Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000464.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

45322 .. 46879

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000464.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggttccagaggtgtggaagaaggtttggaagcttcatgttccaagcaagattaagttgttactttggagggcgtttcacaatttcctcccgtgtggtcagaacttacagaaacggagaataactatggatggatcgtgttggcaatgcggggctgcttgtgagtctactattcatgttttttgggaatgccctgctgcgagacatgtttggaagatgacatttttaagtgaagtctgtaaaacatggaaggaaccttctgtcatggatttattctcacatgtgtcgagtatagctgtcgtggctcaagctattcccacttattccataaatgtgttccaattgccaattggggtatgtaagaaattccagtctaaagtgagcaaattctggtggggaaagagtggcggtgtgagaggtattcattggagtagttgggagcatttatgtacaagtaaggaggcaggaggtctaggtgtccgggacttaaggccttttaatcagtcgatgcttgcaaaaacagtttggcgcattttctggggtagaacttctttggtaagtgagattttgcaagcaaaatactttccacagacttgtttcttaaatgcttttttggggactactccctcagcagtgtggagagggctattgtggggtaagcaggtgcttgatcaagggactagatggcgcattggcaatgggaggagggttagcataaagggcgatagatggctacctaccccatcacgttttaaagttgtttctcccctgcctataccagatgattggactgtcgaaggtcttttgatggaatcgggagcatggaacgtccctctaattcaatcactcttttttgcacatgaagctgagacaattctggcaatgcctttgggtttgacatctatcccggataagctaatttggcattttactaagaatggtaactttacagttaaaactggttactgggtagcttgtgcattgcaggagaagaagaatgggaacattgctgggtgtagctcttctatggttccagaggtgtggaagaaggtttggaagcttcatgttccaagcaagattaagttgttactttggagggcgtttcacaatttcctcccgtgtggtcagaacttacagaaacgggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

382

Amino Acids

43.69

Weight (kDa)

