Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

90883 .. 91347

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCTTACCGGTGTATGCGATGTCGTGCTTCCGGCTTTCAAAGCTGCTATGCAAGAAGTTAACAAGTGCGATGACGGAATTTTGGTGGAGTTCTTGCGAAAACAAAAGGAAGATCTCATGGGTAGCTTGGCAGAAATTATGCAAATCTAAAGAAGATGATGGTGGTTTGGGTTTTCGGGATTTAGGTTGGTTTAACCAAGCTCTTCTTGCAAAACAATCTTTCCGGATTATACACCAACCACATACGCTACTATCTCGACTTCTCCGTAGCCGATATTTCCCACATAGCTCAATGATGGAGTGTAGTGTTGGGACAAGACCTTCATATGCTTGGAGAAGTATCATTCATGGCAGAGAACTCCTCTCTCGCGGGCTCCTAAGGACGATTGGAGACGGTATACACACGAAGGTTTGGTTAGACAGATGGATAATGGATGAGACACCTCTACCTCCACTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_10

Protein Analysis

154

Amino Acids

17.97

Weight (kDa)

9.87

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	400
AccII	CGCG	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	225
AciI	CCGC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	80
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	42
AluBI	AGCT	4 cut(s)	46, 128, 203, 291
AluI	AGCT	4 cut(s)	46, 128, 203, 291
Alw26I	GTCTC	2 cut(s)	387, 434
Aor13HI	TCCGGA	1 cut(s)	225
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	80
AsiGI	ACCGGT	1 cut(s)	10
AxyI	CCTNAGG	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	155, 292, 420
BcoDI	GTCTC	2 cut(s)	387, 434
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BsaWI	WCCGGW	2 cut(s)	10, 225
Bse118I	RCCGGY	1 cut(s)	10
Bse21I	CCTNAGG	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	225
BseGI	GGATG	1 cut(s)	442
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	11, 34, 226
BslFI	GGGAC	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	387, 434
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp13I	TCCGGA	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	1 cut(s)	114
BssNAI	GTATAC	1 cut(s)	401
Bst1107I	GTATAC	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	2 cut(s)	387, 434
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 209
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BstZ17I	GTATAC	1 cut(s)	401
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	2 cut(s)	35, 86
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	2 cut(s)	120, 350
CviJI	RGCY	8 cut(s)	5, 37, 46, 128, 203, 273, 291, 376
CviKI_1	RGCY	8 cut(s)	5, 37, 46, 128, 203, 273, 291, 376
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	378
Eco81I	CCTNAGG	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	2 cut(s)	123, 353
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	119, 349
FauI	CCCGC	1 cut(s)	365
FauNDI	CATATG	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	11, 34, 226
Hin1II	CATG	2 cut(s)	123, 353
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	3 cut(s)	11, 34, 226
Hpy166II	GTNNAC	2 cut(s)	63, 401
Hpy188III	TCNNGA	3 cut(s)	179, 226, 258
Hpy8I	GTNNAC	2 cut(s)	63, 401
HpyAV	CCTTC	2 cut(s)	333, 403
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	54, 144, 212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 209
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	2 cut(s)	123, 353
Kpn2I	TCCGGA	1 cut(s)	225
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	114
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	381
LpnPI	CCDG	3 cut(s)	24, 47, 239
Lsp1109I	GCAGC	1 cut(s)	33
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	3 cut(s)	124, 167, 197
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	3 cut(s)	80, 137, 460
MnlI	CCTC	3 cut(s)	374, 456, 462
MroI	TCCGGA	1 cut(s)	225
MseI	TTAA	2 cut(s)	62, 195
MspI	CCGG	3 cut(s)	11, 34, 226
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	43, 209
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	123, 353
NlaIV	GGNNCC	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	62, 195
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	9 cut(s)	48, 130, 190, 205, 293, 325, 414, 448, 454
Sse9I	AATT	3 cut(s)	80, 137, 460
SsiI	CCGC	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	259
TasI	AATT	3 cut(s)	80, 137, 460
Tru1I	TTAA	2 cut(s)	62, 195
Tru9I	TTAA	2 cut(s)	62, 195
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	315, 338
TspGWI	ACGGA	2 cut(s)	92, 257
TspRI	CASTG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.