FvH4_3g07263

ribonuclease H protein At1g65750-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
4323132 .. 4323853
722 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07263.t1

Sequence Viewer

Length: 645 bp
ATGAACAAAATTCAAGGTTGGGAAGGTAAACTGCTTTCCAAGGGTGGTAAGGAGGTGTTGATCAAAGCTGTGGCTCAGTCAATACCTACTTATACTATGAGTGTTTTCCAATTACCAACAGGGATTTGTAAGGAAATTAACAAGCATGTAGCAAGATACTGGTGGGGCAATTCTGGTGGAAAAGGTATACATTGGAGGAGGTGGGATGCACTTTGTGTGCCGAAGGGAGAAGGTGGCTTGGGTTTTAGGGAGTTTCAGGGTTTTAATCAAGCTTTGGTTGGAAAAATTGGTTGGAGGCTAATTCAAGATGAGGAGTCTTTGGTTGGTCGGATGTTGAAGGCTAAATACTACCCTAATAGTTCTTTTTTGGAGGCTGTTATTGGGAGGAATCCTTCCAGTATTTGGAGGGCTGTGATGTGGGGTAAACAACTTCTAACTAAAGGTCTTCGGTGGAGGGTAAGCAATGGGGCCGATATTCGAGTTTTTCAAGACCCTTGGGTTCCTGGAATACCTGATTTTAGAATTGCATGGAAGAATGGCTGTGATTGGAATATGAGAGTGAATGAGCTGATTTCGGTGTCCGGTTTGTGGGATATGCATAGGCTGGAGCAAGTAGCTACAATGCAGGAAGTGGAGGCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

24.39

Weight (kDa)

9.71

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 402
AccI GTMKAC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 402, 588
AgsI TTSAA 4 cut(s) 14, 305, 337, 488
AjnI CCWGG 1 cut(s) 502
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
AluBI AGCT 4 cut(s) 68, 272, 568, 617
AluI AGCT 4 cut(s) 68, 272, 568, 617
AoxI GGCC 1 cut(s) 468
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 468
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbsI GAAGAC 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 504
BclI TGATCA 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 2 cut(s) 469, 501
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 626
BsaJI CCNNGG 2 cut(s) 39, 494
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 588
Bse1I ACTGG 2 cut(s) 164, 396
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 39, 494
BseGI GGATG 2 cut(s) 211, 336
BseLI CCNNNNNNNGG 2 cut(s) 402, 588
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 164, 396
BseRI GAGGAG 2 cut(s) 211, 326
BshFI GGCC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 582
BslI CCNNNNNNNGG 2 cut(s) 402, 588
BsnI GGCC 1 cut(s) 470
Bsp143I GATC 1 cut(s) 60
BspANI GGCC 1 cut(s) 470
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 469, 501
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 2 cut(s) 164, 396
BssECI CCNNGG 2 cut(s) 39, 494
BssMI GATC 1 cut(s) 60
BssNAI GTATAC 1 cut(s) 188
BssT1I CCWWGG 2 cut(s) 39, 494
Bst1107I GTATAC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 504
BstDEI CTNAG 2 cut(s) 75, 642
BstF5I GGATG 2 cut(s) 211, 336
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 437
BstZ17I GTATAC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 470
BtsCI GGATG 2 cut(s) 211, 336
Cfr13I GGNCC 1 cut(s) 468
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 2 cut(s) 146, 528
DdeI CTNAG 2 cut(s) 75, 642
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 39, 494
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 2 cut(s) 39, 494
EcoT22I ATGCAT 1 cut(s) 600
ErhI CCWWGG 2 cut(s) 39, 494
FaeI CATG 2 cut(s) 149, 531
FaiI YATR 8 cut(s) 93, 98, 147, 188, 529, 554, 596, 600
FatI CATG 2 cut(s) 145, 527
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 1 cut(s) 187
FokI GGATG 2 cut(s) 218, 343
GsuI CTGGAG 1 cut(s) 626
HaeIII GGCC 1 cut(s) 470
HapII CCGG 1 cut(s) 582
Hin1II CATG 2 cut(s) 149, 531
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 2 cut(s) 314, 388
HpaII CCGG 1 cut(s) 582
Hpy166II GTNNAC 3 cut(s) 29, 188, 425
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 2 cut(s) 305, 488
Hpy8I GTNNAC 3 cut(s) 29, 188, 425
HpyAV CCTTC 5 cut(s) 17, 217, 224, 331, 402
HpyCH4V TGCA 4 cut(s) 209, 527, 598, 625
HpyF3I CTNAG 2 cut(s) 75, 642
Hsp92II CATG 2 cut(s) 149, 531
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 607
LweI GCATC 1 cut(s) 196
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 2 cut(s) 437, 544
MluCI AATT 7 cut(s) 9, 110, 135, 169, 285, 300, 522
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 3 cut(s) 259, 272, 308
Mph1103I ATGCAT 1 cut(s) 600
MseI TTAA 2 cut(s) 138, 264
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 504
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 149, 531
NlaIV GGNNCC 2 cut(s) 469, 501
NsiI ATGCAT 1 cut(s) 600
NspI RCATGY 1 cut(s) 149
PfeI GAWTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 402
PfoI TCCNGGA 1 cut(s) 502
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 2 cut(s) 469, 501
PspPI GGNCC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 138, 264
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 504
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 7 cut(s) 9, 110, 135, 169, 285, 300, 522
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 2 cut(s) 39, 494
TaqI TCGA 1 cut(s) 478
TasI AATT 7 cut(s) 9, 110, 135, 169, 285, 300, 522
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 138, 264
Tru9I TTAA 2 cut(s) 138, 264
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 402
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 187
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.