Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013453.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

7841 .. 8335

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013453.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgagccaattttggtggagtaaaggtggtggtgctagaggtatacattggggtggctgggagaagttatgtaaacgaaaagtagatggaggtcttggtttcagggatttgcgggcgttcaatcaagcaatgttagctaaaactgtctggaggattttctggggtaggaggtcgttggttagtgagatcttgcaagctaagtacttttcgaacacatgttttttgaatgcttctttggggacaactccttcggcaatttggagaggattgatttggggtaaacaggtgcttgattgtggaactaggtggcgtattggaaatggtcagcgagttagaattagagacgatcgttggttaccttgccctactagttttaaagttgtattgcctgtaaatcttctagcagagtggactgtggctaacctacttacagagcctggggcttggaatgttcctctaataaaatcaagcttcctagatcatgagcagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

164

Amino Acids

18.82

Weight (kDa)

10.51

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	121, 226
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	137, 197, 471
AluI	AGCT	3 cut(s)	137, 197, 471
Alw26I	GTCTC	1 cut(s)	336
AlwNI	CAGNNNCTG	1 cut(s)	437
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AsuII	TTCGAA	1 cut(s)	209
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	336
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	5 cut(s)	36, 303, 369, 401, 476
BglII	AGATCT	1 cut(s)	186
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	186, 346, 478
BspACI	CCGC	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	3 cut(s)	186, 346, 478
BssNAI	GTATAC	1 cut(s)	44
Bst1107I	GTATAC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	145, 415
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	114, 195
BstDEI	CTNAG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	354
BstKTI	GATC	3 cut(s)	189, 349, 481
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	186, 346, 478
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	219
BstPI	GGTNACC	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BstZ17I	GTATAC	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	114, 195
CaiI	CAGNNNCTG	1 cut(s)	437
CciI	TCATGA	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	202
CspCI	CAANNNNNGTGG	1 cut(s)	31
CviAII	CATG	2 cut(s)	216, 482
CviJI	RGCY	8 cut(s)	6, 57, 137, 197, 419, 436, 443, 471
CviKI_1	RGCY	8 cut(s)	6, 57, 137, 197, 419, 436, 443, 471
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	188, 348, 480
DpnII	GATC	3 cut(s)	186, 346, 478
DraI	TTTAAA	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	354
EcoO65I	GGTNACC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	2 cut(s)	219, 485
FaiI	YATR	4 cut(s)	44, 70, 217, 483
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	215, 481
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	43
FspBI	CTAG	5 cut(s)	36, 303, 369, 401, 476
GsaI	CCCAGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	169
Hin1II	CATG	2 cut(s)	219, 485
HindIII	AAGCTT	1 cut(s)	469
Hpy166II	GTNNAC	4 cut(s)	44, 74, 281, 411
Hpy188III	TCNNGA	2 cut(s)	148, 482
Hpy8I	GTNNAC	4 cut(s)	44, 74, 281, 411
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	145, 415
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	219, 485
Kzo9I	GATC	3 cut(s)	186, 346, 478
LpnPI	CCDG	8 cut(s)	43, 88, 133, 145, 269, 402, 423, 450
MaeI	CTAG	5 cut(s)	36, 303, 369, 401, 476
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	3 cut(s)	188, 348, 480
MboI	GATC	3 cut(s)	186, 346, 478
MboII	GAAGA	1 cut(s)	389
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	3 cut(s)	8, 255, 336
MnlI	CCTC	6 cut(s)	32, 83, 144, 162, 257, 465
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	3 cut(s)	186, 346, 478
NlaIII	CATG	2 cut(s)	219, 485
NspI	RCATGY	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	209
PagI	TCATGA	1 cut(s)	481
PciI	ACATGT	1 cut(s)	215
PctI	GAATGC	1 cut(s)	232
Ple19I	CGATCG	1 cut(s)	349
PscI	ACATGT	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	186
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	375
Sau3AI	GATC	3 cut(s)	186, 346, 478
ScaI	AGTACT	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	51
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	3 cut(s)	8, 255, 336
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	5 cut(s)	36, 303, 369, 401, 476
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	145, 415
TaqI	TCGA	1 cut(s)	209
TasI	AATT	3 cut(s)	8, 255, 336
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
XceI	RCATGY	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	5 cut(s)	36, 303, 369, 401, 476
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.