ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2822 |
| AarI | CACCTGC | 1 cut(s) | 3040 |
| AatII | GACGTC | 1 cut(s) | 2678 |
| Acc36I | ACCTGC | 1 cut(s) | 3040 |
| AccB1I | GGYRCC | 1 cut(s) | 2436 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1085, 2813 |
| AccI | GTMKAC | 1 cut(s) | 895 |
| AciI | CCGC | 5 cut(s) | 1238, 1804, 2483, 2495, 2588 |
| AclWI | GGATC | 3 cut(s) | 369, 1911, 1994 |
| AcoI | YGGCCR | 3 cut(s) | 707, 924, 2955 |
| AcsI | RAATTY | 8 cut(s) | 53, 701, 1089, 1296, 1305, 1695, 1822, 2023 |
| AcuI | CTGAAG | 4 cut(s) | 524, 893, 2381, 3105 |
| AcyI | GRCGYC | 1 cut(s) | 2675 |
| AdeI | CACNNNGTG | 1 cut(s) | 806 |
| AfaI | GTAC | 5 cut(s) | 135, 1386, 1492, 2463, 2668 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1085, 1657, 1926, 2196, 2386, 2778, 2813 |
| AflIII | ACRYGT | 1 cut(s) | 3148 |
| AgeI | ACCGGT | 1 cut(s) | 1650 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1362 |
| AjnI | CCWGG | 3 cut(s) | 5, 529, 2011 |
| Alw21I | GWGCWC | 5 cut(s) | 1060, 1213, 1941, 2601, 3178 |
| Alw26I | GTCTC | 4 cut(s) | 2666, 2698, 2851, 3020 |
| Alw44I | GTGCAC | 1 cut(s) | 3174 |
| AlwI | GGATC | 3 cut(s) | 369, 1911, 1994 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2813 |
| AoxI | GGCC | 9 cut(s) | 707, 924, 1833, 2484, 2802, 2955, 2988, 3236, 3272 |
| ApaLI | GTGCAC | 1 cut(s) | 3174 |
| ApeKI | GCWGC | 5 cut(s) | 10, 848, 1564, 2605, 3080 |
| ApoI | RAATTY | 8 cut(s) | 53, 701, 1089, 1296, 1305, 1695, 1822, 2023 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 13, 45, 1877, 1909 |
| AseI | ATTAAT | 1 cut(s) | 827 |
| AsiGI | ACCGGT | 1 cut(s) | 1650 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1299, 3105 |
| AspLEI | GCGC | 1 cut(s) | 2361 |
| AspS9I | GGNCC | 5 cut(s) | 533, 1102, 1834, 2803, 3236 |
| AsuHPI | GGTGA | 4 cut(s) | 248, 596, 607, 799 |
| AsuII | TTCGAA | 2 cut(s) | 746, 3154 |
| AsuNHI | GCTAGC | 1 cut(s) | 2270 |
| AvaII | GGWCC | 2 cut(s) | 533, 1102 |
| BaeGI | GKGCMC | 1 cut(s) | 3178 |
| BalI | TGGCCA | 2 cut(s) | 926, 2957 |
| BanI | GGYRCC | 1 cut(s) | 2436 |
| BanII | GRGCYC | 4 cut(s) | 1060, 1213, 1941, 2601 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2222, 2254 |
| BbsI | GAAGAC | 5 cut(s) | 76, 99, 755, 1606, 2185 |
| Bbv12I | GWGCWC | 5 cut(s) | 1060, 1213, 1941, 2601, 3178 |
| BbvI | GCAGC | 4 cut(s) | 860, 1551, 2592, 3067 |
| BceAI | ACGGC | 2 cut(s) | 2436, 2975 |
| BciT130I | CCWGG | 3 cut(s) | 7, 531, 2013 |
| BciVI | GTATCC | 1 cut(s) | 2553 |
| BclI | TGATCA | 1 cut(s) | 2566 |
