Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005279.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

28495 .. 29622

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005279.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgtgtcaaatacgccgtatggtgatgtctataaacctctgtgggattccttatatatggaatgcacgcgtccccggtagggttaagatgtgtacttggaaggcttgcatggacattctccctactcgagtttatctccggcgcaaggtagggcgtacaccctctgctatctggcggggtttgatgtggggaaaacaagtgttggatggagggacaaggtggaggatcggcgatggaaggagagtcagtattcgttctgatcgatggattcctaacccggtaagttttaaagctgtgagtccgcttcaggtacccgaacagcaaaaggttgagtccctcttcacagcgtcgggcgcatggaatgtccccttgattaaaaaggcctttttgtcacatgaagctgatatgatactgagtttgccactagggttgagaaacattcctcctagtgccagggatactgatacatctttatatgccaatttgtttctctcaattgagcctgttattgaagacacgagagcaatgctgcgtaattttcatgcgcgaactcggcttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

187

Amino Acids

21.4

Weight (kDa)

10.68

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	310
AccII	CGCG	2 cut(s)	69, 547
AciI	CCGC	2 cut(s)	175, 302
AclWI	GGATC	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	3 cut(s)	94, 157, 312
AfiI	CCNNNNNNNGG	2 cut(s)	79, 145
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	2 cut(s)	293, 401
AluI	AGCT	2 cut(s)	293, 401
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	529
Asp718I	GGTACC	1 cut(s)	310
AspLEI	GCGC	3 cut(s)	144, 356, 547
AsuC2I	CCSGG	2 cut(s)	75, 278
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	3 cut(s)	200, 227, 258
BcgI	CGANNNNNNTGC	2 cut(s)	508, 542
BciT130I	CCWGG	1 cut(s)	454
BciVI	GTATCC	1 cut(s)	451
BcnI	CCSGG	2 cut(s)	75, 278
BfaI	CTAG	2 cut(s)	425, 447
BfuI	GTATCC	1 cut(s)	451
BisI	GCNGC	1 cut(s)	530
BlsI	GCNGC	1 cut(s)	531
Bme1390I	CCNGG	3 cut(s)	75, 278, 454
BmeT110I	CYCGRG	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	3 cut(s)	75, 278, 454
BpiI	GAAGAC	1 cut(s)	519
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpuMI	CCSGG	2 cut(s)	75, 278
Bsa29I	ATCGAT	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	73, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 145
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	73, 453
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	79, 145
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	516
Bsh1236I	CGCG	2 cut(s)	69, 547
BshFI	GGCC	1 cut(s)	383
BshNI	GGYRCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	75, 139, 278
BslFI	GGGAC	4 cut(s)	56, 226, 319, 350
BslI	CCNNNNNNNGG	2 cut(s)	79, 145
BsmFI	GGGAC	4 cut(s)	56, 226, 319, 350
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	225, 259
BspACI	CCGC	2 cut(s)	175, 302
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	405
BspDI	ATCGAT	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	69, 547
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	73, 453
BssMI	GATC	2 cut(s)	225, 259
BssSI	CACGAG	1 cut(s)	517
Bst2BI	CACGAG	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	67, 106
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	2 cut(s)	69, 547
BstHHI	GCGC	3 cut(s)	144, 356, 547
BstKTI	GATC	2 cut(s)	228, 262
BstMBI	GATC	2 cut(s)	225, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 553
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	3 cut(s)	73, 276, 452
BstUI	CGCG	2 cut(s)	69, 547
BstV1I	GCAGC	1 cut(s)	516
BstV2I	GAAGAC	1 cut(s)	519
Bsu15I	ATCGAT	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	383
BsuTUI	ATCGAT	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	67, 106
CfoI	GCGC	3 cut(s)	144, 356, 547
ClaI	ATCGAT	1 cut(s)	262
