ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 1217, 1238 |
| AccB1I | GGYRCC | 1 cut(s) | 2773 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2024 |
| AccBSI | CCGCTC | 1 cut(s) | 2308 |
| AccI | GTMKAC | 4 cut(s) | 199, 1744, 1960, 2887 |
| AccII | CGCG | 1 cut(s) | 2730 |
| AciI | CCGC | 6 cut(s) | 532, 561, 926, 2308, 2317, 3013 |
| AclI | AACGTT | 2 cut(s) | 1345, 2113 |
| AclWI | GGATC | 4 cut(s) | 1159, 1798, 2861, 2874 |
| AcuI | CTGAAG | 3 cut(s) | 441, 729, 2181 |
| AdeI | CACNNNGTG | 1 cut(s) | 2024 |
| AfaI | GTAC | 4 cut(s) | 270, 1259, 3153, 3223 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 300, 1022, 1402, 1437, 1842, 2024 |
| AflII | CTTAAG | 1 cut(s) | 298 |
| AflIII | ACRYGT | 1 cut(s) | 676 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1533 |
| AhlI | ACTAGT | 1 cut(s) | 3272 |
| AjnI | CCWGG | 3 cut(s) | 1412, 1954, 2662 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2266, 2298 |
| AluBI | AGCT | 9 cut(s) | 853, 1562, 2069, 2120, 2393, 2415, 2443, 2582, 3182 |
| AluI | AGCT | 9 cut(s) | 853, 1562, 2069, 2120, 2393, 2415, 2443, 2582, 3182 |
| Alw21I | GWGCWC | 3 cut(s) | 283, 445, 1862 |
| Alw26I | GTCTC | 9 cut(s) | 13, 561, 946, 1281, 1322, 1520, 1941, 2093, 2181 |
| Alw44I | GTGCAC | 2 cut(s) | 279, 1858 |
| AlwI | GGATC | 4 cut(s) | 1159, 1798, 2861, 2874 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1475 |
| Ama87I | CYCGRG | 4 cut(s) | 564, 1350, 1827, 2829 |
| AoxI | GGCC | 6 cut(s) | 694, 1662, 1844, 2015, 2217, 2649 |
| ApaI | GGGCCC | 1 cut(s) | 2653 |
| ApaLI | GTGCAC | 2 cut(s) | 279, 1858 |
| ApeKI | GCWGC | 6 cut(s) | 529, 853, 1559, 2254, 3179, 3289 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 841 |
| AspLEI | GCGC | 3 cut(s) | 1218, 1239, 2730 |
| AspS9I | GGNCC | 7 cut(s) | 884, 1488, 1663, 1845, 2015, 2649, 2650 |
| AsuII | TTCGAA | 2 cut(s) | 2557, 3308 |
| AvaI | CYCGRG | 4 cut(s) | 564, 1350, 1827, 2829 |
| AvaII | GGWCC | 2 cut(s) | 884, 1488 |
| AxyI | CCTNAGG | 1 cut(s) | 95 |
| BaeGI | GKGCMC | 3 cut(s) | 283, 1862, 2653 |
| BamHI | GGATCC | 1 cut(s) | 2866 |
| BanI | GGYRCC | 1 cut(s) | 2773 |
| BanII | GRGCYC | 1 cut(s) | 2653 |
| BauI | CACGAG | 2 cut(s) | 1397, 3183 |
| BbsI | GAAGAC | 3 cut(s) | 522, 868, 3259 |
| Bbv12I | GWGCWC | 3 cut(s) | 283, 445, 1862 |
| BbvCI | CCTCAGC | 1 cut(s) | 3002 |