| BcoDI | GTCTC | 4 cut(s) | 2666, 2698, 2851, 3020 |
| BfaI | CTAG | 3 cut(s) | 167, 1445, 2271 |
| BfmI | CTRYAG | 1 cut(s) | 11 |
| BfoI | RGCGCY | 1 cut(s) | 2362 |
| BfuAI | ACCTGC | 1 cut(s) | 3040 |
| BfuI | GTATCC | 1 cut(s) | 2553 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3244 |
| BglII | AGATCT | 1 cut(s) | 3124 |
| BisI | GCNGC | 6 cut(s) | 11, 849, 1565, 2484, 2606, 3081 |
| BlsI | GCNGC | 6 cut(s) | 12, 850, 1566, 2485, 2607, 3082 |
| BmcAI | AGTACT | 1 cut(s) | 2668 |
| Bme1390I | CCNGG | 3 cut(s) | 7, 531, 2013 |
| Bme18I | GGWCC | 2 cut(s) | 533, 1102 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1362 |
| BmgT120I | GGNCC | 5 cut(s) | 533, 1102, 1834, 2803, 3236 |
| BmiI | GGNNCC | 6 cut(s) | 1103, 1104, 2010, 2102, 2438, 2805 |
| BmrFI | CCNGG | 3 cut(s) | 7, 531, 2013 |
| BmrI | ACTGGG | 2 cut(s) | 473, 2787 |
| BmsI | GCATC | 4 cut(s) | 523, 1252, 2176, 2331 |
| BmtI | GCTAGC | 1 cut(s) | 2274 |
| BmuI | ACTGGG | 2 cut(s) | 473, 2787 |
| BpiI | GAAGAC | 5 cut(s) | 76, 99, 755, 1606, 2185 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 776, 808, 2398, 2430 |
| BpmI | CTGGAG | 3 cut(s) | 411, 2039, 2585 |
| Bpu14I | TTCGAA | 2 cut(s) | 746, 3154 |
| BpuEI | CTTGAG | 2 cut(s) | 628, 1569 |
| Bsa29I | ATCGAT | 1 cut(s) | 322 |
| BsaAI | YACGTR | 1 cut(s) | 1388 |
| BsaHI | GRCGYC | 1 cut(s) | 2675 |
| BsaJI | CCNNGG | 5 cut(s) | 277, 927, 1084, 1827, 2003 |
| BsaWI | WCCGGW | 5 cut(s) | 535, 781, 1650, 2433, 2534 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1094, 1124, 3000, 3030 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1085, 1657, 1926, 2196, 2386, 2778, 2813 |
| Bse118I | RCCGGY | 1 cut(s) | 1650 |
| Bse1I | ACTGG | 7 cut(s) | 468, 1618, 2179, 2246, 2636, 2782, 3166 |
| Bse3DI | GCAATG | 2 cut(s) | 730, 1359 |
| BseBI | CCWGG | 3 cut(s) | 7, 531, 2013 |
| BseCI | ATCGAT | 1 cut(s) | 322 |
| BseDI | CCNNGG | 5 cut(s) | 277, 927, 1084, 1827, 2003 |
| BseGI | GGATG | 9 cut(s) | 405, 412, 514, 544, 1246, 2531, 2596, 2631, 2788 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1085, 1657, 1926, 2196, 2386, 2778, 2813 |
| BseMI | GCAATG | 2 cut(s) | 730, 1359 |
| BseMII | CTCAG | 6 cut(s) | 807, 950, 1754, 2429, 2661, 3129 |
| BseNI | ACTGG | 7 cut(s) | 468, 1618, 2179, 2246, 2636, 2782, 3166 |
| BseRI | GAGGAG | 5 cut(s) | 892, 1328, 1655, 2270, 2609 |
| BseSI | GKGCMC | 1 cut(s) | 3178 |
| BseX3I | CGGCCG | 1 cut(s) | 707 |
| BseXI | GCAGC | 4 cut(s) | 860, 1551, 2592, 3067 |
| BseYI | CCCAGC | 3 cut(s) | 1527, 1553, 2915 |
| BsgI | GTGCAG | 1 cut(s) | 3068 |
