Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

42096238 .. 42096930

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGTTACTGAAAGTGAAGATATGGAAGGTATCTGGGAGAGACTGTAGGAGGGAGGATGGAGGCTTGGGATTCTACCTACGAGCTTTTAATCAGGCTATGCTTGCGAAGACGGTTTGGAGAATTTTCTGGGGAAAACATTCTTTGGTTATTGATGGTGGCACTATATGGCGGATTGGTAATGGGAAAAGAGTCATTATTAAAGGTGATAGGTGGATGCCGTGTTTACGGACTCAGGAGCCTTTGGTTAGGTCCTTATTTCTTTCACACGAAGCGGAGATGATTCTTAGCATGCCAATGGGGTTGCACAGAGTCCCGGCCAAGCTGGTCTGGCATTTCACAAAGAATGGAACATTTACAGTCAAGTCAGGCTACTGGGTGGTGAACTGCAAGCAAGGAAATGCCCCACTATGGCCAGCTCTAGTTCTACTGCTTCGGAACTTTGGAAGAAAATATGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

154

Amino Acids

17.78

Weight (kDa)

10.54

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	172, 275
AcoI	YGGCCR	2 cut(s)	318, 413
AcsI	RAATTY	2 cut(s)	123, 459
AfiI	CCNNNNNNNGG	1 cut(s)	411
AluBI	AGCT	3 cut(s)	86, 325, 419
AluI	AGCT	3 cut(s)	86, 325, 419
Alw26I	GTCTC	1 cut(s)	36
AoxI	GGCC	2 cut(s)	318, 413
ApoI	RAATTY	2 cut(s)	123, 459
Asp700I	GAANNNNTTC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	218, 394
AvaII	GGWCC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	116
BccI	CCATC	2 cut(s)	53, 149
BceAI	ACGGC	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	1 cut(s)	380
BseGI	GGATG	2 cut(s)	64, 222
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	320, 415
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	320, 415
BspACI	CCGC	2 cut(s)	172, 275
BspANI	GGCC	2 cut(s)	320, 415
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	380
Bst4CI	ACNGT	3 cut(s)	47, 115, 361
BstC8I	GCNNGC	4 cut(s)	105, 293, 392, 417
BstDEI	CTNAG	2 cut(s)	234, 287
BstF5I	GGATG	2 cut(s)	64, 222
BstMAI	GTCTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 331
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	320, 415
BtsCI	GGATG	2 cut(s)	64, 222
Cac8I	GCNNGC	4 cut(s)	105, 293, 392, 417
Cfr13I	GGNCC	1 cut(s)	252
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	9 cut(s)	66, 86, 98, 241, 320, 325, 372, 415, 419
CviKI_1	RGCY	9 cut(s)	66, 86, 98, 241, 320, 325, 372, 415, 419
DdeI	CTNAG	2 cut(s)	234, 287
EaeI	YGGCCR	2 cut(s)	318, 413
EciI	GGCGGA	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	252
FaeI	CATG	1 cut(s)	295
FaiI	YATR	7 cut(s)	25, 101, 167, 169, 293, 412, 456
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	1 cut(s)	291
FokI	GGATG	2 cut(s)	71, 229
FspBI	CTAG	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	320, 415
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	1 cut(s)	295
HinfI	GANTC	5 cut(s)	72, 192, 232, 283, 312
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	2 cut(s)	218, 394
Hpy166II	GTNNAC	2 cut(s)	227, 385
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	227, 385
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	3 cut(s)	47, 115, 361
HpyCH4V	TGCA	2 cut(s)	307, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 331
HpyF3I	CTNAG	2 cut(s)	234, 287
Hsp92II	CATG	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	238
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	31, 121, 459
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	2 cut(s)	123, 459
MluNI	TGGCCA	1 cut(s)	415
MlyI	GAGTC	3 cut(s)	201, 226, 321
MnlI	CCTC	3 cut(s)	45, 49, 56
Mox20I	TGGCCA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	415
MseI	TTAA	2 cut(s)	90, 201
MslI	CAYNNNNRTG	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	415
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	104, 331
NciI	CCSGG	1 cut(s)	317
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	295
PaeI	GCATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	72, 283
PleI	GAGTC	3 cut(s)	200, 226, 320
PpsI	GAGTC	3 cut(s)	200, 226, 320
PpuMI	RGGWCCY	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	252
PspPPI	RGGWCCY	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	90, 201
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	3 cut(s)	201, 226, 321
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	8 cut(s)	33, 81, 88, 208, 215, 254, 327, 421
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	295
Sse9I	AATT	2 cut(s)	123, 459
SsiI	CCGC	2 cut(s)	172, 275
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	47, 115, 361
TasI	AATT	2 cut(s)	123, 459
TfiI	GAWTC	2 cut(s)	72, 283
Tru1I	TTAA	2 cut(s)	90, 201
Tru9I	TTAA	2 cut(s)	90, 201
TspGWI	ACGGA	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	2 cut(s)	123, 459
XceI	RCATGY	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.