Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

48505187 .. 48509199

Gene Structure 4013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0379900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGTTGGATCGGCGAGACAGTGGACTCCGTCAAATCCCTGCAGATCCGGCAGGTCCTCACCCAGGCCGTCAGTCTCGGTATGATTGTTACATCTGCACTTATAATATGGAAGGCATTGATGTGCGCTACCGGCAGTGAATCTCCTGTTGTTGTTGTTTTGTCTGGAAGTATGGAACCGGGCTTCAGGAGGGGGGACATTTTGTTCTTGCACATGAGTAAAGAACCCATTCGTGCTGGAGAAATTGTTGTCTTTAATGTTGACGGCCGTGAGATTCCAATCGTCCATCGCGTCATTAAGGTTCATGAAAGAGAAGATACTGGAGAAGTTGATGTCCTCACAAAAGGAGATAACAATTATGGGGATGACAGACTTCTGTATGCTCAGGGTCAGTTGTGGCTCCAACGGCACCATATTATGGGTAGAGCTGTGGGGTTCTTACCCTATGTTGGCTGGGTGACAATTATCATGACTGAAAAGCCAATTATTAAGTATATTCTCATTGGCGCGTTGGGGTTGCTTGTTATAACTTCAAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

180

Amino Acids

19.96

Weight (kDa)

6.52

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S24	PF00717	35 - 114	1.3e-09	Peptidase S24-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	104, 527
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccII	CGCG	2 cut(s)	291, 509
AclWI	GGATC	2 cut(s)	17, 40
AcoI	YGGCCR	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	169
AfiI	CCNNNNNNNGG	3 cut(s)	64, 418, 449
AgsI	TTSAA	1 cut(s)	534
AjnI	CCWGG	1 cut(s)	63
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
Alw26I	GTCTC	2 cut(s)	11, 80
AlwI	GGATC	2 cut(s)	17, 40
AoxI	GGCC	2 cut(s)	66, 265
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	128, 509
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	52, 469
AvaII	GGWCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	408
BccI	CCATC	1 cut(s)	294
BceAI	ACGGC	4 cut(s)	53, 252, 280, 422
BciT130I	CCWGG	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	11, 80
BfmI	CTRYAG	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	65, 180
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	177, 401, 410
BmrFI	CCNGG	2 cut(s)	65, 180
BpmI	CTGGAG	2 cut(s)	258, 342
Bpu10I	CCTNAGC	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 418, 449
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	325
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	3 cut(s)	64, 418, 449
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	325
BseX3I	CGGCCG	1 cut(s)	265
BseYI	CCCAGC	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	2 cut(s)	291, 509
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	68, 267
BshNI	GGYRCC	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	49, 132, 179
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	64, 418, 449
BsmAI	GTCTC	2 cut(s)	11, 80
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	68, 267
Bsp143I	GATC	2 cut(s)	9, 45
BspANI	GGCC	2 cut(s)	68, 267
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	291, 509
BspHI	TCATGA	2 cut(s)	304, 468
BspLI	GGNNCC	3 cut(s)	177, 401, 410
BspMAI	CTGCAG	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	17, 40
BspT107I	GGYRCC	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	9, 45
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	2 cut(s)	291, 509
BstHHI	GCGC	2 cut(s)	128, 509
BstKTI	GATC	2 cut(s)	12, 48
BstMAI	GTCTC	2 cut(s)	11, 80
BstMBI	GATC	2 cut(s)	9, 45
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 132, 406
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	63, 178
BstSFI	CTRYAG	1 cut(s)	41
BstUI	CGCG	2 cut(s)	291, 509
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BstZI	CGGCCG	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	68, 267
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	27, 142
BveI	ACCTGC	1 cut(s)	43
CciI	TCATGA	2 cut(s)	304, 468
CfoI	GCGC	2 cut(s)	128, 509
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	280
CviAII	CATG	3 cut(s)	214, 305, 469
CviJI	RGCY	7 cut(s)	68, 183, 267, 400, 428, 453, 481
CviKI_1	RGCY	7 cut(s)	68, 183, 267, 400, 428, 453, 481
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	11, 47
DpnII	GATC	2 cut(s)	9, 45
EaeI	YGGCCR	1 cut(s)	265
EagI	CGGCCG	1 cut(s)	265
EclXI	CGGCCG	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	217, 308, 472
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	213, 304, 468
FokI	GGATG	1 cut(s)	377
GlaI	GCGC	2 cut(s)	127, 508
GsaI	CCCAGC	1 cut(s)	457
GsuI	CTGGAG	2 cut(s)	258, 342
HaeIII	GGCC	2 cut(s)	68, 267
HapII	CCGG	3 cut(s)	49, 132, 179
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	2 cut(s)	128, 509
Hin1II	CATG	3 cut(s)	217, 308, 472
Hin6I	GCGC	2 cut(s)	126, 507
HinP1I	GCGC	2 cut(s)	126, 507
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	26, 140, 274
HpaII	CCGG	3 cut(s)	49, 132, 179
HphI	GGTGA	2 cut(s)	52, 469
Hpy166II	GTNNAC	2 cut(s)	25, 262
Hpy188III	TCNNGA	4 cut(s)	165, 187, 305, 469
Hpy8I	GTNNAC	2 cut(s)	25, 262
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	43, 98, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 132, 406
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	217, 308, 472
HspAI	GCGC	2 cut(s)	126, 507
Kzo9I	GATC	2 cut(s)	9, 45
LmnI	GCTCC	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	88, 457
MalI	GATC	2 cut(s)	11, 47
MboI	GATC	2 cut(s)	9, 45
MboII	GAAGA	1 cut(s)	326
MflI	RGATCY	1 cut(s)	45
MluCI	AATT	4 cut(s)	243, 355, 462, 483
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	68, 183, 347
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	3 cut(s)	255, 297, 489
MslI	CAYNNNNRTG	1 cut(s)	121
MspI	CCGG	3 cut(s)	49, 132, 179
MspR9I	CCNGG	2 cut(s)	65, 180
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	291, 509
MwoI	GCNNNNNNNGC	3 cut(s)	49, 132, 406
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	9, 45
NlaIII	CATG	3 cut(s)	217, 308, 472
NlaIV	GGNNCC	3 cut(s)	177, 401, 410
NmuCI	GTSAC	1 cut(s)	457
PagI	TCATGA	2 cut(s)	304, 468
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	140, 274
PflFI	GACNNNGTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	418
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	55
PsiI	TTATAA	2 cut(s)	104, 527
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	177, 401, 410
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	255, 297, 489
Sau3AI	GATC	2 cut(s)	9, 45
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	65, 180
SetI	ASST	3 cut(s)	57, 303, 430
SfcI	CTRYAG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	4 cut(s)	243, 355, 462, 483
StyD4I	CCNGG	2 cut(s)	63, 178
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	4 cut(s)	243, 355, 462, 483
TfiI	GAWTC	2 cut(s)	140, 274
Tru1I	TTAA	3 cut(s)	255, 297, 489
Tru9I	TTAA	3 cut(s)	255, 297, 489
TscAI	CASTG	2 cut(s)	27, 142
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	293, 321
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	27, 142
Tth111I	GACNNNGTC	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.