| BbvI | GCAGC | 6 cut(s) | 541, 840, 1571, 2241, 3191, 3301 |
| BciT130I | CCWGG | 3 cut(s) | 1414, 1956, 2664 |
| BciVI | GTATCC | 1 cut(s) | 1662 |
| BclI | TGATCA | 2 cut(s) | 1156, 2844 |
| BcoDI | GTCTC | 9 cut(s) | 13, 561, 946, 1281, 1322, 1520, 1941, 2093, 2181 |
| BcuI | ACTAGT | 1 cut(s) | 3272 |
| BfaI | CTAG | 6 cut(s) | 633, 1139, 1386, 1668, 2976, 3273 |
| BfmI | CTRYAG | 2 cut(s) | 1244, 3177 |
| BfrI | CTTAAG | 1 cut(s) | 298 |
| BfuI | GTATCC | 1 cut(s) | 1662 |
| BglII | AGATCT | 1 cut(s) | 1099 |
| BisI | GCNGC | 7 cut(s) | 530, 533, 854, 1560, 2255, 3180, 3290 |
| BlsI | GCNGC | 7 cut(s) | 531, 534, 855, 1561, 2256, 3181, 3291 |
| BmcAI | AGTACT | 1 cut(s) | 3153 |
| Bme1390I | CCNGG | 3 cut(s) | 1414, 1956, 2664 |
| Bme18I | GGWCC | 2 cut(s) | 884, 1488 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1533 |
| BmeT110I | CYCGRG | 4 cut(s) | 564, 1350, 1827, 2829 |
| BmgT120I | GGNCC | 7 cut(s) | 884, 1488, 1663, 1845, 2015, 2649, 2650 |
| BmiI | GGNNCC | 8 cut(s) | 92, 292, 469, 1489, 1665, 2651, 2775, 2868 |
| BmrFI | CCNGG | 3 cut(s) | 1414, 1956, 2664 |
| BmrI | ACTGGG | 1 cut(s) | 2872 |
| BmsI | GCATC | 8 cut(s) | 778, 1726, 2097, 2649, 2863, 3006, 3149, 3270 |
| BmuI | ACTGGG | 1 cut(s) | 2872 |
| BpiI | GAAGAC | 3 cut(s) | 522, 868, 3259 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3072, 3104 |
| BpmI | CTGGAG | 1 cut(s) | 2524 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3002 |
| Bpu14I | TTCGAA | 2 cut(s) | 2557, 3308 |
| BpuEI | CTTGAG | 1 cut(s) | 2373 |
| Bsa29I | ATCGAT | 2 cut(s) | 1111, 1900 |
| BsaAI | YACGTR | 1 cut(s) | 992 |
| BsaBI | GATNNNNATC | 2 cut(s) | 116, 1782 |
| BsaI | GGTCTC | 1 cut(s) | 1520 |
| BsaJI | CCNNGG | 7 cut(s) | 326, 871, 887, 1413, 1639, 1659, 2248 |
| BsaWI | WCCGGW | 1 cut(s) | 1918 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1319, 1349, 2791, 2821 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 300, 1022, 1402, 1437, 1842, 2024 |
| Bse1I | ACTGG | 4 cut(s) | 1712, 2171, 2507, 2867 |
| Bse21I | CCTNAGG | 1 cut(s) | 95 |
| Bse3DI | GCAATG | 2 cut(s) | 1218, 2883 |
| Bse8I | GATNNNNATC | 2 cut(s) | 116, 1782 |
| BseBI | CCWGG | 3 cut(s) | 1414, 1956, 2664 |
| BseCI | ATCGAT | 2 cut(s) | 1111, 1900 |
| BseDI | CCNNGG | 7 cut(s) | 326, 871, 887, 1413, 1639, 1659, 2248 |
| BseGI | GGATG | 9 cut(s) | 268, 439, 657, 690, 725, 817, 1048, 2686, 3021 |