| Bsh1285I | CGRYCG | 1 cut(s) | 710 |
| BshFI | GGCC | 9 cut(s) | 709, 926, 1835, 2486, 2804, 2957, 2990, 3238, 3274 |
| BshNI | GGYRCC | 1 cut(s) | 2436 |
| BshTI | ACCGGT | 1 cut(s) | 1650 |
| BshVI | ATCGAT | 1 cut(s) | 322 |
| BsiEI | CGRYCG | 1 cut(s) | 710 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1060, 1213, 1941, 2601, 3178 |
| BsiSI | CCGG | 5 cut(s) | 536, 782, 1651, 2434, 2535 |
| BslFI | GGGAC | 4 cut(s) | 1115, 1409, 2758, 2917 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1085, 1657, 1926, 2196, 2386, 2778, 2813 |
| BsmAI | GTCTC | 4 cut(s) | 2666, 2698, 2851, 3020 |
| BsmBI | CGTCTC | 1 cut(s) | 2666 |
| BsmFI | GGGAC | 4 cut(s) | 1115, 1409, 2758, 2917 |
| BsmI | GAATGC | 1 cut(s) | 1442 |
| BsnI | GGCC | 9 cut(s) | 709, 926, 1835, 2486, 2804, 2957, 2990, 3238, 3274 |
| Bsp119I | TTCGAA | 2 cut(s) | 746, 3154 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1060, 1213, 1941, 2601, 3178 |
| Bsp1407I | TGTACA | 1 cut(s) | 2461 |
| BspACI | CCGC | 5 cut(s) | 1238, 1804, 2483, 2495, 2588 |
| BspANI | GGCC | 9 cut(s) | 709, 926, 1835, 2486, 2804, 2957, 2990, 3238, 3274 |
| BspCNI | CTCAG | 6 cut(s) | 806, 951, 1755, 2428, 2662, 3130 |
| BspDI | ATCGAT | 1 cut(s) | 322 |
| BspHI | TCATGA | 1 cut(s) | 1432 |
| BspLI | GGNNCC | 6 cut(s) | 1103, 1104, 2010, 2102, 2438, 2805 |
| BspMAI | CTGCAG | 1 cut(s) | 15 |
| BspMI | ACCTGC | 1 cut(s) | 3040 |
| BspOI | GCTAGC | 1 cut(s) | 2274 |
| BspPI | GGATC | 3 cut(s) | 369, 1911, 1994 |
| BspQI | GCTCTTC | 1 cut(s) | 1788 |
| BspT104I | TTCGAA | 2 cut(s) | 746, 3154 |
| BspT107I | GGYRCC | 1 cut(s) | 2436 |
| BsrDI | GCAATG | 2 cut(s) | 730, 1359 |
| BsrFI | RCCGGY | 1 cut(s) | 1650 |
| BsrGI | TGTACA | 1 cut(s) | 2461 |
| BsrI | ACTGG | 7 cut(s) | 468, 1618, 2179, 2246, 2636, 2782, 3166 |
| BssAI | RCCGGY | 1 cut(s) | 1650 |
| BssECI | CCNNGG | 5 cut(s) | 277, 927, 1084, 1827, 2003 |
| BssNI | GRCGYC | 1 cut(s) | 2675 |
| BssT1I | CCWWGG | 3 cut(s) | 927, 1827, 2003 |
| Bst2UI | CCWGG | 3 cut(s) | 7, 531, 2013 |
| Bst4CI | ACNGT | 9 cut(s) | 252, 278, 437, 1019, 1030, 1270, 1459, 1542, 2584 |
| BstACI | GRCGYC | 1 cut(s) | 2675 |
| BstAUI | TGTACA | 1 cut(s) | 2461 |
| BstBAI | YACGTR | 1 cut(s) | 1388 |
| BstBI | TTCGAA | 2 cut(s) | 746, 3154 |
| BstC8I | GCNNGC | 3 cut(s) | 2191, 2272, 2488 |
| BstDSI | CCRYGG | 2 cut(s) | 277, 1084 |
| BstF5I | GGATG | 9 cut(s) | 405, 412, 514, 544, 1246, 2531, 2596, 2631, 2788 |
| BstH2I | RGCGCY | 1 cut(s) | 2362 |
| BstHHI | GCGC | 1 cut(s) | 2361 |
