 1292
BtgI CCRYGG 1 cut(s) 934
BtsCI GGATG 5 cut(s) 348, 463, 944, 978, 1028
BtsIMutI CAGTG 1 cut(s) 991
Cac8I GCNNGC 1 cut(s) 1089
CciI TCATGA 1 cut(s) 1680
Cfr10I RCCGGY 1 cut(s) 1184
Cfr13I GGNCC 7 cut(s) 931, 1007, 1021, 1040, 1136, 1501, 1604
ClaI ATCGAT 1 cut(s) 1292
CseI GACGC 2 cut(s) 37, 651
CspAI ACCGGT 1 cut(s) 1184
DdeI CTNAG 1 cut(s) 1647
DraI TTTAAA 1 cut(s) 877
DraIII CACNNNGTG 1 cut(s) 986
EaeI YGGCCR 2 cut(s) 695, 1238
EciI GGCGGA 2 cut(s) 26, 283
Eco130I CCWWGG 2 cut(s) 320, 934
Eco147I AGGCCT 1 cut(s) 872
Eco47I GGWCC 5 cut(s) 931, 1007, 1040, 1501, 1604
Eco57I CTGAAG 3 cut(s) 624, 858, 1260
EcoO109I RGGNCCY 2 cut(s) 1021, 1501
EcoRII CCWGG 8 cut(s) 84, 174, 235, 1378, 1394, 1474, 1504, 1552
EcoT14I CCWWGG 2 cut(s) 320, 934
ErhI CCWWGG 2 cut(s) 320, 934
Esp3I CGTCTC 1 cut(s) 101
FaqI GGGAC 3 cut(s) 64, 354, 1487
FauI CCCGC 1 cut(s) 1084
FauNDI CATATG 1 cut(s) 1360
FbaI TGATCA 2 cut(s) 712, 975
FblI GTMKAC 1 cut(s) 1303
Fnu4HI GCNGC 4 cut(s) 60, 590, 1374, 1644
FokI GGATG 5 cut(s) 335, 470, 951, 985, 1015
Fsp4HI GCNGC 4 cut(s) 60, 590, 1374, 1644
FspBI CTAG 5 cut(s) 162, 222, 321, 522, 777
GluI GCNGC 4 cut(s) 60, 590, 1374, 1644
GsaI CCCAGC 3 cut(s) 375, 589, 1083
GsuI CTGGAG 1 cut(s) 1401
HaeIII GGCC 6 cut(s) 345, 697, 872, 1023, 1138, 1240
HapII CCGG 5 cut(s) 208, 476, 698, 1185, 1661
HgaI GACGC 2 cut(s) 37, 651
HincII GTYRAC 1 cut(s) 1304
HindII GTYRAC 1 cut(s) 1304
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 3 cut(s) 316, 966, 1429
HpaII CCGG 5 cut(s) 208, 476, 698, 1185, 1661
HphI GGTGA 2 cut(s) 104, 1124
Hpy166II GTNNAC 4 cut(s) 730, 812, 1190, 1304
Hpy188I TCNGA 8 cut(s) 21, 153, 192, 297, 772, 1279, 1348, 1711
Hpy188III TCNNGA 9 cut(s) 304, 466, 522, 836, 970, 1054, 1195, 1426, 1681
Hpy8I GTNNAC 4 cut(s) 730, 812, 1190, 1304
Hpy99I CGWCG 2 cut(s) 21, 645
HpyAV CCTTC 5 cut(s) 683, 1201, 1277, 1281, 1349
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4V TGCA 3 cut(s) 281, 1358, 1376
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 1 cut(s) 1647
KflI GGGWCCC 1 cut(s) 1501
Ksp22I TGATCA 2 cut(s) 712, 975
LmnI GCTCC 3 cut(s) 21, 1168, 1210
Lsp1109I GCAGC 3 cut(s) 71, 601, 1360
LweI GCATC 1 cut(s) 297
MaeI CTAG 5 cut(s) 162, 222, 321, 522, 777
MaeIII GTNAC 2 cut(s) 250, 301
MbiI CCGCTC 2 cut(s) 1091, 1163
MboII GAAGA 5 cut(s) 133, 554, 718, 1235, 1266
MflI RGATCY 4 cut(s) 157, 518, 1391, 1663
MhlI GDGCHC 1 cut(s) 601
MlsI TGGCCA 1 cut(s) 1240
MluNI TGGCCA 1 cut(s) 1240
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 5 cut(s) 367, 376, 1067, 1495, 1697
MnlI CCTC 8 cut(s) 204, 264, 356, 440, 907, 1061, 1108, 1602
Mox20I TGGCCA 1 cut(s) 1240
MroXI GAANNNNTTC 1 cut(s) 843
MscI TGGCCA 1 cut(s) 1240
MseI TTAA 5 cut(s) 137, 876, 1155, 1461, 1548
Msp20I TGGCCA 1 cut(s) 1240
MspA1I CMGCKG 3 cut(s) 375, 1004, 1646