| BseJI | GATNNNNATC | 2 cut(s) | 116, 1782 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 300, 1022, 1402, 1437, 1842, 2024 |
| BseMI | GCAATG | 2 cut(s) | 1218, 2883 |
| BseMII | CTCAG | 5 cut(s) | 162, 1538, 1923, 2896, 2993 |
| BseNI | ACTGG | 4 cut(s) | 1712, 2171, 2507, 2867 |
| BseRI | GAGGAG | 5 cut(s) | 390, 432, 453, 1340, 2796 |
| BseSI | GKGCMC | 3 cut(s) | 283, 1862, 2653 |
| BseXI | GCAGC | 6 cut(s) | 541, 840, 1571, 2241, 3191, 3301 |
| BsgI | GTGCAG | 1 cut(s) | 851 |
| Bsh1236I | CGCG | 1 cut(s) | 2730 |
| BshFI | GGCC | 6 cut(s) | 696, 1664, 1846, 2017, 2219, 2651 |
| BshNI | GGYRCC | 1 cut(s) | 2773 |
| BshVI | ATCGAT | 2 cut(s) | 1111, 1900 |
| BsiHKAI | GWGCWC | 3 cut(s) | 283, 445, 1862 |
| BsiHKCI | CYCGRG | 4 cut(s) | 564, 1350, 1827, 2829 |
| BsiSI | CCGG | 1 cut(s) | 1919 |
| BslFI | GGGAC | 5 cut(s) | 154, 246, 2145, 2381, 3182 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 300, 1022, 1402, 1437, 1842, 2024 |
| BsmAI | GTCTC | 9 cut(s) | 13, 561, 946, 1281, 1322, 1520, 1941, 2093, 2181 |
| BsmBI | CGTCTC | 1 cut(s) | 561 |
| BsmFI | GGGAC | 5 cut(s) | 154, 246, 2145, 2381, 3182 |
| BsmI | GAATGC | 2 cut(s) | 1686, 2430 |
| BsnI | GGCC | 6 cut(s) | 696, 1664, 1846, 2017, 2219, 2651 |
| Bso31I | GGTCTC | 1 cut(s) | 1520 |
| BsoBI | CYCGRG | 4 cut(s) | 564, 1350, 1827, 2829 |
| Bsp119I | TTCGAA | 2 cut(s) | 2557, 3308 |
| Bsp120I | GGGCCC | 1 cut(s) | 2649 |
| Bsp1286I | GDGCHC | 4 cut(s) | 283, 445, 1862, 2653 |
| Bsp1407I | TGTACA | 1 cut(s) | 3221 |
| Bsp143I | GATC | 7 cut(s) | 1099, 1151, 1156, 1803, 2844, 2866, 2947 |
| BspACI | CCGC | 6 cut(s) | 532, 561, 926, 2308, 2317, 3013 |
| BspANI | GGCC | 6 cut(s) | 696, 1664, 1846, 2017, 2219, 2651 |
| BspCNI | CTCAG | 5 cut(s) | 163, 1537, 1924, 2895, 2994 |
| BspDI | ATCGAT | 2 cut(s) | 1111, 1900 |
| BspFNI | CGCG | 1 cut(s) | 2730 |
| BspHI | TCATGA | 1 cut(s) | 310 |
| BspLI | GGNNCC | 8 cut(s) | 92, 292, 469, 1489, 1665, 2651, 2775, 2868 |
| BspMAI | CTGCAG | 2 cut(s) | 1248, 3181 |
| BspPI | GGATC | 4 cut(s) | 1159, 1798, 2861, 2874 |
| BspQI | GCTCTTC | 2 cut(s) | 924, 2232 |
| BspT104I | TTCGAA | 2 cut(s) | 2557, 3308 |
| BspT107I | GGYRCC | 1 cut(s) | 2773 |
| BspTI | CTTAAG | 1 cut(s) | 298 |
| BspTNI | GGTCTC | 1 cut(s) | 1520 |
| BsrBI | CCGCTC | 1 cut(s) | 2308 |
| BsrDI | GCAATG | 2 cut(s) | 1218, 2883 |