| BstMAI | GTCTC | 4 cut(s) | 2666, 2698, 2851, 3020 |
| BstMCI | CGRYCG | 1 cut(s) | 710 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1208, 1271, 2492, 2605, 2810, 3244 |
| BstNI | CCWGG | 3 cut(s) | 7, 531, 2013 |
| BstNSI | RCATGY | 2 cut(s) | 3152, 3182 |
| BstSCI | CCNGG | 3 cut(s) | 5, 529, 2011 |
| BstSFI | CTRYAG | 1 cut(s) | 11 |
| BstSLI | GKGCMC | 1 cut(s) | 3178 |
| BstV1I | GCAGC | 4 cut(s) | 860, 1551, 2592, 3067 |
| BstV2I | GAAGAC | 5 cut(s) | 76, 99, 755, 1606, 2185 |
| BstX2I | RGATCY | 3 cut(s) | 1916, 1999, 3124 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2965 |
| BstYI | RGATCY | 3 cut(s) | 1916, 1999, 3124 |
| BstZI | CGGCCG | 1 cut(s) | 707 |
| Bsu15I | ATCGAT | 1 cut(s) | 322 |
| BsuI | GTATCC | 1 cut(s) | 2553 |
| BsuRI | GGCC | 9 cut(s) | 709, 926, 1835, 2486, 2804, 2957, 2990, 3238, 3274 |
| BsuTUI | ATCGAT | 1 cut(s) | 322 |
| BtgI | CCRYGG | 2 cut(s) | 277, 1084 |
| BtgZI | GCGATG | 1 cut(s) | 2588 |
| BtsCI | GGATG | 9 cut(s) | 405, 412, 514, 544, 1246, 2531, 2596, 2631, 2788 |
| BtsIMutI | CAGTG | 3 cut(s) | 1047, 1455, 2405 |
| BveI | ACCTGC | 1 cut(s) | 3040 |
| Cac8I | GCNNGC | 3 cut(s) | 2191, 2272, 2488 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2813 |
| CciI | TCATGA | 1 cut(s) | 1432 |
| CfoI | GCGC | 1 cut(s) | 2361 |
| Cfr10I | RCCGGY | 1 cut(s) | 1650 |
| Cfr13I | GGNCC | 5 cut(s) | 533, 1102, 1834, 2803, 3236 |
| ClaI | ATCGAT | 1 cut(s) | 322 |
| CseI | GACGC | 1 cut(s) | 31 |
| Csp6I | GTAC | 5 cut(s) | 134, 1385, 1491, 2462, 2667 |
| CspAI | ACCGGT | 1 cut(s) | 1650 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2934, 2969 |
| CviQI | GTAC | 5 cut(s) | 134, 1385, 1491, 2462, 2667 |
| DraIII | CACNNNGTG | 1 cut(s) | 806 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1362 |
| EaeI | YGGCCR | 3 cut(s) | 707, 924, 2955 |
| EagI | CGGCCG | 1 cut(s) | 707 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1362 |
| EciI | GGCGGA | 1 cut(s) | 2603 |
| Ecl136II | GAGCTC | 4 cut(s) | 1058, 1211, 1939, 2599 |
| EclXI | CGGCCG | 1 cut(s) | 707 |
| Eco130I | CCWWGG | 3 cut(s) | 927, 1827, 2003 |
| Eco147I | AGGCCT | 1 cut(s) | 3274 |
| Eco24I | GRGCYC | 4 cut(s) | 1060, 1213, 1941, 2601 |
| Eco47I | GGWCC | 2 cut(s) | 533, 1102 |
| Eco52I | CGGCCG | 1 cut(s) | 707 |
| Eco53kI | GAGCTC | 4 cut(s) | 1058, 1211, 1939, 2599 |
| Eco57I | CTGAAG | 4 cut(s) | 524, 893, 2381, 3105 |
| EcoICRI | GAGCTC | 4 cut(s) | 1058, 1211, 1939, 2599 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1102, 2803 |
| EcoRI | GAATTC | 2 cut(s) | 1089, 1695 |
