Rh2BG038100

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000523
Physical Location & Seq
Forward (+)
2645828 .. 2647930
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG038100.1

Sequence Viewer

Length: 2103 bp
ATGATCAACATCTACGCCATAGGAGATTTACAAATCCGGAAAGTAGTTTGGAAAGTGAGAAGATCGATGAGGAAATCAGGTGGGTGGATTCTGGGGACGTTATTATTTTTGGGTGGTTTTTTCTTTGTTCATGTTGCGGCAAGATCACCGAGAAGTCATCGACTACCGCCACAAGATGCGGTCGAGATCAAGATGGTAAAACATGGAGTTGTTTTGGATAATAAGCTTGTTCAACTAACTTTTTCTAATCCTGGTGGGGATGTTATTGGAATAAGGTATGGAGGAATTGACAACTTACTTGAAATTAACAATGACGAAGGTGATAGAGGGTACTGGGATGTGGTTTGGAGTAACCCGGGAGAGACGAAAAACACACAATATAGACTACATGGAACACTATTTAAAGTTATCACGGCGAGGCCAGACCAAGTAGAAGTTTCTTTCATCACCACATACAATGCCAGCCTCCACAGGGGCGTGACAGTTCCGGTGAATGTTGACAAAAGGTACATAATTCAGCGAGGACGTTCCGGGTTCTATACATATGCCATCTTTGAGCGTCTTGAAGGGTGGCCGGGAGGGGACATGGAGACACTTAGAGTGGCTTACAAGCTTCATCAAGCCAAGTTTCGATATATGGCGCTATCGGACACTAGGCAAAGGTTCATGCCAACAGCCGATGAGCGAGCACGCGGCAGGCCACTTGCATTCAAAGAAGCTGTTCTACTGAACAATGAGACGAGCAGTCCTGAATTTGAAGGGGAGGTGGATGATAAGTATCAGTACTCGGCCGAGGACAAAGATATCAAGGTGCATGGTTGGATTTCTATTGATGACCAATCACCACCGGTGGGATTTTGGATGATCACACCTAGTGATGAGTTTCGTATAGCTGGTCCTTTCAAGCAGGACCTCACCTCCCACGTTGGACCAACTTCCCTAACTGTGTTTTCTTCTCATCATTATGCTGGTAAAGGTGTTGGGCTGACATTTCAAGATGGTGAGGCATGGAAAAAGGTTTTCGGACCTGTCTTTATCTATCTTAACTCGGCAGCTCGAAACTCAGGTAATGGTCCTTCAACGATCCGTACACTATGGAACAATGCCAAAGATCAAATGCTTGAAGAAGTCAAAAGTTGGCCATACAATTTCATTAGTTCTCAAGACTTTCCTTCTTCGGATCAACGTGGATCAGTTTCAGGCCGGTTACTAGTACATGATCGATACATTGAAAGTCTTCCTCGGGCAAGTTTGGCTTACGTAGGATTGGCTGCACCCGGAGAAGTTGGATCATGGCAAAGGGAAAGCAAGGGATACCAATTTTGGACTCAAACCGATGAAAAAGGCTATTTCCTCATTGAAAATATTAGACCCGGTAACTATAATTTGTATGCATCTGTTCCAGGGATAGTTGGAGACTACAAATATGAGGTTGACATTACAATTGAACCAGGAAGTAAAATCCAATTGGCTAGTATTACTTACGAACCTCCGAGAACCGGTCCTACATTGTGGGAAATTGGCATTCCTGATCGCACAGCTGCGGAGTTCTACATACCGGATCCATATCCAACTCTCATGAACAAGTTGTACAAGGGGAGTCGGTTGGACAAGTTTAGGCAATACGGGTTGTGGTCACGTTATTATGAGCATTACCCTAACAATGACCTCATCTATCTTGTTGGTGCTAACAATTACAGTGAGGATTGGTTTTATGCTCAAGTGACTAGAAGTGTAGGAAATGGCCGGTATGTAGGAACTACATGGCGGATACAGTTTGAACTCAACAATGTGGTCAATCCCGGAAACTATACACTTCAACTGGCCTTGGCATCAGCCACTTATGCAGAATTGCAAGTTCGGGTTAACAATTTGAATGCCGAACCACCTCTTTTTTCGACAGGGCTAATAGGTGACGACAATGCTATAGCAAGACATGGAATTCATGGCTTATACTGGTTATGGAGTATTGATGTACCGAGCACTCTGCTACGCGACGGAAGCAACACCATCTATCTTACTCAGTCCAGAGATGGCAATTCACCTTTCCAAGGAGTCATGTATGATTATATAAGACTAGAAGGACCTTCTGAGAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