| BsrGI | TGTACA | 1 cut(s) | 3221 |
| BsrI | ACTGG | 4 cut(s) | 1712, 2171, 2507, 2867 |
| BssECI | CCNNGG | 7 cut(s) | 326, 871, 887, 1413, 1639, 1659, 2248 |
| BssMI | GATC | 7 cut(s) | 1099, 1151, 1156, 1803, 2844, 2866, 2947 |
| BssNAI | GTATAC | 1 cut(s) | 2888 |
| BssSI | CACGAG | 2 cut(s) | 1397, 3183 |
| BssT1I | CCWWGG | 4 cut(s) | 326, 1639, 1659, 2248 |
| Bst1107I | GTATAC | 1 cut(s) | 2888 |
| Bst2BI | CACGAG | 2 cut(s) | 1397, 3183 |
| Bst2UI | CCWGG | 3 cut(s) | 1414, 1956, 2664 |
| Bst6I | CTCTTC | 3 cut(s) | 924, 1523, 2232 |
| BstAFI | CTTAAG | 1 cut(s) | 298 |
| BstAUI | TGTACA | 1 cut(s) | 3221 |
| BstBAI | YACGTR | 1 cut(s) | 992 |
| BstBI | TTCGAA | 2 cut(s) | 2557, 3308 |
| BstC8I | GCNNGC | 4 cut(s) | 348, 1635, 1686, 2359 |
| BstDEI | CTNAG | 9 cut(s) | 95, 171, 1524, 1884, 1932, 2212, 2532, 2882, 3002 |
| BstDSI | CCRYGG | 2 cut(s) | 871, 887 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 298 |
| BstF5I | GGATG | 9 cut(s) | 268, 439, 657, 690, 725, 817, 1048, 2686, 3021 |
| BstFNI | CGCG | 1 cut(s) | 2730 |
| BstHHI | GCGC | 3 cut(s) | 1218, 1239, 2730 |
| BstKTI | GATC | 7 cut(s) | 1102, 1154, 1159, 1806, 2847, 2869, 2950 |
| BstMAI | GTCTC | 9 cut(s) | 13, 561, 946, 1281, 1322, 1520, 1941, 2093, 2181 |
| BstMBI | GATC | 7 cut(s) | 1099, 1151, 1156, 1803, 2844, 2866, 2947 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1243, 2314, 2550, 2588, 3289 |
| BstNI | CCWGG | 3 cut(s) | 1414, 1956, 2664 |
| BstNSI | RCATGY | 3 cut(s) | 256, 646, 1743 |
| BstSCI | CCNGG | 3 cut(s) | 1412, 1954, 2662 |
| BstSFI | CTRYAG | 2 cut(s) | 1244, 3177 |
| BstSLI | GKGCMC | 3 cut(s) | 283, 1862, 2653 |
| BstUI | CGCG | 1 cut(s) | 2730 |
| BstV1I | GCAGC | 6 cut(s) | 541, 840, 1571, 2241, 3191, 3301 |
| BstV2I | GAAGAC | 3 cut(s) | 522, 868, 3259 |
| BstX2I | RGATCY | 3 cut(s) | 1099, 1151, 2866 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 135, 1038 |
| BstYI | RGATCY | 3 cut(s) | 1099, 1151, 2866 |
| BstZ17I | GTATAC | 1 cut(s) | 2888 |
| Bsu15I | ATCGAT | 2 cut(s) | 1111, 1900 |
| Bsu36I | CCTNAGG | 1 cut(s) | 95 |
| BsuI | GTATCC | 1 cut(s) | 1662 |
| BsuRI | GGCC | 6 cut(s) | 696, 1664, 1846, 2017, 2219, 2651 |
| BsuTUI | ATCGAT | 2 cut(s) | 1111, 1900 |
| BtgI | CCRYGG | 2 cut(s) | 871, 887 |
| BtsCI | GGATG | 9 cut(s) | 268, 439, 657, 690, 725, 817, 1048, 2686, 3021 |
| BtsI | GCAGTG | 1 cut(s) | 2029 |
