Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8492163.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

844 .. 2225

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8492163.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgagtgtgttctggatgcctgtaactttgagttatgaattatcaagtttatcagccaggttttggtgggggaggcagaaaggtaaacgtggtcttaattggctgcggtgggattctttatgcataaacaagttgaaaggtgggctaggatttcgagattttgttgatttcaatcaagcactcttggccaaacaatgttggagattattctctcttcctgatctgttggttacgaaggtgtataaagggctctactattcttcttcctctcttctaaatgcactggttgggagatcaagctcactgatatggaggtccctccattggggtagggaactattagcttctggtttgcgacagagggtgggtgatggtatgtcaattttcatttttcgtgatgcttggattcctattccatacacatttcgcatttactccccaccaaatttgcttttcaattctcttgtttctgagttgattactgtggatggttattggaacattgagttattacatcatagcttttggccaagagaggttgaagcaattttctccattcctctgccgatagctcctactccagatagattgtgttggcattacacaaaaaatggaatatatacagtcaagagtggttatcaattggcacaaaactgcaaacttcaaaatgaggggggtgaaggcagttctaacccacaaaaagacccggtttggaagtatgtgtggaatctgaaagctccagctactgcaaaggtctttttttggcatgcaatctatgacatcttgccttgtgcctttaatttacatcgacgacatctattatcttctctggtatgttcctgctgcaaaataggctatgaaactattgtacatgccttatggtcctgctctaaagccaaagaagtttggctgctcacttcttttcgtactgccgtgggagggtggaaacatggctctttgaaagacctattcagatttggtaattctgacatatgggtaccatcagacttccctttcctcaaattaaatgtaaatgttgctttggatgatgtacatagtgttagaggtatgggagcaatctcacgcaatgaaataggtgatcttctgatagcggcttctaaaggatttagtggaagatttggtgttaaggcaacggagatttatgcggctgcgttgggtttgcaggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

396

Amino Acids

45.04

Weight (kDa)