700

Amino Acids

79.39

Weight (kDa)

6.73

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 57 - 256 4.3e-72 Rhamnogalacturonate lyase family
fn3_3 PF14686 418 - 490 2.1e-24 Polysaccharide lyase family 4, domain II
CBM-like PF14683 503 - 693 1.1e-49 Polysaccharide lyase family 4, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65210 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT2G22620 AT4G37950 AT4G37950 AT4G38030
fragaria_vesca FvH4_1g03290 FvH4_1g03300 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19194 FvH4_1g19200
malus_domestica MD01G1043200.v1.1 MD01G1043300.v1.1 MD02G1298500.v1.1 MD02G1307100.v1.1 MD04G1240500.v1.1 MD12G1256900.v1.1 MD12G1257400.v1.1 MD12G1257500.v1.1 MD15G1308100.v1.1 MD15G1308200.v1.1
prunus_persica Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1 Prupe.6G208400_v2.0.a1
pyrus_communis pycom01g07080 pycom15g27240
rosa_chinensis RchiOBHm_Chr2g0088421 RchiOBHm_Chr2g0088461 RchiOBHm_Chr2g0088481 RchiOBHm_Chr2g0110401 RchiOBHm_Chr2g0110411 RchiOBHm_Chr2g0110431
rosa_laevigata RLG00000003093 RLG00000015953 RLG00000015956 RLG00000015959 RLG00000017802 RLG00000017806
rosa_multiflora Rmu_sc0001393.1_g000003 Rmu_sc0001393.1_g000009 Rmu_sc0004733.1_g000013 Rmu_sc0004733.1_g000022
rosa_roxburghii Rroxscaffold_2G00133400 Rroxscaffold_2G00133420 Rroxscaffold_2G00152640 Rroxscaffold_2G00152680
rosa_rugosa Rorug01G0484000 Rorug01G0484200 Rorug01G0484600 Rorug02G0166800 Rorug02G0166900 Rorug02G0167000 Rorug02G0167500 Rorug02G0167600 Rorug02G0167800 Rorug02G0167800 Rorug07G0116100
rosa_samantha Rh2AG038500 Rh2AG038800 Rh2AG039000 Rh2AG219300 Rh2AG219400 Rh2BG038100 Rh2BG038400 Rh2BG228800 Rh2BG229000 Rh2CG039000 Rh2CG039600 Rh2CG221000 Rh2CG221200 Rh2DG038600 Rh2DG038800 Rh2DG225500 Rh2DG225600
rosa_wichuraiana Rw2G003060 Rw2G003080 Rw2G016930 Rw2G016940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 693, 1995
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 6 cut(s) 137, 167, 179, 693, 1544, 1768
AclWI GGATC 6 cut(s) 1078, 1188, 1198, 1297, 1556, 1569
AcoI YGGCCR 4 cut(s) 572, 789, 1139, 1744
AcsI RAATTY 2 cut(s) 752, 1941
AdeI CACNNNGTG 1 cut(s) 875
AfaI GTAC 7 cut(s) 332, 509, 785, 1090, 1215, 1592, 1977
AfiI CCNNNNNNNGG 4 cut(s) 472, 851, 1499, 2051
AgeI ACCGGT 2 cut(s) 847, 1499
AhdI GACNNNNNGTC 1 cut(s) 744
AhlI ACTAGT 1 cut(s) 1210