| BtsIMutI | CAGTG | 5 cut(s) | 1738, 2029, 2178, 2500, 2860 |
| Cac8I | GCNNGC | 4 cut(s) | 348, 1635, 1686, 2359 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1475 |
| CciI | TCATGA | 1 cut(s) | 310 |
| CfoI | GCGC | 3 cut(s) | 1218, 1239, 2730 |
| Cfr13I | GGNCC | 7 cut(s) | 884, 1488, 1663, 1845, 2015, 2649, 2650 |
| ClaI | ATCGAT | 2 cut(s) | 1111, 1900 |
| CseI | GACGC | 3 cut(s) | 94, 185, 2961 |
| Csp6I | GTAC | 4 cut(s) | 269, 1258, 3152, 3222 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 155, 190 |
| CviQI | GTAC | 4 cut(s) | 269, 1258, 3152, 3222 |
| DdeI | CTNAG | 9 cut(s) | 95, 171, 1524, 1884, 1932, 2212, 2532, 2882, 3002 |
| DpnI | GATC | 7 cut(s) | 1101, 1153, 1158, 1805, 2846, 2868, 2949 |
| DpnII | GATC | 7 cut(s) | 1099, 1151, 1156, 1803, 2844, 2866, 2947 |
| DraI | TTTAAA | 1 cut(s) | 1755 |
| DraIII | CACNNNGTG | 1 cut(s) | 2024 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1533 |
| Eam1104I | CTCTTC | 3 cut(s) | 924, 1523, 2232 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1533 |
| EarI | CTCTTC | 3 cut(s) | 924, 1523, 2232 |
| EciI | GGCGGA | 1 cut(s) | 3028 |
| Eco130I | CCWWGG | 4 cut(s) | 326, 1639, 1659, 2248 |
| Eco147I | AGGCCT | 1 cut(s) | 696 |
| Eco24I | GRGCYC | 1 cut(s) | 2653 |
| Eco31I | GGTCTC | 1 cut(s) | 1520 |
| Eco32I | GATATC | 3 cut(s) | 118, 150, 596 |
| Eco47I | GGWCC | 2 cut(s) | 884, 1488 |
| Eco57I | CTGAAG | 3 cut(s) | 441, 729, 2181 |
| Eco81I | CCTNAGG | 1 cut(s) | 95 |
| Eco88I | CYCGRG | 4 cut(s) | 564, 1350, 1827, 2829 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 298 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1663, 2649 |
| EcoRI | GAATTC | 2 cut(s) | 2496, 2623 |
| EcoRII | CCWGG | 3 cut(s) | 1412, 1954, 2662 |
| EcoRV | GATATC | 3 cut(s) | 118, 150, 596 |
| EcoT14I | CCWWGG | 4 cut(s) | 326, 1639, 1659, 2248 |
| EcoT22I | ATGCAT | 2 cut(s) | 1741, 3063 |
| EcoT38I | GRGCYC | 1 cut(s) | 2653 |
| ErhI | CCWWGG | 4 cut(s) | 326, 1639, 1659, 2248 |
| Esp3I | CGTCTC | 1 cut(s) | 561 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 268, 300 |
| FaqI | GGGAC | 5 cut(s) | 154, 246, 2145, 2381, 3182 |
| FauI | CCCGC | 1 cut(s) | 2301 |
| FauNDI | CATATG | 1 cut(s) | 2007 |
| FbaI | TGATCA | 2 cut(s) | 1156, 2844 |
| FblI | GTMKAC | 4 cut(s) | 199, 1744, 1960, 2887 |
| Fnu4HI | GCNGC | 7 cut(s) | 530, 533, 854, 1560, 2255, 3180, 3290 |