9.47

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1174
Acc36I	ACCTGC	1 cut(s)	1174
Acc65I	GGTACC	1 cut(s)	997
AccB1I	GGYRCC	1 cut(s)	997
AccB7I	CCANNNNNTGG	1 cut(s)	63
AciI	CCGC	3 cut(s)	106, 1112, 1166
AcoI	YGGCCR	2 cut(s)	186, 527
AcsI	RAATTY	1 cut(s)	445
AfaI	GTAC	4 cut(s)	870, 928, 999, 1053
AfiI	CCNNNNNNNGG	4 cut(s)	63, 324, 325, 939
AgsI	TTSAA	6 cut(s)	136, 172, 457, 542, 665, 961
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	6 cut(s)	300, 344, 522, 572, 737, 743
AluI	AGCT	6 cut(s)	300, 344, 522, 572, 737, 743
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	2 cut(s)	186, 527
ApeKI	GCWGC	4 cut(s)	103, 843, 910, 1169
ApoI	RAATTY	1 cut(s)	445
Asp718I	GGTACC	1 cut(s)	997
AspS9I	GGNCC	2 cut(s)	315, 882
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	3 cut(s)	380, 689, 1109
AvaII	GGWCC	2 cut(s)	315, 882
BalI	TGGCCA	2 cut(s)	188, 529
BanI	GGYRCC	1 cut(s)	997
BanII	GRGCYC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	90, 830, 897, 1156
BccI	CCATC	3 cut(s)	365, 482, 1009
BceAI	ACGGC	1 cut(s)	917
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	707
BfaI	CTAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	1174
BisI	GCNGC	6 cut(s)	104, 844, 911, 1113, 1167, 1170
BlsI	GCNGC	6 cut(s)	105, 845, 912, 1114, 1168, 1171
Bme1390I	CCNGG	2 cut(s)	58, 707
Bme18I	GGWCC	2 cut(s)	315, 882
BmgT120I	GGNCC	2 cut(s)	315, 882
BmiI	GGNNCC	2 cut(s)	317, 999
BmrFI	CCNGG	2 cut(s)	58, 707
BmsI	GCATC	2 cut(s)	6, 388
BpmI	CTGGAG	2 cut(s)	564, 723
BpuMI	CCSGG	1 cut(s)	707
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	933
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 324, 325, 939
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	1093
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	933
BseGI	GGATG	3 cut(s)	21, 493, 1051
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	4 cut(s)	63, 324, 325, 939
BseMI	GCAATG	1 cut(s)	1093
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	4 cut(s)	90, 830, 897, 1156
BshFI	GGCC	2 cut(s)	188, 529
BshNI	GGYRCC	1 cut(s)	997
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	4 cut(s)	63, 324, 325, 939
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	188, 529
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	2 cut(s)	868, 1051
Bsp143I	GATC	3 cut(s)	220, 293, 1099
BspACI	CCGC	3 cut(s)	106, 1112, 1166
BspANI	GGCC	2 cut(s)	188, 529
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	317, 999
BspMI	ACCTGC	1 cut(s)	1174
BspT107I	GGYRCC	1 cut(s)	997
BsrDI	GCAATG	1 cut(s)	1093
BsrGI	TGTACA	2 cut(s)	868, 1051
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	933
BssMI	GATC	3 cut(s)	220, 293, 1099
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	484, 625
Bst6I	CTCTTC	2 cut(s)	219, 276
BstAUI	TGTACA	2 cut(s)	868, 1051
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	933
BstF5I	GGATG	3 cut(s)	21, 493, 1051
BstKTI	GATC	3 cut(s)	223, 296, 1102
BstMBI	GATC	3 cut(s)	220, 293, 1099
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 852
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	2 cut(s)	770, 875
BstSCI	CCNGG	2 cut(s)	56, 705
BstV1I	GCAGC	4 cut(s)	90, 830, 897, 1156
BsuRI	GGCC	2 cut(s)	188, 529
BtgI	CCRYGG	1 cut(s)	933
BtsCI	GGATG	3 cut(s)	21, 493, 1051
BtsIMutI	CAGTG	2 cut(s)	281, 302
BveI	ACCTGC	1 cut(s)	1174
Cac8I	GCNNGC	1 cut(s)	768
CaiI	CAGNNNCTG	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	315, 882
Csp6I	GTAC	4 cut(s)	869, 927, 998, 1052
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	3 cut(s)	767, 872, 950
CviQI	GTAC	4 cut(s)	869, 927, 998, 1052
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	3 cut(s)	222, 295, 1101
DpnII	GATC	3 cut(s)	220, 293, 1099
EaeI	YGGCCR	2 cut(s)	186, 527
Eam1104I	CTCTTC	2 cut(s)	219, 276
EarI	CTCTTC	2 cut(s)	219, 276
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	315, 882