AjnI CCWGG 3 cut(s) 250, 1402, 1450
AluBI AGCT 6 cut(s) 226, 613, 719, 893, 1055, 1541
AluI AGCT 6 cut(s) 226, 613, 719, 893, 1055, 1541
Alw21I GWGCWC 2 cut(s) 691, 1985
Alw26I GTCTC 4 cut(s) 356, 584, 731, 1410
AlwI GGATC 6 cut(s) 1078, 1188, 1198, 1297, 1556, 1569
Ama87I CYCGRG 2 cut(s) 355, 1242
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 8 cut(s) 419, 572, 698, 789, 1139, 1201, 1744, 1824
ApeKI GCWGC 3 cut(s) 1052, 1271, 1541
ApoI RAATTY 2 cut(s) 752, 1941
AsiGI ACCGGT 2 cut(s) 847, 1499
Asp700I GAANNNNTTC 2 cut(s) 720, 1236
AspLEI GCGC 1 cut(s) 643
AspS9I GGNCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
AsuC2I CCSGG 7 cut(s) 356, 357, 532, 576, 1278, 1374, 1803
AsuHPI GGTGA 9 cut(s) 138, 332, 439, 502, 834, 907, 1013, 1925, 2034
AvaI CYCGRG 2 cut(s) 355, 1242
AvaII GGWCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
BalI TGGCCA 1 cut(s) 1141
BamHI GGATCC 1 cut(s) 1561
BarI GAAGNNNNNNTAC 4 cut(s) 708, 740, 1060, 1092
BbsI GAAGAC 1 cut(s) 1229
Bbv12I GWGCWC 2 cut(s) 691, 1985
BbvI GCAGC 3 cut(s) 1064, 1258, 1528
BccI CCATC 5 cut(s) 187, 557, 992, 2018, 2027
BceAI ACGGC 1 cut(s) 429
BcgI CGANNNNNNTGC 2 cut(s) 1969, 2003
BciT130I CCWGG 3 cut(s) 252, 1404, 1452
BciVI GTATCC 2 cut(s) 1307, 1764
BclI TGATCA 2 cut(s) 3, 864
BcnI CCSGG 7 cut(s) 356, 357, 532, 576, 1278, 1374, 1803
BcoDI GTCTC 4 cut(s) 356, 584, 731, 1410
BcuI ACTAGT 1 cut(s) 1210
BfaI CTAG 6 cut(s) 654, 873, 1211, 1473, 1728, 2078
BfmI CTRYAG 1 cut(s) 1926
BfoI RGCGCY 1 cut(s) 644
BfuI GTATCC 2 cut(s) 1307, 1764
BisI GCNGC 5 cut(s) 138, 694, 1053, 1272, 1542
BlsI GCNGC 5 cut(s) 139, 695, 1054, 1273, 1543
BmcAI AGTACT 1 cut(s) 785
Bme18I GGWCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
BmeRI GACNNNNNGTC 1 cut(s) 744
BmeT110I CYCGRG 2 cut(s) 355, 1242
BmgT120I GGNCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
BmiI GGNNCC 1 cut(s) 1563
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 3 cut(s) 166, 1403, 1841
BmuI ACTGGG 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 1229
BpuEI CTTGAG 2 cut(s) 1146, 1704
BpuMI CCSGG 7 cut(s) 356, 357, 532, 576, 1278, 1374, 1803
Bsa29I ATCGAT 2 cut(s) 65, 1222
BsaAI YACGTR 1 cut(s) 1261
BsaBI GATNNNNATC 3 cut(s) 8, 777, 1566
BsaJI CCNNGG 6 cut(s) 355, 792, 1241, 1403, 1827, 2050
BsaWI WCCGGW 5 cut(s) 36, 487, 847, 1499, 1558