9.86

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	2 cut(s)	150, 408
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	365, 386
AfaI	GTAC	1 cut(s)	451
AflII	CTTAAG	1 cut(s)	487
AflIII	ACRYGT	2 cut(s)	205, 280
AgsI	TTSAA	1 cut(s)	842
AluBI	AGCT	8 cut(s)	34, 296, 311, 866, 916, 974, 1020, 1060
AluI	AGCT	8 cut(s)	34, 296, 311, 866, 916, 974, 1020, 1060
Alw26I	GTCTC	2 cut(s)	196, 863
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	2 cut(s)	155, 197
ApoI	RAATTY	2 cut(s)	365, 386
AspLEI	GCGC	2 cut(s)	531, 690
AsuC2I	CCSGG	2 cut(s)	482, 908
BbvCI	CCTCAGC	1 cut(s)	628
BbvI	GCAGC	2 cut(s)	142, 184
BccI	CCATC	5 cut(s)	125, 678, 723, 751, 802
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	2 cut(s)	482, 908
BcoDI	GTCTC	2 cut(s)	196, 863
BfaI	CTAG	2 cut(s)	473, 681
BfrI	CTTAAG	1 cut(s)	487
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	2 cut(s)	156, 198
BlsI	GCNGC	2 cut(s)	157, 199
Bme1390I	CCNGG	2 cut(s)	482, 908
BmiI	GGNNCC	3 cut(s)	6, 255, 1032
BmrFI	CCNGG	2 cut(s)	482, 908
BmrI	ACTGGG	1 cut(s)	976
BmsI	GCATC	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	976
Bpu10I	CCTNAGC	1 cut(s)	628
BpuEI	CTTGAG	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	482, 908
Bse1I	ACTGG	3 cut(s)	370, 964, 971
Bse3DI	GCAATG	5 cut(s)	152, 703, 888, 980, 1005
BseGI	GGATG	1 cut(s)	136
BseMI	GCAATG	5 cut(s)	152, 703, 888, 980, 1005
BseMII	CTCAG	2 cut(s)	642, 858
BseNI	ACTGG	3 cut(s)	370, 964, 971
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	2 cut(s)	142, 184
BseYI	CCCAGC	1 cut(s)	1010
BshFI	GGCC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	481, 908
BslFI	GGGAC	4 cut(s)	497, 631, 691, 815
BsmAI	GTCTC	2 cut(s)	196, 863
BsmFI	GGGAC	4 cut(s)	497, 631, 691, 815
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	493
Bsp1407I	TGTACA	1 cut(s)	449
Bsp143I	GATC	2 cut(s)	134, 670
BspACI	CCGC	2 cut(s)	150, 408
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	641, 859
BspLI	GGNNCC	3 cut(s)	6, 255, 1032
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	1027
BspTI	CTTAAG	1 cut(s)	487
BsrDI	GCAATG	5 cut(s)	152, 703, 888, 980, 1005
BsrGI	TGTACA	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	370, 964, 971
BssMI	GATC	2 cut(s)	134, 670
Bst4CI	ACNGT	3 cut(s)	523, 793, 952
Bst6I	CTCTTC	1 cut(s)	1027
BstAFI	CTTAAG	1 cut(s)	487
BstAUI	TGTACA	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	513, 573
BstDEI	CTNAG	3 cut(s)	628, 867, 933
BstF5I	GGATG	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	531, 690
BstKTI	GATC	2 cut(s)	137, 673
BstMAI	GTCTC	2 cut(s)	196, 863
BstMBI	GATC	2 cut(s)	134, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 720, 863, 922
BstNSI	RCATGY	2 cut(s)	209, 284
BstSCI	CCNGG	2 cut(s)	480, 906
BstV1I	GCAGC	2 cut(s)	142, 184
BstXI	CCANNNNNNTGG	3 cut(s)	15, 786, 1041
BsuRI	GGCC	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	639
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	2 cut(s)	513, 573
CfoI	GCGC	2 cut(s)	531, 690
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	9 cut(s)	38, 176, 206, 246, 265, 281, 822, 860, 1064
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	3 cut(s)	628, 867, 933
DpnI	GATC	2 cut(s)	136, 672
DpnII	GATC	2 cut(s)	134, 670
DraI	TTTAAA	1 cut(s)	754
Eam1104I	CTCTTC	1 cut(s)	1027
EarI	CTCTTC	1 cut(s)	1027
Eco147I	AGGCCT	1 cut(s)	493
FaeI	CATG	9 cut(s)	41, 179, 209, 249, 268, 284, 825, 863, 1067
FaqI	GGGAC	4 cut(s)	497, 631, 691, 815
FatI	CATG	9 cut(s)	37, 175, 205, 245, 264, 280, 821, 859, 1063
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	156, 198
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	156, 198
FspBI	CTAG	2 cut(s)	473, 681
