Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000342.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

149895 .. 150968

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000342.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgtggggaaaacaggttcttgacagaggaactaggtggcgcattggtaatggtaatcggattagtatcagtgctgatcgttggttaccgtgtcccacaagtttcaaggtggtgtccccgataaatataccagcaaattggacggtggatcaattgttcacggagactggggcgtggaatgttctattgattagatcattatttattgatcatgaggcagagatgatcttaagtatgccaatgggattgcgaacgataccggataagttagtttggcacttaacgaagaatggtgttttcaccatgaaatctggttattgggttgctcgtgatcaacaaacaaagaggcgtgatgagatggcaagttgtagctcttcgaaggtggcgtttatatggaagaaaatttggggacttacgataccgcacaaagttaagctatttctttggagagctgtgcatgggtacctgccttgcgtgtctaaaagtgagtggaagctttcttttctcagtgaagtgtgtaaaatatggggtgagccttcttttctcagtgaagtgtgcaaaacatggggtgagccttcttttattgatctagtttcccatgttaatagtattgctggtagtggtgatatggagtcatttagtttcattatttgttggatctggagaaatcgtaatttgcaccgacatggagagaggagtttgaagctggaagagttggttatagcggcaggggaatggcaaatgcagtttgagtcagttaatgccaagaaggagaagttcgtagtgggcagtgaaggagcagcaagggaggtaagagatgagaatactgaattggccgcatggagacctccaaacccagactgtttgaaactgaattttgacggagctaccgataataagaatggtattagtggaataggcgttgtatttagggatcaacaaggtaagttacagggagctttggcggtgccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

324

Amino Acids

36.85

Weight (kDa)