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bsc4I CCNNNNNNNGG 4 cut(s) 472, 851, 1499, 2051
Bse118I RCCGGY 4 cut(s) 847, 1203, 1499, 1746
Bse1I ACTGG 3 cut(s) 338, 1827, 1961
Bse8I GATNNNNATC 3 cut(s) 8, 777, 1566
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 3 cut(s) 252, 1404, 1452
BseCI ATCGAT 2 cut(s) 65, 1222
BseDI CCNNGG 6 cut(s) 355, 792, 1241, 1403, 1827, 2050
BseGI GGATG 4 cut(s) 265, 343, 775, 867
BseJI GATNNNNATC 3 cut(s) 8, 777, 1566
BseLI CCNNNNNNNGG 4 cut(s) 472, 851, 1499, 2051
BseMII CTCAG 3 cut(s) 1077, 2036, 2082
BseNI ACTGG 3 cut(s) 338, 1827, 1961
BseX3I CGGCCG 1 cut(s) 789
BseXI GCAGC 3 cut(s) 1064, 1258, 1528
BsgI GTGCAG 1 cut(s) 1257
Bsh1236I CGCG 2 cut(s) 693, 1995
Bsh1285I CGRYCG 2 cut(s) 183, 792
BshFI GGCC 8 cut(s) 421, 574, 700, 791, 1141, 1203, 1746, 1826
BshTI ACCGGT 2 cut(s) 847, 1499
BshVI ATCGAT 2 cut(s) 65, 1222
BsiEI CGRYCG 2 cut(s) 183, 792
BsiHKAI GWGCWC 2 cut(s) 691, 1985
BsiHKCI CYCGRG 2 cut(s) 355, 1242
BslFI GGGAC 2 cut(s) 109, 596
BslI CCNNNNNNNGG 4 cut(s) 472, 851, 1499, 2051
BsmAI GTCTC 4 cut(s) 356, 584, 731, 1410
BsmBI CGTCTC 2 cut(s) 356, 731
BsmFI GGGAC 2 cut(s) 109, 596
BsmI GAATGC 3 cut(s) 707, 1524, 1882
BsnI GGCC 8 cut(s) 421, 574, 700, 791, 1141, 1203, 1746, 1826
BsoBI CYCGRG 2 cut(s) 355, 1242
Bsp1286I GDGCHC 2 cut(s) 691, 1985
Bsp13I TCCGGA 1 cut(s) 36
Bsp1407I TGTACA 1 cut(s) 1590
BspACI CCGC 6 cut(s) 137, 167, 179, 693, 1544, 1768
BspANI GGCC 8 cut(s) 421, 574, 700, 791, 1141, 1203, 1746, 1826
BspCNI CTCAG 3 cut(s) 1076, 2035, 2083
BspDI ATCGAT 2 cut(s) 65, 1222
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 2 cut(s) 693, 1995
BspHI TCATGA 1 cut(s) 1578
BspLI GGNNCC 1 cut(s) 1563
BspPI GGATC 6 cut(s) 1078, 1188, 1198, 1297, 1556, 1569
BsrFI RCCGGY 4 cut(s) 847, 1203, 1499, 1746
BsrGI TGTACA 1 cut(s) 1590
BsrI ACTGG 3 cut(s) 338, 1827, 1961
BssAI RCCGGY 4 cut(s) 847, 1203, 1499, 1746
BssECI CCNNGG 6 cut(s) 355, 792, 1241, 1403, 1827, 2050
BssT1I CCWWGG 2 cut(s) 1827, 2050
Bst2UI CCWGG 3 cut(s) 252, 1404, 1452
Bst4CI ACNGT 4 cut(s) 484, 946, 1700, 1776
BstAUI TGTACA 1 cut(s) 1590
BstBAI YACGTR 1 cut(s) 1261
BstC8I GCNNGC 4 cut(s) 463, 687, 691, 698
BstDEI CTNAG 4 cut(s) 596, 1063, 2022, 2091
BstENI CCTNNNNNAGG 1 cut(s) 2049
BstF5I GGATG 4 cut(s) 265, 343, 775, 867
BstFNI CGCG 2 cut(s) 693, 1995
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 1 cut(s) 643