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	3 cut(s)	770, 875, 953
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	766, 871, 949
FauNDI	CATATG	1 cut(s)	992
Fnu4HI	GCNGC	6 cut(s)	104, 844, 911, 1113, 1167, 1170
FokI	GGATG	3 cut(s)	28, 500, 1058
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	6 cut(s)	104, 844, 911, 1113, 1167, 1170
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	6 cut(s)	104, 844, 911, 1113, 1167, 1170
GsuI	CTGGAG	2 cut(s)	564, 723
HaeIII	GGCC	2 cut(s)	188, 529
HapII	CCGG	1 cut(s)	707
Hin1II	CATG	3 cut(s)	770, 875, 953
HinfI	GANTC	3 cut(s)	113, 406, 727
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	3 cut(s)	380, 689, 1109
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	6 cut(s)	472, 732, 974, 988, 1006, 1107
Hpy188III	TCNNGA	6 cut(s)	13, 155, 218, 395, 581, 628
Hpy8I	GTNNAC	1 cut(s)	86
Hpy99I	CGWCG	1 cut(s)	813
HpyAV	CCTTC	2 cut(s)	229, 674
HpyCH4III	ACNGT	2 cut(s)	484, 625
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	7 cut(s)	123, 281, 657, 749, 770, 846, 1183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 852
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	770, 875, 953
KpnI	GGTACC	1 cut(s)	1001
Kzo9I	GATC	3 cut(s)	220, 293, 1099
LmnI	GCTCC	3 cut(s)	577, 742, 1073
Lsp1109I	GCAGC	4 cut(s)	90, 830, 897, 1156
LweI	GCATC	2 cut(s)	6, 388
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	22, 229
MalI	GATC	3 cut(s)	222, 295, 1101
MboI	GATC	3 cut(s)	220, 293, 1099
MboII	GAAGA	7 cut(s)	206, 252, 255, 263, 816, 1094, 1146
MfeI	CAATTG	1 cut(s)	641
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	2 cut(s)	188, 529
MluNI	TGGCCA	2 cut(s)	188, 529
MmeI	TCCRAC	1 cut(s)	179
Mox20I	TGGCCA	2 cut(s)	188, 529
Mph1103I	ATGCAT	1 cut(s)	125
MscI	TGGCCA	2 cut(s)	188, 529
MseI	TTAA	4 cut(s)	96, 798, 1025, 1146
MslI	CAYNNNNRTG	1 cut(s)	307
Msp20I	TGGCCA	2 cut(s)	188, 529
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	2 cut(s)	58, 707
MunI	CAATTG	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	185, 852
NciI	CCSGG	1 cut(s)	707
NdeI	CATATG	1 cut(s)	992
NdeII	GATC	3 cut(s)	220, 293, 1099
NlaIII	CATG	3 cut(s)	770, 875, 953
NlaIV	GGNNCC	2 cut(s)	317, 999
NsiI	ATGCAT	1 cut(s)	125
NspI	RCATGY	2 cut(s)	770, 875
PaeI	GCATGC	1 cut(s)	770
PaqCI	CACCTGC	1 cut(s)	1174
PfeI	GAWTC	3 cut(s)	113, 406, 727
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	6 cut(s)	105, 845, 912, 1114, 1168, 1171
PpuMI	RGGWCCY	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	317, 999
PspPI	GGNCC	2 cut(s)	315, 882
PspPPI	RGGWCCY	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	746
RsaI	GTAC	4 cut(s)	870, 928, 999, 1053
RsaNI	GTAC	4 cut(s)	869, 927, 998, 1052
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	4 cut(s)	96, 798, 1025, 1146
SatI	GCNGC	6 cut(s)	104, 844, 911, 1113, 1167, 1170
Sau3AI	GATC	3 cut(s)	220, 293, 1099
Sau96I	GGNCC	2 cut(s)	315, 882
ScrFI	CCNGG	2 cut(s)	58, 707
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	6, 388
SinI	GGWCC	2 cut(s)	315, 882
SmiMI	CAYNNNNRTG	1 cut(s)	307
SphI	GCATGC	1 cut(s)	770
SsiI	CCGC	3 cut(s)	106, 1112, 1166
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	56, 705
TaaI	ACNGT	2 cut(s)	484, 625
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	154, 808
TatI	WGTACW	2 cut(s)	868, 1051
TauI	GCSGC	2 cut(s)	1115, 1169
TfiI	GAWTC	3 cut(s)	113, 406, 727
Tru1I	TTAA	4 cut(s)	96, 798, 1025, 1146
Tru9I	TTAA	4 cut(s)	96, 798, 1025, 1146
TscAI	CASTG	2 cut(s)	288, 309
TseI	GCWGC	4 cut(s)	103, 843, 910, 1169
TspDTI	ATGAA	4 cut(s)	51, 376, 873, 1104
TspGWI	ACGGA	1 cut(s)	1169
TspRI	CASTG	2 cut(s)	288, 309
Van91I	CCANNNNNTGG	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	315, 882
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	2 cut(s)	770, 875
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.