CseI	GACGC	2 cut(s)	58, 336
Csp6I	GTAC	3 cut(s)	93, 156, 311
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	4 cut(s)	109, 357, 395, 542
CviJI	RGCY	6 cut(s)	104, 293, 383, 401, 502, 556
CviKI_1	RGCY	6 cut(s)	104, 293, 383, 401, 502, 556
CviQI	GTAC	3 cut(s)	93, 156, 311
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	2 cut(s)	227, 261
DpnII	GATC	2 cut(s)	225, 259
DraI	TTTAAA	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco147I	AGGCCT	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	452
FaeI	CATG	4 cut(s)	112, 360, 398, 545
FaqI	GGGAC	4 cut(s)	56, 226, 319, 350
FatI	CATG	4 cut(s)	108, 356, 394, 541
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	530
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	530
FspBI	CTAG	2 cut(s)	425, 447
GlaI	GCGC	3 cut(s)	143, 355, 546
GluI	GCNGC	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	3 cut(s)	75, 139, 278
HgaI	GACGC	2 cut(s)	58, 336
HhaI	GCGC	3 cut(s)	144, 356, 547
Hin1II	CATG	4 cut(s)	112, 360, 398, 545
Hin6I	GCGC	3 cut(s)	142, 354, 545
HinP1I	GCGC	3 cut(s)	142, 354, 545
HinfI	GANTC	5 cut(s)	46, 243, 268, 298, 332
HpaII	CCGG	3 cut(s)	75, 139, 278
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	93, 158
Hpy188I	TCNGA	1 cut(s)	259
Hpy8I	GTNNAC	2 cut(s)	93, 158
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	94, 231
HpyCH4V	TGCA	2 cut(s)	65, 108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 553
HpyF3I	CTNAG	1 cut(s)	413
Hsp92II	CATG	4 cut(s)	112, 360, 398, 545
HspAI	GCGC	3 cut(s)	142, 354, 545
KpnI	GGTACC	1 cut(s)	314
Kzo9I	GATC	2 cut(s)	225, 259
LpnPI	CCDG	8 cut(s)	88, 152, 157, 291, 293, 439, 466, 516
Lsp1109I	GCAGC	1 cut(s)	516
MaeI	CTAG	2 cut(s)	425, 447
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	2 cut(s)	227, 261
MboI	GATC	2 cut(s)	225, 259
MboII	GAAGA	2 cut(s)	331, 524
MfeI	CAATTG	1 cut(s)	495
MluCI	AATT	3 cut(s)	481, 495, 535
MluI	ACGCGT	1 cut(s)	67
MlyI	GAGTC	3 cut(s)	252, 307, 341
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	6 cut(s)	47, 172, 203, 216, 347, 453
MseI	TTAA	3 cut(s)	84, 288, 375
MspI	CCGG	3 cut(s)	75, 139, 278
MspR9I	CCNGG	3 cut(s)	75, 278, 454
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	2 cut(s)	69, 547
MwoI	GCNNNNNNNGC	2 cut(s)	353, 553
NciI	CCSGG	2 cut(s)	75, 278
NdeII	GATC	2 cut(s)	225, 259
NlaIII	CATG	4 cut(s)	112, 360, 398, 545
NlaIV	GGNNCC	1 cut(s)	312
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	46, 268
PkrI	GCNGC	1 cut(s)	531
PleI	GAGTC	3 cut(s)	251, 306, 340
PpsI	GAGTC	3 cut(s)	251, 306, 340
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	126
RsaI	GTAC	3 cut(s)	94, 157, 312
RsaNI	GTAC	3 cut(s)	93, 156, 311
SaqAI	TTAA	3 cut(s)	84, 288, 375
SatI	GCNGC	1 cut(s)	530
Sau3AI	GATC	2 cut(s)	225, 259
SchI	GAGTC	3 cut(s)	252, 307, 341
ScrFI	CCNGG	3 cut(s)	75, 278, 454
SetI	ASST	7 cut(s)	39, 150, 221, 295, 312, 330, 403
Sfr274I	CTCGAG	1 cut(s)	126
SlaI	CTCGAG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	481, 495, 535
SseBI	AGGCCT	1 cut(s)	383
SsiI	CCGC	2 cut(s)	175, 302
SspMI	CTAG	2 cut(s)	425, 447
StuI	AGGCCT	1 cut(s)	383
StyD4I	CCNGG	3 cut(s)	73, 276, 452
TaqI	TCGA	2 cut(s)	127, 262
TasI	AATT	3 cut(s)	481, 495, 535
TatI	WGTACW	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	46, 268
Tru1I	TTAA	3 cut(s)	84, 288, 375
Tru9I	TTAA	3 cut(s)	84, 288, 375
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	2 cut(s)	411, 530
XhoI	CTCGAG	1 cut(s)	126
XspI	CTAG	2 cut(s)	425, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.