BstMAI GTCTC 4 cut(s) 356, 584, 731, 1410
BstMCI CGRYCG 2 cut(s) 183, 792
BstMWI GCNNNNNNNGC 3 cut(s) 1253, 1844, 2001
BstNI CCWGG 3 cut(s) 252, 1404, 1452
BstSFI CTRYAG 1 cut(s) 1926
BstSNI TACGTA 1 cut(s) 1261
BstUI CGCG 2 cut(s) 693, 1995
BstV1I GCAGC 3 cut(s) 1064, 1258, 1528
BstV2I GAAGAC 1 cut(s) 1229
BstX2I RGATCY 1 cut(s) 1561
BstYI RGATCY 1 cut(s) 1561
BstZI CGGCCG 1 cut(s) 789
Bsu15I ATCGAT 2 cut(s) 65, 1222
BsuI GTATCC 2 cut(s) 1307, 1764
BsuRI GGCC 8 cut(s) 421, 574, 700, 791, 1141, 1203, 1746, 1826
BsuTUI ATCGAT 2 cut(s) 65, 1222
BtsCI GGATG 4 cut(s) 265, 343, 775, 867
BtsIMutI CAGTG 1 cut(s) 1705
Cac8I GCNNGC 4 cut(s) 463, 687, 691, 698
CciI TCATGA 1 cut(s) 1578
CfoI GCGC 1 cut(s) 643
Cfr10I RCCGGY 4 cut(s) 847, 1203, 1499, 1746
Cfr13I GGNCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
Cfr9I CCCGGG 1 cut(s) 355
ClaI ATCGAT 2 cut(s) 65, 1222
CseI GACGC 1 cut(s) 548
Csp6I GTAC 7 cut(s) 331, 508, 784, 1089, 1214, 1591, 1976
CspAI ACCGGT 2 cut(s) 847, 1499
CviQI GTAC 7 cut(s) 331, 508, 784, 1089, 1214, 1591, 1976
DdeI CTNAG 4 cut(s) 596, 1063, 2022, 2091
DraI TTTAAA 1 cut(s) 403
DraIII CACNNNGTG 1 cut(s) 875
DriI GACNNNNNGTC 1 cut(s) 744
EaeI YGGCCR 4 cut(s) 572, 789, 1139, 1744
EagI CGGCCG 1 cut(s) 789
Eam1105I GACNNNNNGTC 1 cut(s) 744
EciI GGCGGA 1 cut(s) 1783
EclXI CGGCCG 1 cut(s) 789
Eco105I TACGTA 1 cut(s) 1261
Eco130I CCWWGG 2 cut(s) 1827, 2050
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
Eco52I CGGCCG 1 cut(s) 789
Eco88I CYCGRG 2 cut(s) 355, 1242
EcoNI CCTNNNNNAGG 1 cut(s) 2049
EcoO109I RGGNCCY 2 cut(s) 910, 2084
EcoRI GAATTC 1 cut(s) 1941
EcoRII CCWGG 3 cut(s) 250, 1402, 1450
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 2 cut(s) 1827, 2050
EcoT22I ATGCAT 1 cut(s) 1396
ErhI CCWWGG 2 cut(s) 1827, 2050
Esp3I CGTCTC 2 cut(s) 356, 731
FalI AAGNNNNNCTT 2 cut(s) 1240, 1272
FaqI GGGAC 2 cut(s) 109, 596
FauNDI CATATG 1 cut(s) 544
FbaI TGATCA 2 cut(s) 3, 864
Fnu4HI GCNGC 5 cut(s) 138, 694, 1053, 1272, 1542
FokI GGATG 4 cut(s) 272, 350, 782, 874
Fsp4HI GCNGC 5 cut(s) 138, 694, 1053, 1272, 1542
FspBI CTAG 6 cut(s) 654, 873, 1211, 1473, 1728, 2078
GlaI GCGC 1 cut(s) 642
GluI GCNGC 5 cut(s) 138, 694, 1053, 1272, 1542
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 8 cut(s) 421, 574, 700, 791, 1141, 1203, 1746, 1826
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 643