9.04

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	474
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	2 cut(s)	462, 967
AciI	CCGC	4 cut(s)	422, 725, 837, 965
AclWI	GGATC	3 cut(s)	156, 665, 942
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	2 cut(s)	402, 874
AfaI	GTAC	1 cut(s)	464
AflII	CTTAAG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	106, 703, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AloI	GAACNNNNNNTCC	3 cut(s)	32, 140, 172
AluBI	AGCT	7 cut(s)	372, 436, 452, 496, 706, 887, 959
AluI	AGCT	7 cut(s)	372, 436, 452, 496, 706, 887, 959
Alw26I	GTCTC	2 cut(s)	158, 838
AlwI	GGATC	3 cut(s)	156, 665, 942
AoxI	GGCC	1 cut(s)	834
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	2 cut(s)	402, 874
Asp718I	GGTACC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	42
AsuHPI	GGTGA	4 cut(s)	292, 542, 581, 635
AsuII	TTCGAA	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	972
BanI	GGYRCC	2 cut(s)	462, 967
BauI	CACGAG	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	812
BccI	CCATC	1 cut(s)	352
BclI	TGATCA	2 cut(s)	208, 331
BcoDI	GTCTC	2 cut(s)	158, 838
BfaI	CTAG	2 cut(s)	33, 590
BfrI	CTTAAG	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	3 cut(s)	726, 801, 837
BlsI	GCNGC	3 cut(s)	727, 802, 838
BmiI	GGNNCC	2 cut(s)	464, 969
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	682
Bpu14I	TTCGAA	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	838
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bse1I	ACTGG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	65
BseJI	GATNNNNATC	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	520, 559
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	709
BseSI	GKGCMC	1 cut(s)	972
BseXI	GCAGC	1 cut(s)	812
BshFI	GGCC	1 cut(s)	836
BshNI	GGYRCC	2 cut(s)	462, 967
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	3 cut(s)	78, 100, 423
BsmAI	GTCTC	2 cut(s)	158, 838
BsmFI	GGGAC	3 cut(s)	78, 100, 423
BsnI	GGCC	1 cut(s)	836
Bso31I	GGTCTC	1 cut(s)	838
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	9 cut(s)	76, 148, 194, 208, 225, 331, 586, 657, 934
BspACI	CCGC	4 cut(s)	422, 725, 837, 965
BspANI	GGCC	1 cut(s)	836
BspCNI	CTCAG	2 cut(s)	519, 558
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	464, 969
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	3 cut(s)	156, 665, 942
BspQI	GCTCTTC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	377
BspT107I	GGYRCC	2 cut(s)	462, 967
BspTI	CTTAAG	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	838
BsrI	ACTGG	1 cut(s)	172
BssMI	GATC	9 cut(s)	76, 148, 194, 208, 225, 331, 586, 657, 934
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	90, 145, 863
Bst6I	CTCTTC	2 cut(s)	379, 705
BstAFI	CTTAAG	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	377
BstDEI	CTNAG	2 cut(s)	506, 545
BstEII	GGTNACC	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	9 cut(s)	79, 151, 197, 211, 228, 334, 589, 660, 937
BstMAI	GTCTC	2 cut(s)	158, 838
BstMBI	GATC	9 cut(s)	76, 148, 194, 208, 225, 331, 586, 657, 934
BstPI	GGTNACC	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	972
BstV1I	GCAGC	1 cut(s)	812
BstX2I	RGATCY	1 cut(s)	657
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	657
BsuRI	GGCC	1 cut(s)	836
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	4 cut(s)	76, 514, 553, 796
BveI	ACCTGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	7 cut(s)	212, 304, 458, 564, 599, 686, 840
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	2 cut(s)	506, 545
DpnI	GATC	9 cut(s)	78, 150, 196, 210, 227, 333, 588, 659, 936
DpnII	GATC	9 cut(s)	76, 148, 194, 208, 225, 331, 586, 657, 934
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	2 cut(s)	379, 705
EarI	CTCTTC	2 cut(s)	379, 705
Eco31I	GGTCTC	1 cut(s)	838
Eco91I	GGTNACC	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	84
FaeI	CATG	7 cut(s)	215, 307, 461, 567, 602, 689, 843
FaqI	GGGAC	3 cut(s)	78, 100, 423
FatI	CATG	7 cut(s)	211, 303, 457, 563, 598, 685, 839
FbaI	TGATCA	2 cut(s)	208, 331
Fnu4HI	GCNGC	3 cut(s)	726, 801, 837
Fsp4HI	GCNGC	3 cut(s)	726, 801, 837
FspBI	CTAG	2 cut(s)	33, 590
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	3 cut(s)	726, 801, 837
GsuI	CTGGAG	1 cut(s)	682
HaeIII	GGCC	1 cut(s)	836
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	7 cut(s)	215, 307, 461, 567, 602, 689, 843
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	632, 752
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	4 cut(s)	292, 542, 581, 635
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	4 cut(s)	20, 212, 329, 661
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	5 cut(s)	373, 546, 585, 763, 788
HpyCH4III	ACNGT	3 cut(s)	90, 145, 863
HpyCH4V	TGCA	4 cut(s)	457, 558, 679, 745
HpyF3I	CTNAG	2 cut(s)	506, 545
Hsp92II	CATG	7 cut(s)	215, 307, 461, 567, 602, 689, 843
HspAI	GCGC	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	466
Ksp22I	TGATCA	2 cut(s)	208, 331
Kzo9I	GATC	9 cut(s)	76, 148, 194, 208, 225, 331, 586, 657, 934
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	3 cut(s)	797, 884, 956
Lsp1109I	GCAGC	1 cut(s)	812
MaeI	CTAG	2 cut(s)	33, 590
MaeIII	GTNAC	2 cut(s)	84, 948
MalI	GATC	9 cut(s)	78, 150, 196, 210, 227, 333, 588, 659, 936
MboI	GATC	9 cut(s)	76, 148, 194, 208, 225, 331, 586, 657, 934
MboII	GAAGA	4 cut(s)	298, 366, 409, 722
MfeI	CAATTG	1 cut(s)	152
MflI	RGATCY	1 cut(s)	657
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	6 cut(s)	136, 152, 402, 673, 830, 874
MlyI	GAGTC	2 cut(s)	641, 761
MmeI	TCCRAC	1 cut(s)	635
MnlI	CCTC	6 cut(s)	20, 208, 339, 687, 802, 858
MseI	TTAA	5 cut(s)	230, 281, 432, 603, 759
MslI	CAYNNNNRTG	1 cut(s)	684
MspCI	CTTAAG	1 cut(s)	229
MspI	CCGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	152
NdeII	GATC	9 cut(s)	76, 148, 194, 208, 225, 331, 586, 657, 934
NlaIII	CATG	7 cut(s)	215, 307, 461, 567, 602, 689, 843
NlaIV	GGNNCC	2 cut(s)	464, 969
NspV	TTCGAA	1 cut(s)	377
PagI	TCATGA	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	2 cut(s)	383, 888
PkrI	GCNGC	3 cut(s)	727, 802, 838
PleI	GAGTC	2 cut(s)	640, 760
PpsI	GAGTC	2 cut(s)	640, 760
PspEI	GGTNACC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	464, 969
PsuI	RGATCY	1 cut(s)	657
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	5 cut(s)	230, 281, 432, 603, 759
SatI	GCNGC	3 cut(s)	726, 801, 837
Sau3AI	GATC	9 cut(s)	76, 148, 194, 208, 225, 331, 586, 657, 934
SchI	GAGTC	2 cut(s)	641, 761
SduI	GDGCHC	1 cut(s)	972
SfuI	TTCGAA	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	6 cut(s)	136, 152, 402, 673, 830, 874
SsiI	CCGC	4 cut(s)	422, 725, 837, 965
SspMI	CTAG	2 cut(s)	33, 590
TaaI	ACNGT	3 cut(s)	90, 145, 863
TaqI	TCGA	1 cut(s)	377
TasI	AATT	6 cut(s)	136, 152, 402, 673, 830, 874
TauI	GCSGC	2 cut(s)	728, 839
Tru1I	TTAA	5 cut(s)	230, 281, 432, 603, 759
Tru9I	TTAA	5 cut(s)	230, 281, 432, 603, 759
TscAI	CASTG	4 cut(s)	76, 514, 553, 796
TseI	GCWGC	1 cut(s)	800
TspDTI	ATGAA	2 cut(s)	320, 634
TspGWI	ACGGA	2 cut(s)	176, 897
TspRI	CASTG	4 cut(s)	76, 514, 553, 796
Vha464I	CTTAAG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	402, 874
XspI	CTAG	2 cut(s)	33, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.