| FokI | GGATG | 9 cut(s) | 275, 446, 664, 697, 732, 804, 1055, 2693, 3028 |
| FriOI | GRGCYC | 1 cut(s) | 2653 |
| Fsp4HI | GCNGC | 7 cut(s) | 530, 533, 854, 1560, 2255, 3180, 3290 |
| FspBI | CTAG | 6 cut(s) | 633, 1139, 1386, 1668, 2976, 3273 |
| FspI | TGCGCA | 2 cut(s) | 1217, 1238 |
| GlaI | GCGC | 3 cut(s) | 1217, 1238, 2729 |
| GluI | GCNGC | 7 cut(s) | 530, 533, 854, 1560, 2255, 3180, 3290 |
| GsuI | CTGGAG | 1 cut(s) | 2524 |
| HaeIII | GGCC | 6 cut(s) | 696, 1664, 1846, 2017, 2219, 2651 |
| HapII | CCGG | 1 cut(s) | 1919 |
| HgaI | GACGC | 3 cut(s) | 94, 185, 2961 |
| HhaI | GCGC | 3 cut(s) | 1218, 1239, 2730 |
| Hin6I | GCGC | 3 cut(s) | 1216, 1237, 2728 |
| HinP1I | GCGC | 3 cut(s) | 1216, 1237, 2728 |
| HincII | GTYRAC | 2 cut(s) | 333, 1187 |
| HindII | GTYRAC | 2 cut(s) | 333, 1187 |
| HindIII | AAGCTT | 1 cut(s) | 2067 |
| HpaII | CCGG | 1 cut(s) | 1919 |
| Hpy99I | CGWCG | 2 cut(s) | 582, 590 |
| HpyAV | CCTTC | 8 cut(s) | 304, 1022, 1181, 1396, 1757, 2314, 2329, 3218 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1243, 2314, 2550, 2588, 3289 |
| HpyF3I | CTNAG | 9 cut(s) | 95, 171, 1524, 1884, 1932, 2212, 2532, 2882, 3002 |
| HspAI | GCGC | 3 cut(s) | 1216, 1237, 2728 |
| Ksp22I | TGATCA | 2 cut(s) | 1156, 2844 |
| Kzo9I | GATC | 7 cut(s) | 1099, 1151, 1156, 1803, 2844, 2866, 2947 |
| LguI | GCTCTTC | 2 cut(s) | 924, 2232 |
| LmnI | GCTCC | 7 cut(s) | 296, 440, 467, 582, 850, 1630, 2305 |
| Lsp1109I | GCAGC | 6 cut(s) | 541, 840, 1571, 2241, 3191, 3301 |
| LweI | GCATC | 8 cut(s) | 778, 1726, 2097, 2649, 2863, 3006, 3149, 3270 |
| MaeI | CTAG | 6 cut(s) | 633, 1139, 1386, 1668, 2976, 3273 |
| MalI | GATC | 7 cut(s) | 1101, 1153, 1158, 1805, 2846, 2868, 2949 |
| MbiI | CCGCTC | 1 cut(s) | 2308 |
| MboI | GATC | 7 cut(s) | 1099, 1151, 1156, 1803, 2844, 2866, 2947 |
| MfeI | CAATTG | 2 cut(s) | 217, 2126 |
| MflI | RGATCY | 3 cut(s) | 1099, 1151, 2866 |
| MhlI | GDGCHC | 4 cut(s) | 283, 445, 1862, 2653 |
| MlyI | GAGTC | 6 cut(s) | 52, 1362, 1839, 1943, 2192, 2611 |
| MmeI | TCCRAC | 3 cut(s) | 1608, 1679, 2312 |
| Mph1103I | ATGCAT | 2 cut(s) | 1741, 3063 |
| MroXI | GAANNNNTTC | 1 cut(s) | 841 |
| MslI | CAYNNNNRTG | 5 cut(s) | 133, 257, 759, 1036, 2955 |
| MspA1I | CMGCKG | 2 cut(s) | 532, 926 |
| MspCI | CTTAAG | 1 cut(s) | 298 |
| MspI | CCGG | 1 cut(s) | 1919 |
