Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8418073.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

723 .. 1313

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8418073.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgtggggaaagcaggtgattgatagggggacaaggtggaggatcggtgatggaagaagagtaagcataagggctgatcgttggctaccttgcccggtaaatttcaaagttataagtccagtacgtatgttggagcatcaaaatgtggaatctttgtttaccgcttccggtgcttggaatgttcctttaatcaaaggaatgtttttatctcatgaagctaacatgatcctaagcatgcccttggggttgggaagtacaccagataaactcgtttggcattataccaaaaatggtgtctattgtgttaagtcaggttattgggttgcaaaagatatgcatgttcaaaaaggagtttctgtagcaggtggtagtgtcaatagaagtaaggaggtttggggaagaatatggagtattaatgcacctcataaggtccacgtctttatgtggagagcaattcaggaatttctgccatgtgcaacaaatctaaaacagaggaagattttagacgatcaatgctgttggcaatgtggagatcccagggagtctatgttgcatgtcttatggaattgttggaatgcaaagaaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

196

Amino Acids

22.54

Weight (kDa)

9.74

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	113
AarI	CACCTGC	2 cut(s)	4, 353
Acc36I	ACCTGC	2 cut(s)	4, 353
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	3 cut(s)	50, 220, 527
AcsI	RAATTY	2 cut(s)	100, 461
AfaI	GTAC	2 cut(s)	123, 256
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	106, 344
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
AlwI	GGATC	3 cut(s)	50, 220, 527
ApoI	RAATTY	2 cut(s)	100, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AseI	ATTAAT	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	430
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	28, 59
AvaII	GGWCC	1 cut(s)	430
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	2 cut(s)	4, 353
Bme1390I	CCNGG	2 cut(s)	95, 538
Bme18I	GGWCC	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	95, 538
BmsI	GCATC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	240, 536, 537
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 61, 342, 372, 533, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	3 cut(s)	240, 536, 537
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	95, 168
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	580
Bsp143I	GATC	5 cut(s)	42, 76, 225, 508, 532
BspACI	CCGC	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	211
BspMI	ACCTGC	2 cut(s)	4, 353
BspPI	GGATC	3 cut(s)	50, 220, 527
BsrDI	GCAATG	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	240, 536, 537
BssMI	GATC	5 cut(s)	42, 76, 225, 508, 532
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	52
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	230
BstKTI	GATC	5 cut(s)	45, 79, 228, 511, 535
BstMBI	GATC	5 cut(s)	42, 76, 225, 508, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	538
BstNSI	RCATGY	3 cut(s)	238, 341, 557
BstSCI	CCNGG	2 cut(s)	93, 536
BstSFI	CTRYAG	1 cut(s)	357
BstSNI	TACGTA	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BtrI	CACGTC	1 cut(s)	436
BveI	ACCTGC	2 cut(s)	4, 353
Cac8I	GCNNGC	1 cut(s)	236
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	122, 255
CviAII	CATG	6 cut(s)	212, 223, 235, 338, 471, 554
CviJI	RGCY	3 cut(s)	74, 85, 218
CviKI_1	RGCY	3 cut(s)	74, 85, 218
CviQI	GTAC	2 cut(s)	122, 255
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	5 cut(s)	44, 78, 227, 510, 534
DpnII	GATC	5 cut(s)	42, 76, 225, 508, 532
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	6 cut(s)	215, 226, 238, 341, 474, 557
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	6 cut(s)	211, 222, 234, 337, 470, 553
HapII	CCGG	2 cut(s)	95, 168
Hin1II	CATG	6 cut(s)	215, 226, 238, 341, 474, 557
HinfI	GANTC	2 cut(s)	149, 542
HpaII	CCGG	2 cut(s)	95, 168
HphI	GGTGA	2 cut(s)	28, 59
Hpy166II	GTNNAC	3 cut(s)	159, 257, 433
Hpy188III	TCNNGA	2 cut(s)	212, 458
Hpy8I	GTNNAC	3 cut(s)	159, 257, 433
HpyCH4IV	ACGT	2 cut(s)	124, 435
HpyCH4V	TGCA	6 cut(s)	326, 337, 419, 476, 553, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	124, 435
Hsp92II	CATG	6 cut(s)	215, 226, 238, 341, 474, 557
Kzo9I	GATC	5 cut(s)	42, 76, 225, 508, 532
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	9 cut(s)	108, 132, 181, 273, 297, 348, 443, 523, 550
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	2 cut(s)	124, 435
MalI	GATC	5 cut(s)	44, 78, 227, 510, 534
MboI	GATC	5 cut(s)	42, 76, 225, 508, 532
MboII	GAAGA	4 cut(s)	66, 69, 411, 508
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	4 cut(s)	100, 453, 461, 565
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	2 cut(s)	111, 551
MnlI	CCTC	4 cut(s)	33, 382, 432, 486
Mph1103I	ATGCAT	1 cut(s)	339
MseI	TTAA	3 cut(s)	188, 306, 414
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	2 cut(s)	95, 168
MspR9I	CCNGG	2 cut(s)	95, 538
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	5 cut(s)	42, 76, 225, 508, 532
NlaIII	CATG	6 cut(s)	215, 226, 238, 341, 474, 557
NsiI	ATGCAT	1 cut(s)	339
NspI	RCATGY	3 cut(s)	238, 341, 557
PaeI	GCATGC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	211
PaqCI	CACCTGC	2 cut(s)	4, 353
PasI	CCCWGGG	1 cut(s)	537
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Ppu21I	YACGTR	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
PspPI	GGNCC	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	2 cut(s)	123, 256
RsaNI	GTAC	2 cut(s)	122, 255
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	188, 306, 414
Sau3AI	GATC	5 cut(s)	42, 76, 225, 508, 532
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	95, 538
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	141
SnaBI	TACGTA	1 cut(s)	125
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	4 cut(s)	100, 453, 461, 565
SsiI	CCGC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	93, 536
StyI	CCWWGG	1 cut(s)	240
TaiI	ACGT	2 cut(s)	127, 438
TasI	AATT	4 cut(s)	100, 453, 461, 565
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	3 cut(s)	188, 306, 414
Tru9I	TTAA	3 cut(s)	188, 306, 414
TspDTI	ATGAA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	2 cut(s)	100, 461
XceI	RCATGY	3 cut(s)	238, 341, 557
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.