| EcoRII | CCWGG | 3 cut(s) | 5, 529, 2011 |
| EcoT14I | CCWWGG | 3 cut(s) | 927, 1827, 2003 |
| EcoT22I | ATGCAT | 3 cut(s) | 516, 2387, 2865 |
| EcoT38I | GRGCYC | 4 cut(s) | 1060, 1213, 1941, 2601 |
| ErhI | CCWWGG | 3 cut(s) | 927, 1827, 2003 |
| Esp3I | CGTCTC | 1 cut(s) | 2666 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1770, 1802, 2497, 2529 |
| FaqI | GGGAC | 4 cut(s) | 1115, 1409, 2758, 2917 |
| FbaI | TGATCA | 1 cut(s) | 2566 |
| FblI | GTMKAC | 1 cut(s) | 895 |
| Fnu4HI | GCNGC | 6 cut(s) | 11, 849, 1565, 2484, 2606, 3081 |
| FokI | GGATG | 9 cut(s) | 412, 419, 501, 551, 1253, 2518, 2603, 2638, 2795 |
| FriOI | GRGCYC | 4 cut(s) | 1060, 1213, 1941, 2601 |
| Fsp4HI | GCNGC | 6 cut(s) | 11, 849, 1565, 2484, 2606, 3081 |
| FspBI | CTAG | 3 cut(s) | 167, 1445, 2271 |
| GlaI | GCGC | 1 cut(s) | 2360 |
| GluI | GCNGC | 6 cut(s) | 11, 849, 1565, 2484, 2606, 3081 |
| GsaI | CCCAGC | 3 cut(s) | 1531, 1557, 2919 |
| GsuI | CTGGAG | 3 cut(s) | 411, 2039, 2585 |
| HaeII | RGCGCY | 1 cut(s) | 2362 |
| HaeIII | GGCC | 9 cut(s) | 709, 926, 1835, 2486, 2804, 2957, 2990, 3238, 3274 |
| HapII | CCGG | 5 cut(s) | 536, 782, 1651, 2434, 2535 |
| HgaI | GACGC | 1 cut(s) | 31 |
| HhaI | GCGC | 1 cut(s) | 2361 |
| Hin1I | GRCGYC | 1 cut(s) | 2675 |
| Hin6I | GCGC | 1 cut(s) | 2359 |
| HinP1I | GCGC | 1 cut(s) | 2359 |
| HincII | GTYRAC | 1 cut(s) | 117 |
| HindII | GTYRAC | 1 cut(s) | 117 |
| HinfI | GANTC | 9 cut(s) | 294, 1765, 2054, 2158, 2278, 2453, 3058, 3106, 3142 |
| HpaII | CCGG | 5 cut(s) | 536, 782, 1651, 2434, 2535 |
| HphI | GGTGA | 4 cut(s) | 248, 596, 607, 799 |
| Hpy166II | GTNNAC | 6 cut(s) | 117, 384, 896, 1760, 2464, 3176 |
| Hpy188III | TCNNGA | 9 cut(s) | 213, 390, 833, 958, 1340, 1409, 1433, 2018, 2660 |
| Hpy8I | GTNNAC | 6 cut(s) | 117, 384, 896, 1760, 2464, 3176 |
| HpyCH4III | ACNGT | 9 cut(s) | 252, 278, 437, 1019, 1030, 1270, 1459, 1542, 2584 |
| HpyCH4IV | ACGT | 3 cut(s) | 1387, 2675, 3001 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1208, 1271, 2492, 2605, 2810, 3244 |
| HpySE526I | ACGT | 3 cut(s) | 1387, 2675, 3001 |
| Hsp92I | GRCGYC | 1 cut(s) | 2675 |
| HspAI | GCGC | 1 cut(s) | 2359 |
| KflI | GGGWCCC | 1 cut(s) | 1102 |
| Ksp22I | TGATCA | 1 cut(s) | 2566 |
| LguI | GCTCTTC | 1 cut(s) | 1788 |
| Lsp1109I | GCAGC | 4 cut(s) | 860, 1551, 2592, 3067 |
| LweI | GCATC | 4 cut(s) | 523, 1252, 2176, 2331 |
| MaeI | CTAG | 3 cut(s) | 167, 1445, 2271 |
| MaeII | ACGT | 3 cut(s) | 1387, 2675, 3001 |
| MaeIII | GTNAC | 9 cut(s) | 19, 217, 694, 1030, 1047, 1221, 1620, 2106, 2237 |