MspI CCGG 5 cut(s) 208, 476, 698, 1185, 1661
MspR9I CCNGG 9 cut(s) 86, 176, 237, 477, 1380, 1396, 1476, 1506, 1554
MvaI CCWGG 8 cut(s) 86, 176, 237, 1380, 1396, 1476, 1506, 1554
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 934
NdeI CATATG 1 cut(s) 1360
NlaIV GGNNCC 6 cut(s) 598, 1009, 1393, 1502, 1503, 1665
NmuCI GTSAC 1 cut(s) 301
PagI TCATGA 1 cut(s) 1680
PceI AGGCCT 1 cut(s) 872
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 1629
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 2 cut(s) 966, 1429
PflFI GACNNNGTC 1 cut(s) 645
PflMI CCANNNNNTGG 2 cut(s) 961, 1601
PinAI ACCGGT 1 cut(s) 1184
PkrI GCNGC 4 cut(s) 61, 591, 1375, 1645
Ple19I CGATCG 1 cut(s) 1636
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 1501
Psp5II RGGWCCY 1 cut(s) 1501
Psp6I CCWGG 8 cut(s) 84, 174, 235, 1378, 1394, 1474, 1504, 1552
PspFI CCCAGC 3 cut(s) 371, 585, 1079
PspGI CCWGG 8 cut(s) 84, 174, 235, 1378, 1394, 1474, 1504, 1552
PspN4I GGNNCC 6 cut(s) 598, 1009, 1393, 1502, 1503, 1665
PspPI GGNCC 7 cut(s) 931, 1007, 1021, 1040, 1136, 1501, 1604
PspPPI RGGWCCY 1 cut(s) 1501
PsrI GAACNNNNNNTAC 2 cut(s) 1676, 1708
PsuI RGATCY 4 cut(s) 157, 518, 1391, 1663
PsyI GACNNNGTC 1 cut(s) 645
PvuI CGATCG 1 cut(s) 1636
SalI GTCGAC 1 cut(s) 1302
SaqAI TTAA 5 cut(s) 137, 876, 1155, 1461, 1548
SatI GCNGC 4 cut(s) 60, 590, 1374, 1644
Sau96I GGNCC 7 cut(s) 931, 1007, 1021, 1040, 1136, 1501, 1604
ScaI AGTACT 2 cut(s) 905, 1069
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 9 cut(s) 86, 176, 237, 477, 1380, 1396, 1476, 1506, 1554
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 2 cut(s) 948, 1483
SinI GGWCC 5 cut(s) 931, 1007, 1040, 1501, 1604
SseBI AGGCCT 1 cut(s) 872
SsiI CCGC 8 cut(s) 11, 268, 375, 645, 1002, 1091, 1161, 1644
SspMI CTAG 5 cut(s) 162, 222, 321, 522, 777
StuI AGGCCT 1 cut(s) 872
StyD4I CCNGG 9 cut(s) 84, 174, 235, 475, 1378, 1394, 1474, 1504, 1552
StyI CCWWGG 2 cut(s) 320, 934
TaaI ACNGT 1 cut(s) 809
TaqI TCGA 8 cut(s) 678, 888, 1055, 1292, 1303, 1432, 1471, 1636
TatI WGTACW 4 cut(s) 903, 1067, 1312, 1692
TauI GCSGC 1 cut(s) 1646
TfiI GAWTC 2 cut(s) 966, 1429
Tru1I TTAA 5 cut(s) 137, 876, 1155, 1461, 1548
Tru9I TTAA 5 cut(s) 137, 876, 1155, 1461, 1548
TscAI CASTG 1 cut(s) 991
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 3 cut(s) 59, 589, 1373
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 6 cut(s) 197, 778, 1005, 1028, 1343, 1697
TspRI CASTG 1 cut(s) 991
Tth111I GACNNNGTC 1 cut(s) 645
Van91I CCANNNNNTGG 2 cut(s) 961, 1601
VpaK11BI GGWCC 5 cut(s) 931, 1007, 1040, 1501, 1604
XapI RAATTY 3 cut(s) 555, 749, 992
XbaI TCTAGA 1 cut(s) 521
XmaJI CCTAGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 1303
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 5 cut(s) 162, 222, 321, 522, 777
ZrmI AGTACT 2 cut(s) 905, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.