Rmu_sc0013078.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013078.1
OG0001470
Physical Location & Seq
Forward (+)
29914 .. 30573
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013078.1_g000008.1.cds

Sequence Viewer

Length: 660 bp
atgagccaattttggtggagtaaaggtggtggtgctagaggtatacattggggtggctgggagaagttatgtaaacgaaaagtagatggaggtcttggtttcagggatttgcgggcgttcaatcaagcaatgttagctaaaactgtctggaggattttctggggtaggaggtcgttggttagtgagatcttgcaagctaagtacttttcgaacacatgttttttgaatgcttctttggggacaactccttcggcaatttggagaggattgatttggggtaaacaggtgcttgattgtggaactaggtggcgtattggaaatggtcagcgagttagaattagagacgatcgttggttaccttgccctactagttttaaagttgtattgcctgtaaatcttccagcagagtggactgtggctaacctacttacagagcctggggcttggaatgttcctctaataaaatcaagcttcctagatcatgaggcagagatgatattaagtatgcctttggggttacgaattattccagataggttggtttggcattatacgaagaatggaagctacagtgtgaaaatagggtattgggtggctcgtgatttgatagcaaaaaagagggaagtgtggctgaatgtagctcttcaagtgtgtcggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

219

Amino Acids

25.17

Weight (kDa)

10.26

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 43
AciI CCGC 1 cut(s) 112
AfaI GTAC 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 3 cut(s) 121, 226, 647
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 5 cut(s) 137, 197, 471, 567, 641
AluI AGCT 5 cut(s) 137, 197, 471, 567, 641
Alw26I GTCTC 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 437
ArsI GACNNNNNNTTYG 2 cut(s) 232, 264
AsuII TTCGAA 1 cut(s) 209
BauI CACGAG 1 cut(s) 597
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 336
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 4 cut(s) 36, 303, 369, 476
BfmI CTRYAG 1 cut(s) 568
BglII AGATCT 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 437
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 437
BseMI GCAATG 1 cut(s) 135
BseYI CCCAGC 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 349
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 336
BsmBI CGTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 3 cut(s) 186, 346, 478
BspACI CCGC 1 cut(s) 112
BspHI TCATGA 1 cut(s) 481
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 437
BssMI GATC 3 cut(s) 186, 346, 478
BssNAI GTATAC 1 cut(s) 44
BssSI CACGAG 1 cut(s) 597
Bst1107I GTATAC 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 3 cut(s) 145, 415, 572
Bst6I CTCTTC 1 cut(s) 648
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 114, 195
BstDEI CTNAG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 354
BstKTI GATC 3 cut(s) 189, 349, 481
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 3 cut(s) 186, 346, 478
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 219
BstPI GGTNACC 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 568
BstX2I RGATCY 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 408
BstYI RGATCY 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 577
Cac8I GCNNGC 2 cut(s) 114, 195
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 1 cut(s) 481
Csp6I GTAC 1 cut(s) 202
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 2 cut(s) 216, 482
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 188, 348, 480
DpnII GATC 3 cut(s) 186, 346, 478
DraI TTTAAA 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco91I GGTNACC 1 cut(s) 354
EcoO65I GGTNACC 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 2 cut(s) 219, 485
FaiI YATR 6 cut(s) 44, 70, 217, 483, 506, 552
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 215, 481
FauI CCCGC 1 cut(s) 105
FblI GTMKAC 1 cut(s) 43
FspBI CTAG 4 cut(s) 36, 303, 369, 476
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 169
Hin1II CATG 2 cut(s) 219, 485
HindIII AAGCTT 1 cut(s) 469
Hpy166II GTNNAC 4 cut(s) 44, 74, 281, 411
Hpy188III TCNNGA 4 cut(s) 148, 482, 530, 599
Hpy8I GTNNAC 4 cut(s) 44, 74, 281, 411
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 3 cut(s) 145, 415, 572
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 2 cut(s) 219, 485
Kzo9I GATC 3 cut(s) 186, 346, 478
LguI GCTCTTC 1 cut(s) 648
MaeI CTAG 4 cut(s) 36, 303, 369, 476
MaeIII GTNAC 2 cut(s) 354, 516
MalI GATC 3 cut(s) 188, 348, 480
MboI GATC 3 cut(s) 186, 346, 478
MboII GAAGA 3 cut(s) 389, 568, 635
MflI RGATCY 1 cut(s) 186
MluCI AATT 4 cut(s) 8, 255, 336, 522
MnlI CCTC 8 cut(s) 32, 83, 144, 162, 257, 465, 478, 612
MseI TTAA 2 cut(s) 375, 500
MslI CAYNNNNRTG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 3 cut(s) 186, 346, 478
NlaIII CATG 2 cut(s) 219, 485
NspI RCATGY 1 cut(s) 219
NspV TTCGAA 1 cut(s) 209
PagI TCATGA 1 cut(s) 481
PciI ACATGT 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 1 cut(s) 232
Ple19I CGATCG 1 cut(s) 349
PscI ACATGT 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 436
PspEI GGTNACC 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 436
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 1 cut(s) 186
PvuI CGATCG 1 cut(s) 349
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 2 cut(s) 375, 500
Sau3AI GATC 3 cut(s) 186, 346, 478
ScaI AGTACT 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 568
SfuI TTCGAA 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 51
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 4 cut(s) 8, 255, 336, 522
SsiI CCGC 1 cut(s) 112
SspMI CTAG 4 cut(s) 36, 303, 369, 476
StyD4I CCNGG 1 cut(s) 436
TaaI ACNGT 3 cut(s) 145, 415, 572
TaqI TCGA 1 cut(s) 209
TasI AATT 4 cut(s) 8, 255, 336, 522
TatI WGTACW 1 cut(s) 201
Tru1I TTAA 2 cut(s) 375, 500
Tru9I TTAA 2 cut(s) 375, 500
TscAI CASTG 1 cut(s) 577
TspRI CASTG 1 cut(s) 577
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 4 cut(s) 36, 303, 369, 476
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.