Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

21739637 .. 21740471

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1177900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTTCTTTGGGGTTTGTGGCATGCTCGTAACTCCCTAATATGGGATGGGCAACGTGGACAACCTATGGAGGTAGGGCATAAGGTGGTATGCTGGTATCAGACATTTTTGGTATCCCATGAAGTGCAGAGGGTCTCCAGGCCAGTTCATCGACTCAAATGGTTAACCCCCTCTGATGGATGGGTCAAAATCAATGTTGATGGGGCCACACGGTTGGAGCATTTTTCTAGGGGAGTAGGAGCTGTATTGAAGGATGGGACAGGGACGTTTTTAGCAGCGGCAGCTTGGAGGAAGGAGGGTATTGGGTTTGCACTTCATGTGAAGTTTAAGGCAGTTTTGGAGGGCCTTCGGTTGGCAGAGAGGTTACAGGTTCGACGGGTTATTGTGGAGAGTGATTCCACTCTCGCTATTGCTACTATCAATAACTACTCTCGGAATTTGTCCAAGTTTGGTCTGCTAGTGGAGGATGTCAGGGAAGTGGCGGAGTTGCTTTCCTCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

168

Amino Acids

18.83

Weight (kDa)

9.83

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	65 - 165	1.3e-11	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	278, 482
AcsI	RAATTY	1 cut(s)	436
AfiI	CCNNNNNNNGG	4 cut(s)	42, 43, 176, 352
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	2 cut(s)	242, 284
AluI	AGCT	2 cut(s)	242, 284
Alw26I	GTCTC	1 cut(s)	139
AoxI	GGCC	3 cut(s)	140, 204, 343
ApeKI	GCWGC	2 cut(s)	275, 281
ApoI	RAATTY	1 cut(s)	436
AspS9I	GGNCC	2 cut(s)	204, 343
BbvI	GCAGC	2 cut(s)	287, 293
BccI	CCATC	5 cut(s)	41, 170, 174, 194, 248
BciT130I	CCWGG	1 cut(s)	139
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	3 cut(s)	228, 458, 502
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	276, 279, 282
BlsI	GCNGC	3 cut(s)	277, 280, 283
Bme1390I	CCNGG	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	204, 343
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 43, 176, 352
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	139
BseGI	GGATG	4 cut(s)	52, 185, 259, 472
BseLI	CCNNNNNNNGG	4 cut(s)	42, 43, 176, 352
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	287, 293
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	3 cut(s)	142, 206, 345
BslFI	GGGAC	2 cut(s)	271, 277
BslI	CCNNNNNNNGG	4 cut(s)	42, 43, 176, 352
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	2 cut(s)	271, 277
BsnI	GGCC	3 cut(s)	142, 206, 345
Bso31I	GGTCTC	1 cut(s)	139
BspACI	CCGC	2 cut(s)	278, 482
BspANI	GGCC	3 cut(s)	142, 206, 345
BspLI	GGNNCC	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	496
BstF5I	GGATG	4 cut(s)	52, 185, 259, 472
BstMAI	GTCTC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	287, 293
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	142, 206, 345
BtsCI	GGATG	4 cut(s)	52, 185, 259, 472
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	204, 343
CviAII	CATG	3 cut(s)	23, 119, 317
CviJI	RGCY	5 cut(s)	142, 206, 242, 284, 345
CviKI_1	RGCY	5 cut(s)	142, 206, 242, 284, 345
DdeI	CTNAG	1 cut(s)	496
EciI	GGCGGA	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	26, 122, 320
FaiI	YATR	7 cut(s)	24, 43, 68, 81, 91, 120, 318
FaqI	GGGAC	2 cut(s)	271, 277
FatI	CATG	3 cut(s)	22, 118, 316
Fnu4HI	GCNGC	3 cut(s)	276, 279, 282
FokI	GGATG	4 cut(s)	59, 192, 266, 479
Fsp4HI	GCNGC	3 cut(s)	276, 279, 282
FspBI	CTAG	3 cut(s)	228, 458, 502
GluI	GCNGC	3 cut(s)	276, 279, 282
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	142, 206, 345
Hin1II	CATG	3 cut(s)	26, 122, 320
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	153, 395
HpaI	GTTAAC	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	59, 165
Hpy188I	TCNGA	3 cut(s)	102, 175, 435
Hpy8I	GTNNAC	2 cut(s)	59, 165
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	244, 286, 356
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	2 cut(s)	55, 266
HpyCH4V	TGCA	2 cut(s)	127, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	496
HpySE526I	ACGT	2 cut(s)	55, 266
Hsp92II	CATG	3 cut(s)	26, 122, 320
KspAI	GTTAAC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	217, 239
LpnPI	CCDG	7 cut(s)	79, 124, 151, 156, 246, 353, 457
Lsp1109I	GCAGC	2 cut(s)	287, 293
MaeI	CTAG	3 cut(s)	228, 458, 502
MaeII	ACGT	2 cut(s)	55, 266
MaeIII	GTNAC	2 cut(s)	29, 363
MluCI	AATT	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	8 cut(s)	64, 123, 181, 282, 289, 334, 354, 457
MseI	TTAA	2 cut(s)	164, 327
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	281
NlaIII	CATG	3 cut(s)	26, 122, 320
NlaIV	GGNNCC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	277, 280, 283
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	204, 343
SaqAI	TTAA	2 cut(s)	164, 327
SatI	GCNGC	3 cut(s)	276, 279, 282
Sau96I	GGNCC	2 cut(s)	204, 343
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	9 cut(s)	58, 67, 75, 87, 244, 269, 286, 365, 372
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	2 cut(s)	278, 482
SspMI	CTAG	3 cut(s)	228, 458, 502
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	2 cut(s)	58, 269
TaqI	TCGA	2 cut(s)	151, 373
TasI	AATT	1 cut(s)	436
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	164, 327
Tru9I	TTAA	2 cut(s)	164, 327
TseI	GCWGC	2 cut(s)	275, 281
TspDTI	ATGAA	3 cut(s)	135, 137, 305
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	3 cut(s)	228, 458, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.