Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

8331657 .. 8340440

Gene Structure 8784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08371.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATAAGATTGTTGGTGTCTTGGGGGAAGACAATAGATGGAGAACTGGTTATGTTAATGTTGGATGTGTCTTTGTGGACTATTTCAGGCAACTTTTTACTACAGGAGGGTCTGATATGAGTCATGGGATTTTTGGGGAGGTTGCTGGTAGAGTAAAGGGACTAGGATGGGCGTTTTCTGGGTATCAGGAGCTTTCAATCCTCGTCTTTCGGGTTCCTAGCTCCAATGATCGGCGATCTATGGTTCCGGCGAGTGCTTCAGGTTTTGTGTTTTGGTTGATGCATGTTGATAACTTGGAGTTTGAAGTATTCGGGGAAGCTATGGCAAAATTCAAGCAAGTATTTCTGGCAGGTCGCCGGAATCCCGGTAGGAATTCAGACGAGGCAACAGTTCCGGCAGAATTCGTGAAGCAAGATATTGGTGGAAAAGGTATACATTGGAGGAAGTGGGATGCACTTTGTGTGTCGAAAGGGGAAGGTGGATTGGGTTTTAGGGAGTTTCAGTGCTTTAATCAAGCATTGATAAGGAAAATTGGTTGGAGGCTGATTCAAGATGAGGAGTCTTTGGTTGGTCGAATGTTGAAGGCTAAATACTACCCGAATAGTTCTTTTATGGAGGCTGAAATTGGGAGGAATCCTTCCAGTATATGGAGGGTTGTGATGTGGGGTAAACAACTTCTAACCAAAGGACTTCGGTGGAGGATAAGCAATGGGACTGATATCCAGGTCTTTCAAGACCCTTGGGTGCCTGGAATACCTGAATTTAAAATTGCATGGAAGAATGGCTGTGATTGGAATATGAGAGTGAATGAGCTGATTTCAGTGTCTGGTTTGTGGGATATGTATAAGCTAGAGCAAGTAGCTACAACGCAAGAAGTGGAGGTTGTGCTTAGCATCCCTATTGTACAATCAACCAAAGAAGAAAAAAAAAGAAAGTCATATAACATAGATGACATTAGCCACAGTGACACATCCGCGTCAAAAACAAACGAACTTGTATTTGATGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3

Protein Analysis

338

Amino Acids

38.27

Weight (kDa)