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HincII GTYRAC 3 cut(s) 499, 1435, 1867
HindII GTYRAC 3 cut(s) 499, 1435, 1867
HindIII AAGCTT 2 cut(s) 224, 611
HinfI GANTC 4 cut(s) 88, 1327, 1600, 2055
HpaI GTTAAC 1 cut(s) 1867
HphI GGTGA 9 cut(s) 138, 332, 439, 502, 834, 907, 1013, 1925, 2034
Hpy166II GTNNAC 4 cut(s) 499, 1091, 1435, 1867
Hpy188I TCNGA 5 cut(s) 649, 1025, 1180, 1494, 2092
Hpy8I GTNNAC 4 cut(s) 499, 1091, 1435, 1867
Hpy99I CGWCG 1 cut(s) 2000
HpyAV CCTTC 7 cut(s) 311, 560, 752, 1086, 1182, 2075, 2097
HpyCH4III ACNGT 4 cut(s) 484, 946, 1700, 1776
HpyCH4IV ACGT 6 cut(s) 98, 526, 924, 1186, 1260, 1639
HpyCH4V TGCA 6 cut(s) 707, 814, 1274, 1394, 1847, 1855
HpyF10VI GCNNNNNNNGC 3 cut(s) 1253, 1844, 2001
HpyF3I CTNAG 4 cut(s) 596, 1063, 2022, 2091
HpySE526I ACGT 6 cut(s) 98, 526, 924, 1186, 1260, 1639
HspAI GCGC 1 cut(s) 641
Kpn2I TCCGGA 1 cut(s) 36
Ksp22I TGATCA 2 cut(s) 3, 864
KspAI GTTAAC 1 cut(s) 1867
Lsp1109I GCAGC 3 cut(s) 1064, 1258, 1528
LweI GCATC 3 cut(s) 166, 1403, 1841
MaeI CTAG 6 cut(s) 654, 873, 1211, 1473, 1728, 2078
MaeII ACGT 6 cut(s) 98, 526, 924, 1186, 1260, 1639
MaeIII GTNAC 7 cut(s) 350, 478, 1206, 1376, 1635, 1723, 1913
MboII GAAGA 5 cut(s) 72, 945, 1136, 1167, 1229
MfeI CAATTG 2 cut(s) 1443, 1466
MflI RGATCY 1 cut(s) 1561
MhlI GDGCHC 2 cut(s) 691, 1985
MlsI TGGCCA 1 cut(s) 1141
MluNI TGGCCA 1 cut(s) 1141
MlyI GAGTC 3 cut(s) 1321, 1609, 2064
MmeI TCCRAC 6 cut(s) 800, 907, 1267, 1393, 1587, 1595
Mox20I TGGCCA 1 cut(s) 1141
Mph1103I ATGCAT 1 cut(s) 1396
MroI TCCGGA 1 cut(s) 36
MroXI GAANNNNTTC 2 cut(s) 720, 1236
MscI TGGCCA 1 cut(s) 1141
MseI TTAA 4 cut(s) 306, 402, 1044, 1866
MslI CAYNNNNRTG 1 cut(s) 963
Msp20I TGGCCA 1 cut(s) 1141
MspA1I CMGCKG 1 cut(s) 1541
MunI CAATTG 2 cut(s) 1443, 1466
Mva1269I GAATGC 3 cut(s) 707, 1524, 1882
MvaI CCWGG 3 cut(s) 252, 1404, 1452
MvnI CGCG 2 cut(s) 693, 1995
MwoI GCNNNNNNNGC 3 cut(s) 1253, 1844, 2001
NciI CCSGG 7 cut(s) 356, 357, 532, 576, 1278, 1374, 1803
NdeI CATATG 1 cut(s) 544
NlaIV GGNNCC 1 cut(s) 1563
NmeAIII GCCGAG 3 cut(s) 767, 817, 1028
NmuCI GTSAC 4 cut(s) 478, 1635, 1723, 1913
NsiI ATGCAT 1 cut(s) 1396
PagI TCATGA 1 cut(s) 1578
PctI GAATGC 3 cut(s) 707, 1524, 1882
PdmI GAANNNNTTC 2 cut(s) 720, 1236
PfeI GAWTC 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 1801
PinAI ACCGGT 2 cut(s) 847, 1499
PkrI GCNGC 5 cut(s) 139, 695, 1054, 1273, 1543