| MspR9I | CCNGG | 3 cut(s) | 1414, 1956, 2664 |
| MunI | CAATTG | 2 cut(s) | 217, 2126 |
| Mva1269I | GAATGC | 2 cut(s) | 1686, 2430 |
| MvaI | CCWGG | 3 cut(s) | 1414, 1956, 2664 |
| MvnI | CGCG | 1 cut(s) | 2730 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1243, 2314, 2550, 2588, 3289 |
| NdeI | CATATG | 1 cut(s) | 2007 |
| NdeII | GATC | 7 cut(s) | 1099, 1151, 1156, 1803, 2844, 2866, 2947 |
| NlaIV | GGNNCC | 8 cut(s) | 92, 292, 469, 1489, 1665, 2651, 2775, 2868 |
| NmuCI | GTSAC | 6 cut(s) | 55, 799, 992, 1354, 1831, 3131 |
| NsbI | TGCGCA | 2 cut(s) | 1217, 1238 |
| NsiI | ATGCAT | 2 cut(s) | 1741, 3063 |
| NspI | RCATGY | 3 cut(s) | 256, 646, 1743 |
| NspV | TTCGAA | 2 cut(s) | 2557, 3308 |
| PaeR7I | CTCGAG | 2 cut(s) | 1350, 1827 |
| PagI | TCATGA | 1 cut(s) | 310 |
| PceI | AGGCCT | 1 cut(s) | 696 |
| PciSI | GCTCTTC | 2 cut(s) | 924, 2232 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 193 |
| PctI | GAATGC | 2 cut(s) | 1686, 2430 |
| PdmI | GAANNNNTTC | 1 cut(s) | 841 |
| PfeI | GAWTC | 8 cut(s) | 1129, 1389, 1409, 1724, 2275, 2796, 2852, 3215 |
| PflFI | GACNNNGTC | 1 cut(s) | 481 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2024 |
| PkrI | GCNGC | 7 cut(s) | 531, 534, 855, 1561, 2256, 3181, 3291 |
| PleI | GAGTC | 6 cut(s) | 52, 1361, 1838, 1942, 2192, 2611 |
| PpsI | GAGTC | 6 cut(s) | 52, 1361, 1838, 1942, 2192, 2611 |
| Ppu21I | YACGTR | 1 cut(s) | 992 |
| Psp1406I | AACGTT | 2 cut(s) | 1345, 2113 |
| Psp6I | CCWGG | 3 cut(s) | 1412, 1954, 2662 |
| PspGI | CCWGG | 3 cut(s) | 1412, 1954, 2662 |
| PspN4I | GGNNCC | 8 cut(s) | 92, 292, 469, 1489, 1665, 2651, 2775, 2868 |
| PspOMI | GGGCCC | 1 cut(s) | 2649 |
| PspPI | GGNCC | 7 cut(s) | 884, 1488, 1663, 1845, 2015, 2649, 2650 |
| PspXI | VCTCGAGB | 1 cut(s) | 1827 |
| PstI | CTGCAG | 2 cut(s) | 1248, 3181 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1475 |
| PsuI | RGATCY | 3 cut(s) | 1099, 1151, 2866 |
| PsyI | GACNNNGTC | 1 cut(s) | 481 |
| RsaI | GTAC | 4 cut(s) | 270, 1259, 3153, 3223 |
| RsaNI | GTAC | 4 cut(s) | 269, 1258, 3152, 3222 |
| RseI | CAYNNNNRTG | 5 cut(s) | 133, 257, 759, 1036, 2955 |
| SapI | GCTCTTC | 2 cut(s) | 924, 2232 |
| SatI | GCNGC | 7 cut(s) | 530, 533, 854, 1560, 2255, 3180, 3290 |
| Sau3AI | GATC | 7 cut(s) | 1099, 1151, 1156, 1803, 2844, 2866, 2947 |
| Sau96I | GGNCC | 7 cut(s) | 884, 1488, 1663, 1845, 2015, 2649, 2650 |