8.24

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	745
AccB7I	CCANNNNNTGG	1 cut(s)	648
AccI	GTMKAC	1 cut(s)	433
AccII	CGCG	1 cut(s)	977
AciI	CCGC	1 cut(s)	975
AcsI	RAATTY	4 cut(s)	329, 373, 401, 761
AcuI	CTGAAG	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	906
AfiI	CCNNNNNNNGG	2 cut(s)	231, 648
AgsI	TTSAA	6 cut(s)	198, 305, 334, 551, 583, 734
AjnI	CCWGG	2 cut(s)	723, 748
AluBI	AGCT	6 cut(s)	193, 222, 320, 814, 850, 863
AluI	AGCT	6 cut(s)	193, 222, 320, 814, 850, 863
AlwNI	CAGNNNCTG	1 cut(s)	827
ApoI	RAATTY	4 cut(s)	329, 373, 401, 761
AsuC2I	CCSGG	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	745
BarI	GAAGNNNNNNTAC	2 cut(s)	575, 607
BbsI	GAAGAC	1 cut(s)	36
BccI	CCATC	2 cut(s)	33, 162
BciT130I	CCWGG	2 cut(s)	725, 750
BcnI	CCSGG	1 cut(s)	366
BfaI	CTAG	3 cut(s)	164, 219, 851
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	890
Bme1390I	CCNGG	3 cut(s)	366, 725, 750
BmiI	GGNNCC	3 cut(s)	216, 246, 747
BmrFI	CCNGG	3 cut(s)	366, 725, 750
BmsI	GCATC	4 cut(s)	270, 442, 903, 994
BpiI	GAAGAC	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	890
BpuMI	CCSGG	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	740
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 488, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 648
Bse1I	ACTGG	2 cut(s)	52, 642
Bse3DI	GCAATG	1 cut(s)	715
BseBI	CCWGG	2 cut(s)	725, 750
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	5 cut(s)	71, 173, 457, 894, 971
BseLI	CCNNNNNNNGG	2 cut(s)	231, 648
BseMI	GCAATG	1 cut(s)	715
BseNI	ACTGG	2 cut(s)	52, 642
BseRI	GAGGAG	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	977
BshNI	GGYRCC	1 cut(s)	745
BsiSI	CCGG	4 cut(s)	248, 358, 366, 395
BslFI	GGGAC	2 cut(s)	174, 727
BslI	CCNNNNNNNGG	2 cut(s)	231, 648
BsmFI	GGGAC	2 cut(s)	174, 727
Bsp1407I	TGTACA	1 cut(s)	904
Bsp143I	GATC	2 cut(s)	229, 236
Bsp1720I	GCTNAGC	1 cut(s)	890
BspACI	CCGC	1 cut(s)	975
BspFNI	CGCG	1 cut(s)	977
BspLI	GGNNCC	3 cut(s)	216, 246, 747
BspMI	ACCTGC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	745
BsrDI	GCAATG	1 cut(s)	715
BsrGI	TGTACA	1 cut(s)	904
BsrI	ACTGG	2 cut(s)	52, 642
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	2 cut(s)	229, 236
BssNAI	GTATAC	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	740
Bst1107I	GTATAC	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	725, 750
Bst4CI	ACNGT	2 cut(s)	391, 965
BstAUI	TGTACA	1 cut(s)	904
BstDEI	CTNAG	1 cut(s)	890
BstF5I	GGATG	5 cut(s)	71, 173, 457, 894, 971
BstFNI	CGCG	1 cut(s)	977
BstKTI	GATC	2 cut(s)	232, 239
BstMBI	GATC	2 cut(s)	229, 236
BstNI	CCWGG	2 cut(s)	725, 750
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	364, 723, 748
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	977
BstV2I	GAAGAC	1 cut(s)	36
BstZ17I	GTATAC	1 cut(s)	434
BtsCI	GGATG	5 cut(s)	71, 173, 457, 894, 971
BtsIMutI	CAGTG	3 cut(s)	509, 828, 970
BveI	ACCTGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	827
CseI	GACGC	1 cut(s)	966
Csp6I	GTAC	1 cut(s)	905
CviAII	CATG	3 cut(s)	125, 284, 774
CviQI	GTAC	1 cut(s)	905
DdeI	CTNAG	1 cut(s)	890
DpnI	GATC	2 cut(s)	231, 238
DpnII	GATC	2 cut(s)	229, 236
DraI	TTTAAA	1 cut(s)	766
