Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

21914900 .. 21916423

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17922.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTGGAACGTCCCCTTAGTACAATTGTTGTTTCTTCCTCATGAAGTTGCAACCATTTTATTTATTCCTTTGGATGGTCCTAGATATTCGGATACCATTGTTTGGCATTATGGGAAGGATGGAAAATACATTGTAAAATCAGGAGCATGGCTTGCAATGGAATTGAAGAATAAAGAAGCCGACAGTCCAGGTAGTAACGGTAATGATGGAACAAATGTGATAGTTTGGAACAAAGTCTGGAGATTGAATGTTGCTTCAAAGATTAAGATTTTTCTATGGAGAGCTCTTTATAAATTCCTAGCCTTGCATGCCAAGAAGACATGGAAGCAGAGTTTCTTAGGTTTTGGGTATAACAGTTGGAAAGAATCAAGTTTCATCAATTTGTTTGAACGAATTGCGAAAGTGGCTGCACACGGAGAACTAGAACTGTTTGGGGTTATCTCTTGGTTATTGTGTAAGAATCGAAATGCTTGCCGGTATGGGGAAAGATTGGTGGAAGGGGAGCAAATTGTTGTTCAAGCGAAGGAATGGTTATCTAATTTTCAGCATGCCCAATTAAGGTTAGTAAACAACATTTCAACCCGGAATGGGAATGACTTCGAAACGGATGATTCCCATTCACCCAAAGTAAACGCGCCCCCAAGAGTTAGTCCCGATAAGAAGATTGAAGTAGAATTTGATGCAGCTAATGTAATTGAAGCCTTGAATATCCCAGATGTTGATTTGAGTATGGAAGGTCCAGTGTTTGATGAAATTTTTGAAGAGAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

258

Amino Acids

29.42

Weight (kDa)