GlaI	GCGC	2 cut(s)	530, 689
GluI	GCNGC	2 cut(s)	156, 198
GsaI	CCCAGC	1 cut(s)	1014
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	2 cut(s)	481, 908
HhaI	GCGC	2 cut(s)	531, 690
Hin1II	CATG	9 cut(s)	41, 179, 209, 249, 268, 284, 825, 863, 1067
Hin6I	GCGC	2 cut(s)	529, 688
HinP1I	GCGC	2 cut(s)	529, 688
HindIII	AAGCTT	2 cut(s)	32, 1058
HinfI	GANTC	2 cut(s)	164, 812
HpaII	CCGG	2 cut(s)	481, 908
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	102, 1128
Hpy188III	TCNNGA	3 cut(s)	8, 816, 1034
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	5 cut(s)	16, 244, 267, 791, 1042
HpyCH4III	ACNGT	3 cut(s)	523, 793, 952
HpyCH4IV	ACGT	2 cut(s)	748, 828
HpyCH4V	TGCA	5 cut(s)	515, 571, 857, 980, 985
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 720, 863, 922
HpyF3I	CTNAG	3 cut(s)	628, 867, 933
HpySE526I	ACGT	2 cut(s)	748, 828
Hsp92II	CATG	9 cut(s)	41, 179, 209, 249, 268, 284, 825, 863, 1067
HspAI	GCGC	2 cut(s)	529, 688
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	134, 670
LguI	GCTCTTC	1 cut(s)	1027
LmnI	GCTCC	2 cut(s)	439, 818
Lsp1109I	GCAGC	2 cut(s)	142, 184
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	2 cut(s)	473, 681
MaeII	ACGT	2 cut(s)	748, 828
MaeIII	GTNAC	4 cut(s)	60, 941, 962, 1086
MalI	GATC	2 cut(s)	136, 672
MboI	GATC	2 cut(s)	134, 670
MboII	GAAGA	6 cut(s)	31, 226, 1003, 1006, 1014, 1057
MfeI	CAATTG	2 cut(s)	341, 348
MluCI	AATT	9 cut(s)	82, 341, 348, 365, 386, 837, 873, 918, 1108
MlyI	GAGTC	1 cut(s)	173
MseI	TTAA	8 cut(s)	54, 227, 488, 498, 602, 753, 954, 1080
MslI	CAYNNNNRTG	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	487
MspI	CCGG	2 cut(s)	481, 908
MspR9I	CCNGG	2 cut(s)	482, 908
MunI	CAATTG	2 cut(s)	341, 348
Mva1269I	GAATGC	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	302, 720, 863, 922
NciI	CCSGG	2 cut(s)	482, 908
NdeII	GATC	2 cut(s)	134, 670
NlaIII	CATG	9 cut(s)	41, 179, 209, 249, 268, 284, 825, 863, 1067
NlaIV	GGNNCC	3 cut(s)	6, 255, 1032
NspI	RCATGY	2 cut(s)	209, 284
PaqCI	CACCTGC	1 cut(s)	652
PceI	AGGCCT	1 cut(s)	493
PciI	ACATGT	2 cut(s)	205, 280
PciSI	GCTCTTC	1 cut(s)	1027
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	812
PfoI	TCCNGGA	2 cut(s)	480, 906
PkrI	GCNGC	2 cut(s)	157, 199
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PscI	ACATGT	2 cut(s)	205, 280
PspFI	CCCAGC	1 cut(s)	1010
PspN4I	GGNNCC	3 cut(s)	6, 255, 1032
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	1027
SaqAI	TTAA	8 cut(s)	54, 227, 488, 498, 602, 753, 954, 1080
SatI	GCNGC	2 cut(s)	156, 198
Sau3AI	GATC	2 cut(s)	134, 670
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	482, 908
SfaNI	GCATC	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	306, 487
SmoI	CTYRAG	2 cut(s)	306, 487
Sse9I	AATT	9 cut(s)	82, 341, 348, 365, 386, 837, 873, 918, 1108
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	2 cut(s)	150, 408
SspMI	CTAG	2 cut(s)	473, 681
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	2 cut(s)	480, 906
TaaI	ACNGT	3 cut(s)	523, 793, 952
TaiI	ACGT	2 cut(s)	751, 831
TaqI	TCGA	3 cut(s)	287, 506, 795
TasI	AATT	9 cut(s)	82, 341, 348, 365, 386, 837, 873, 918, 1108
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	812
Tru1I	TTAA	8 cut(s)	54, 227, 488, 498, 602, 753, 954, 1080
Tru9I	TTAA	8 cut(s)	54, 227, 488, 498, 602, 753, 954, 1080
TscAI	CASTG	1 cut(s)	639
TseI	GCWGC	2 cut(s)	155, 197
TspDTI	ATGAA	5 cut(s)	26, 164, 413, 876, 1052
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	639
Vha464I	CTTAAG	1 cut(s)	487
XapI	RAATTY	2 cut(s)	365, 386
XceI	RCATGY	2 cut(s)	209, 284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	2 cut(s)	473, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.