| ScaI | AGTACT | 1 cut(s) | 3153 |
| SchI | GAGTC | 6 cut(s) | 52, 1362, 1839, 1943, 2192, 2611 |
| ScrFI | CCNGG | 3 cut(s) | 1414, 1956, 2664 |
| SduI | GDGCHC | 4 cut(s) | 283, 445, 1862, 2653 |
| SfaNI | GCATC | 8 cut(s) | 778, 1726, 2097, 2649, 2863, 3006, 3149, 3270 |
| SfcI | CTRYAG | 2 cut(s) | 1244, 3177 |
| Sfr274I | CTCGAG | 2 cut(s) | 1350, 1827 |
| SfuI | TTCGAA | 2 cut(s) | 2557, 3308 |
| SinI | GGWCC | 2 cut(s) | 884, 1488 |
| SlaI | CTCGAG | 2 cut(s) | 1350, 1827 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 133, 257, 759, 1036, 2955 |
| SmlI | CTYRAG | 4 cut(s) | 298, 1350, 1827, 2388 |
| SmoI | CTYRAG | 4 cut(s) | 298, 1350, 1827, 2388 |
| SpeI | ACTAGT | 1 cut(s) | 3272 |
| SseBI | AGGCCT | 1 cut(s) | 696 |
| SsiI | CCGC | 6 cut(s) | 532, 561, 926, 2308, 2317, 3013 |
| SspI | AATATT | 2 cut(s) | 1201, 1483 |
| SspMI | CTAG | 6 cut(s) | 633, 1139, 1386, 1668, 2976, 3273 |
| StuI | AGGCCT | 1 cut(s) | 696 |
| StyD4I | CCNGG | 3 cut(s) | 1412, 1954, 2662 |
| StyI | CCWWGG | 4 cut(s) | 326, 1639, 1659, 2248 |
| TaqI | TCGA | 8 cut(s) | 1111, 1351, 1435, 1828, 1900, 2557, 3079, 3308 |
| TatI | WGTACW | 3 cut(s) | 268, 3151, 3221 |
| TauI | GCSGC | 1 cut(s) | 535 |
| TfiI | GAWTC | 8 cut(s) | 1129, 1389, 1409, 1724, 2275, 2796, 2852, 3215 |
| TscAI | CASTG | 5 cut(s) | 1738, 2029, 2178, 2507, 2867 |
| TseFI | GTSAC | 6 cut(s) | 55, 799, 992, 1354, 1831, 3131 |
| TseI | GCWGC | 6 cut(s) | 529, 853, 1559, 2254, 3179, 3289 |
| Tsp45I | GTSAC | 6 cut(s) | 55, 799, 992, 1354, 1831, 3131 |
| TspGWI | ACGGA | 5 cut(s) | 595, 888, 1692, 2754, 3248 |
| TspRI | CASTG | 5 cut(s) | 1738, 2029, 2178, 2507, 2867 |
| Tth111I | GACNNNGTC | 1 cut(s) | 481 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2024 |
| Vha464I | CTTAAG | 1 cut(s) | 298 |
| VneI | GTGCAC | 2 cut(s) | 279, 1858 |
| VpaK11BI | GGWCC | 2 cut(s) | 884, 1488 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 298 |
| XbaI | TCTAGA | 1 cut(s) | 1138 |
| XceI | RCATGY | 3 cut(s) | 256, 646, 1743 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 878 |
| XhoI | CTCGAG | 2 cut(s) | 1350, 1827 |
| XmiI | GTMKAC | 4 cut(s) | 199, 1744, 1960, 2887 |
| XmnI | GAANNNNTTC | 1 cut(s) | 841 |
| XspI | CTAG | 6 cut(s) | 633, 1139, 1386, 1668, 2976, 3273 |
| ZrmI | AGTACT | 1 cut(s) | 3153 |
| Zsp2I | ATGCAT | 2 cut(s) | 1741, 3063 |