6.33

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccII	CGCG	1 cut(s)	635
AcsI	RAATTY	4 cut(s)	293, 674, 753, 768
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	5 cut(s)	74, 102, 481, 558, 588
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	284, 686
AluI	AGCT	2 cut(s)	284, 686
Alw21I	GWGCWC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	407, 683
ApoI	RAATTY	4 cut(s)	293, 674, 753, 768
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	2 cut(s)	77, 737
AsuC2I	CCSGG	1 cut(s)	583
AsuHPI	GGTGA	1 cut(s)	612
AsuII	TTCGAA	1 cut(s)	600
AvaII	GGWCC	2 cut(s)	77, 737
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	394, 695
BccI	CCATC	3 cut(s)	68, 113, 200
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	583
BfaI	CTAG	3 cut(s)	81, 299, 422
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	408, 684
BlsI	GCNGC	2 cut(s)	409, 685
Bme1390I	CCNGG	2 cut(s)	189, 583
Bme18I	GGWCC	2 cut(s)	77, 737
BmgT120I	GGNCC	2 cut(s)	77, 737
BmrFI	CCNGG	2 cut(s)	189, 583
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	600
BpuMI	CCSGG	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 102, 481, 558, 588
Bse118I	RCCGGY	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	740
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	79, 124, 613
BseLI	CCNNNNNNNGG	5 cut(s)	74, 102, 481, 558, 588
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	740
BseXI	GCAGC	2 cut(s)	394, 695
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	635
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	475, 583
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	5 cut(s)	74, 102, 481, 558, 588
BsmFI	GGGAC	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	635
BspHI	TCATGA	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	740
BssAI	RCCGGY	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	4 cut(s)	185, 200, 356, 429
Bst6I	CTCTTC	1 cut(s)	756
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	4 cut(s)	153, 309, 472, 549
BstDEI	CTNAG	2 cut(s)	16, 337
BstF5I	GGATG	3 cut(s)	79, 124, 613
BstFNI	CGCG	1 cut(s)	635
BstHHI	GCGC	1 cut(s)	637
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 308, 404
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	2 cut(s)	311, 551
BstSCI	CCNGG	2 cut(s)	187, 581
BstUI	CGCG	1 cut(s)	635
BstV1I	GCAGC	2 cut(s)	394, 695
BstV2I	GAAGAC	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	79, 124, 613
BtsIMutI	CAGTG	1 cut(s)	747
Cac8I	GCNNGC	4 cut(s)	153, 309, 472, 549
CciI	TCATGA	1 cut(s)	40
CfoI	GCGC	1 cut(s)	637
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	77, 737
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	5 cut(s)	41, 147, 308, 321, 548
CviJI	RGCY	7 cut(s)	151, 179, 284, 302, 407, 686, 701
CviKI_1	RGCY	7 cut(s)	151, 179, 284, 302, 407, 686, 701
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	16, 337
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Ecl136II	GAGCTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	77, 737
Eco53kI	GAGCTC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	5 cut(s)	44, 150, 311, 324, 551
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	5 cut(s)	40, 146, 307, 320, 547
Fnu4HI	GCNGC	2 cut(s)	408, 684
FokI	GGATG	3 cut(s)	86, 131, 620
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	408, 684
FspBI	CTAG	3 cut(s)	81, 299, 422
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	2 cut(s)	408, 684
GsuI	CTGGAG	1 cut(s)	259
HapII	CCGG	2 cut(s)	475, 583
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	5 cut(s)	44, 150, 311, 324, 551
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HinfI	GANTC	3 cut(s)	365, 460, 611
HpaII	CCGG	2 cut(s)	475, 583
HphI	GGTGA	1 cut(s)	612
Hpy166II	GTNNAC	2 cut(s)	568, 631
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	4 cut(s)	41, 141, 238, 653
Hpy8I	GTNNAC	2 cut(s)	568, 631
HpyAV	CCTTC	4 cut(s)	109, 491, 517, 728
HpyCH4III	ACNGT	4 cut(s)	185, 200, 356, 429
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	5 cut(s)	50, 155, 307, 410, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 308, 404
HpyF3I	CTNAG	2 cut(s)	16, 337
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	44, 150, 311, 324, 551
HspAI	GCGC	1 cut(s)	635
LmnI	GCTCC	2 cut(s)	143, 502
LpnPI	CCDG	8 cut(s)	126, 174, 201, 223, 488, 596, 726, 753
Lsp1109I	GCAGC	2 cut(s)	394, 695
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	3 cut(s)	81, 299, 422
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	5 cut(s)	26, 178, 328, 673, 773
MfeI	CAATTG	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	2 cut(s)	264, 557
MspI	CCGG	2 cut(s)	475, 583
MspR9I	CCNGG	2 cut(s)	189, 583
MunI	CAATTG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	3 cut(s)	152, 308, 404
NciI	CCSGG	1 cut(s)	583
NlaIII	CATG	5 cut(s)	44, 150, 311, 324, 551
NspI	RCATGY	2 cut(s)	311, 551
NspV	TTCGAA	1 cut(s)	600
PaeI	GCATGC	2 cut(s)	311, 551
PagI	TCATGA	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	365, 460, 611
PflMI	CCANNNNNTGG	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	409, 685
PsiI	TTATAA	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	77, 737
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	264, 557
SatI	GCNGC	2 cut(s)	408, 684
Sau96I	GGNCC	2 cut(s)	77, 737
ScrFI	CCNGG	2 cut(s)	189, 583
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	7 cut(s)	12, 193, 286, 343, 563, 688, 739
SfaNI	GCATC	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	600
SinI	GGWCC	2 cut(s)	77, 737
SphI	GCATGC	2 cut(s)	311, 551
SspMI	CTAG	3 cut(s)	81, 299, 422
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	187, 581
TaaI	ACNGT	4 cut(s)	185, 200, 356, 429
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	463, 600
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	3 cut(s)	365, 460, 611
Tru1I	TTAA	2 cut(s)	264, 557
Tru9I	TTAA	2 cut(s)	264, 557
TscAI	CASTG	1 cut(s)	747
TseI	GCWGC	2 cut(s)	407, 683
TspDTI	ATGAA	3 cut(s)	57, 364, 765
TspGWI	ACGGA	2 cut(s)	429, 620
TspRI	CASTG	1 cut(s)	747
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	77, 737
XapI	RAATTY	4 cut(s)	293, 674, 753, 768
XceI	RCATGY	2 cut(s)	311, 551
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	3 cut(s)	81, 299, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.