PleI GAGTC 3 cut(s) 1321, 1608, 2063
PpsI GAGTC 3 cut(s) 1321, 1608, 2063
Ppu21I YACGTR 1 cut(s) 1261
PpuMI RGGWCCY 2 cut(s) 910, 2084
Psp5II RGGWCCY 2 cut(s) 910, 2084
Psp6I CCWGG 3 cut(s) 250, 1402, 1450
PspGI CCWGG 3 cut(s) 250, 1402, 1450
PspN4I GGNNCC 1 cut(s) 1563
PspPI GGNCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
PspPPI RGGWCCY 2 cut(s) 910, 2084
PsrI GAACNNNNNNTAC 4 cut(s) 1489, 1521, 1574, 1606
PsuI RGATCY 1 cut(s) 1561
PvuII CAGCTG 1 cut(s) 1541
RsaI GTAC 7 cut(s) 332, 509, 785, 1090, 1215, 1592, 1977
RsaNI GTAC 7 cut(s) 331, 508, 784, 1089, 1214, 1591, 1976
RseI CAYNNNNRTG 1 cut(s) 963
SaqAI TTAA 4 cut(s) 306, 402, 1044, 1866
SatI GCNGC 5 cut(s) 138, 694, 1053, 1272, 1542
Sau96I GGNCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
ScaI AGTACT 1 cut(s) 785
SchI GAGTC 3 cut(s) 1321, 1609, 2064
SduI GDGCHC 2 cut(s) 691, 1985
SfaNI GCATC 3 cut(s) 166, 1403, 1841
SfcI CTRYAG 1 cut(s) 1926
SgrAI CRCCGGYG 1 cut(s) 847
SinI GGWCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
SmaI CCCGGG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 963
SmlI CTYRAG 2 cut(s) 1161, 1719
SmoI CTYRAG 2 cut(s) 1161, 1719
SnaBI TACGTA 1 cut(s) 1261
SpeI ACTAGT 1 cut(s) 1210
SsiI CCGC 6 cut(s) 137, 167, 179, 693, 1544, 1768
SspI AATATT 1 cut(s) 1366
SspMI CTAG 6 cut(s) 654, 873, 1211, 1473, 1728, 2078
StyI CCWWGG 2 cut(s) 1827, 2050
TaaI ACNGT 4 cut(s) 484, 946, 1700, 1776
TaiI ACGT 6 cut(s) 101, 529, 927, 1189, 1263, 1642
TaqI TCGA 7 cut(s) 65, 160, 183, 631, 1057, 1222, 1898
TatI WGTACW 3 cut(s) 783, 1213, 1590
TauI GCSGC 2 cut(s) 140, 696
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 4 cut(s) 306, 402, 1044, 1866
Tru9I TTAA 4 cut(s) 306, 402, 1044, 1866
TscAI CASTG 1 cut(s) 1705
TseFI GTSAC 4 cut(s) 478, 1635, 1723, 1913
TseI GCWGC 3 cut(s) 1052, 1271, 1541
Tsp45I GTSAC 4 cut(s) 478, 1635, 1723, 1913
TspDTI ATGAA 8 cut(s) 119, 433, 605, 655, 1141, 1353, 1595, 1934
TspGWI ACGGA 2 cut(s) 1076, 2013
TspMI CCCGGG 1 cut(s) 355
TspRI CASTG 1 cut(s) 1705
VpaK11BI GGWCC 7 cut(s) 896, 910, 929, 1025, 1073, 1502, 2084
XagI CCTNNNNNAGG 1 cut(s) 2049
XapI RAATTY 2 cut(s) 752, 1941
XmaI CCCGGG 1 cut(s) 355
XmnI GAANNNNTTC 2 cut(s) 720, 1236
XspI CTAG 6 cut(s) 654, 873, 1211, 1473, 1728, 2078
ZrmI AGTACT 1 cut(s) 785
Zsp2I ATGCAT 1 cut(s) 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.