| MfeI | CAATTG | 1 cut(s) | 1626 |
| MflI | RGATCY | 3 cut(s) | 1916, 1999, 3124 |
| MhlI | GDGCHC | 5 cut(s) | 1060, 1213, 1941, 2601, 3178 |
| MlsI | TGGCCA | 2 cut(s) | 926, 2957 |
| MluNI | TGGCCA | 2 cut(s) | 926, 2957 |
| MlyI | GAGTC | 1 cut(s) | 1774 |
| Mox20I | TGGCCA | 2 cut(s) | 926, 2957 |
| Mph1103I | ATGCAT | 3 cut(s) | 516, 2387, 2865 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1299, 3105 |
| MscI | TGGCCA | 2 cut(s) | 926, 2957 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2390 |
| Msp20I | TGGCCA | 2 cut(s) | 926, 2957 |
| MspA1I | CMGCKG | 1 cut(s) | 2605 |
| MspI | CCGG | 5 cut(s) | 536, 782, 1651, 2434, 2535 |
| MspR9I | CCNGG | 3 cut(s) | 7, 531, 2013 |
| MunI | CAATTG | 1 cut(s) | 1626 |
| Mva1269I | GAATGC | 1 cut(s) | 1442 |
| MvaI | CCWGG | 3 cut(s) | 7, 531, 2013 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1208, 1271, 2492, 2605, 2810, 3244 |
| NheI | GCTAGC | 1 cut(s) | 2270 |
| NlaIV | GGNNCC | 6 cut(s) | 1103, 1104, 2010, 2102, 2438, 2805 |
| NmuCI | GTSAC | 3 cut(s) | 19, 1221, 2106 |
| NsiI | ATGCAT | 3 cut(s) | 516, 2387, 2865 |
| NspI | RCATGY | 2 cut(s) | 3152, 3182 |
| NspV | TTCGAA | 2 cut(s) | 746, 3154 |
| PagI | TCATGA | 1 cut(s) | 1432 |
| PaqCI | CACCTGC | 1 cut(s) | 3040 |
| PceI | AGGCCT | 1 cut(s) | 3274 |
| PciI | ACATGT | 1 cut(s) | 3148 |
| PciSI | GCTCTTC | 1 cut(s) | 1788 |
| PctI | GAATGC | 1 cut(s) | 1442 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1299, 3105 |
| PfeI | GAWTC | 8 cut(s) | 294, 2054, 2158, 2278, 2453, 3058, 3106, 3142 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1085, 2813 |
| PinAI | ACCGGT | 1 cut(s) | 1650 |
| PkrI | GCNGC | 6 cut(s) | 12, 850, 1566, 2485, 2607, 3082 |
| PleI | GAGTC | 1 cut(s) | 1773 |
| PpsI | GAGTC | 1 cut(s) | 1773 |
| Ppu21I | YACGTR | 1 cut(s) | 1388 |
| PpuMI | RGGWCCY | 1 cut(s) | 1102 |
| PscI | ACATGT | 1 cut(s) | 3148 |
| PshBI | ATTAAT | 1 cut(s) | 827 |
| PsiI | TTATAA | 1 cut(s) | 2822 |
| Psp124BI | GAGCTC | 4 cut(s) | 1060, 1213, 1941, 2601 |
| Psp5II | RGGWCCY | 1 cut(s) | 1102 |
| Psp6I | CCWGG | 3 cut(s) | 5, 529, 2011 |
| PspFI | CCCAGC | 3 cut(s) | 1527, 1553, 2915 |
| PspGI | CCWGG | 3 cut(s) | 5, 529, 2011 |
| PspN4I | GGNNCC | 6 cut(s) | 1103, 1104, 2010, 2102, 2438, 2805 |
| PspPI | GGNCC | 5 cut(s) | 533, 1102, 1834, 2803, 3236 |
| PspPPI | RGGWCCY | 1 cut(s) | 1102 |
| PstI | CTGCAG | 1 cut(s) | 15 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2813 |
| PsuI | RGATCY | 3 cut(s) | 1916, 1999, 3124 |
| PvuII | CAGCTG | 1 cut(s) | 2605 |