DraIII	CACNNNGTG	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	740
Eco32I	GATATC	1 cut(s)	721
Eco57I	CTGAAG	1 cut(s)	243
EcoRI	GAATTC	2 cut(s)	373, 401
EcoRII	CCWGG	2 cut(s)	723, 748
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	740
EcoT22I	ATGCAT	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	3 cut(s)	128, 287, 777
FaqI	GGGAC	2 cut(s)	174, 727
FatI	CATG	3 cut(s)	124, 283, 773
FblI	GTMKAC	1 cut(s)	433
FokI	GGATG	5 cut(s)	78, 180, 464, 881, 958
FspBI	CTAG	3 cut(s)	164, 219, 851
HapII	CCGG	4 cut(s)	248, 358, 366, 395
HgaI	GACGC	1 cut(s)	966
Hin1II	CATG	3 cut(s)	128, 287, 777
HinfI	GANTC	5 cut(s)	121, 361, 547, 560, 634
HpaII	CCGG	4 cut(s)	248, 358, 366, 395
Hpy166II	GTNNAC	3 cut(s)	79, 434, 671
Hpy188I	TCNGA	2 cut(s)	115, 379
Hpy188III	TCNNGA	4 cut(s)	188, 406, 551, 734
Hpy8I	GTNNAC	3 cut(s)	79, 434, 671
HpyAV	CCTTC	3 cut(s)	470, 577, 648
HpyCH4III	ACNGT	2 cut(s)	391, 965
HpyCH4V	TGCA	4 cut(s)	283, 455, 773, 1007
HpyF3I	CTNAG	1 cut(s)	890
Hsp92II	CATG	3 cut(s)	128, 287, 777
Kzo9I	GATC	2 cut(s)	229, 236
LmnI	GCTCC	2 cut(s)	190, 227
LweI	GCATC	4 cut(s)	270, 442, 903, 994
MaeI	CTAG	3 cut(s)	164, 219, 851
MaeIII	GTNAC	1 cut(s)	965
MalI	GATC	2 cut(s)	231, 238
MboI	GATC	2 cut(s)	229, 236
MboII	GAAGA	3 cut(s)	41, 790, 932
MluCI	AATT	7 cut(s)	329, 373, 401, 531, 624, 761, 768
MlyI	GAGTC	2 cut(s)	130, 569
MmeI	TCCRAC	2 cut(s)	43, 518
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	4 cut(s)	57, 510, 765, 1012
MspI	CCGG	4 cut(s)	248, 358, 366, 395
MspR9I	CCNGG	3 cut(s)	366, 725, 750
MvaI	CCWGG	2 cut(s)	725, 750
MvnI	CGCG	1 cut(s)	977
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	229, 236
NlaIII	CATG	3 cut(s)	128, 287, 777
NlaIV	GGNNCC	3 cut(s)	216, 246, 747
NmuCI	GTSAC	1 cut(s)	965
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	287
PfeI	GAWTC	3 cut(s)	361, 547, 634
PflMI	CCANNNNNTGG	1 cut(s)	648
PleI	GAGTC	2 cut(s)	129, 568
PpsI	GAGTC	2 cut(s)	129, 568
Psp6I	CCWGG	2 cut(s)	723, 748
PspGI	CCWGG	2 cut(s)	723, 748
PspN4I	GGNNCC	3 cut(s)	216, 246, 747
PstNI	CAGNNNCTG	1 cut(s)	827
RsaI	GTAC	1 cut(s)	906
RsaNI	GTAC	1 cut(s)	905
SaqAI	TTAA	4 cut(s)	57, 510, 765, 1012
Sau3AI	GATC	2 cut(s)	229, 236
SchI	GAGTC	2 cut(s)	130, 569
ScrFI	CCNGG	3 cut(s)	366, 725, 750
SfaNI	GCATC	4 cut(s)	270, 442, 903, 994
SfcI	CTRYAG	1 cut(s)	102
Sse9I	AATT	7 cut(s)	329, 373, 401, 531, 624, 761, 768
SsiI	CCGC	1 cut(s)	975
SspMI	CTAG	3 cut(s)	164, 219, 851
StyD4I	CCNGG	3 cut(s)	364, 723, 748
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	2 cut(s)	391, 965
TaqI	TCGA	2 cut(s)	467, 574
TasI	AATT	7 cut(s)	329, 373, 401, 531, 624, 761, 768
TatI	WGTACW	1 cut(s)	904
TfiI	GAWTC	3 cut(s)	361, 547, 634
Tru1I	TTAA	4 cut(s)	57, 510, 765, 1012
Tru9I	TTAA	4 cut(s)	57, 510, 765, 1012
TscAI	CASTG	3 cut(s)	509, 828, 970
TseFI	GTSAC	1 cut(s)	965
Tsp45I	GTSAC	1 cut(s)	965
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	509, 828, 970
Van91I	CCANNNNNTGG	1 cut(s)	648
XapI	RAATTY	4 cut(s)	329, 373, 401, 761
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	3 cut(s)	164, 219, 851
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.