| RsaI | GTAC | 5 cut(s) | 135, 1386, 1492, 2463, 2668 |
| RsaNI | GTAC | 5 cut(s) | 134, 1385, 1491, 2462, 2667 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2390 |
| SacI | GAGCTC | 4 cut(s) | 1060, 1213, 1941, 2601 |
| SapI | GCTCTTC | 1 cut(s) | 1788 |
| SatI | GCNGC | 6 cut(s) | 11, 849, 1565, 2484, 2606, 3081 |
| Sau96I | GGNCC | 5 cut(s) | 533, 1102, 1834, 2803, 3236 |
| ScaI | AGTACT | 1 cut(s) | 2668 |
| SchI | GAGTC | 1 cut(s) | 1774 |
| ScrFI | CCNGG | 3 cut(s) | 7, 531, 2013 |
| SduI | GDGCHC | 5 cut(s) | 1060, 1213, 1941, 2601, 3178 |
| SfaNI | GCATC | 4 cut(s) | 523, 1252, 2176, 2331 |
| SfcI | CTRYAG | 1 cut(s) | 11 |
| SfuI | TTCGAA | 2 cut(s) | 746, 3154 |
| SinI | GGWCC | 2 cut(s) | 533, 1102 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2390 |
| SmlI | CTYRAG | 2 cut(s) | 607, 1584 |
| SmoI | CTYRAG | 2 cut(s) | 607, 1584 |
| SseBI | AGGCCT | 1 cut(s) | 3274 |
| SsiI | CCGC | 5 cut(s) | 1238, 1804, 2483, 2495, 2588 |
| SspI | AATATT | 3 cut(s) | 577, 841, 1667 |
| SspMI | CTAG | 3 cut(s) | 167, 1445, 2271 |
| SstI | GAGCTC | 4 cut(s) | 1060, 1213, 1941, 2601 |
| StuI | AGGCCT | 1 cut(s) | 3274 |
| StyD4I | CCNGG | 3 cut(s) | 5, 529, 2011 |
| StyI | CCWWGG | 3 cut(s) | 927, 1827, 2003 |
| TaaI | ACNGT | 9 cut(s) | 252, 278, 437, 1019, 1030, 1270, 1459, 1542, 2584 |
| TaiI | ACGT | 3 cut(s) | 1390, 2678, 3004 |
| TaqI | TCGA | 7 cut(s) | 322, 481, 746, 1957, 2052, 2641, 3154 |
| TaqII | GACCGA | 1 cut(s) | 1518 |
| TatI | WGTACW | 3 cut(s) | 1490, 2461, 2666 |
| TauI | GCSGC | 1 cut(s) | 2486 |
| TfiI | GAWTC | 8 cut(s) | 294, 2054, 2158, 2278, 2453, 3058, 3106, 3142 |
| TscAI | CASTG | 3 cut(s) | 1047, 1462, 2405 |
| TseFI | GTSAC | 3 cut(s) | 19, 1221, 2106 |
| TseI | GCWGC | 5 cut(s) | 10, 848, 1564, 2605, 3080 |
| Tsp45I | GTSAC | 3 cut(s) | 19, 1221, 2106 |
| TspGWI | ACGGA | 2 cut(s) | 1050, 1745 |
| TspRI | CASTG | 3 cut(s) | 1047, 1462, 2405 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1085, 2813 |
| VneI | GTGCAC | 1 cut(s) | 3174 |
| VpaK11BI | GGWCC | 2 cut(s) | 533, 1102 |
| VspI | ATTAAT | 1 cut(s) | 827 |
| XapI | RAATTY | 8 cut(s) | 53, 701, 1089, 1296, 1305, 1695, 1822, 2023 |
| XceI | RCATGY | 2 cut(s) | 3152, 3182 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1625 |
| XmiI | GTMKAC | 1 cut(s) | 895 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1299, 3105 |
| XspI | CTAG | 3 cut(s) | 167, 1445, 2271 |
| ZraI | GACGTC | 1 cut(s) | 2676 |
| ZrmI | AGTACT | 1 cut(s) | 2668 |
| Zsp2I | ATGCAT | 3 cut(s) | 516, 2387, 2865 |