ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 759 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2491 |
| Acc16I | TGCGCA | 1 cut(s) | 691 |
| Acc36I | ACCTGC | 1 cut(s) | 2837 |
| Acc65I | GGTACC | 1 cut(s) | 375 |
| AccB1I | GGYRCC | 3 cut(s) | 375, 1876, 2094 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 496, 1072, 1751, 2809 |
| AccBSI | CCGCTC | 2 cut(s) | 1078, 2219 |
| AccI | GTMKAC | 3 cut(s) | 221, 574, 1398 |
| AccII | CGCG | 2 cut(s) | 1147, 1560 |
| AccIII | TCCGGA | 1 cut(s) | 2481 |
| AciI | CCGC | 8 cut(s) | 61, 557, 966, 1078, 1147, 2092, 2219, 3063 |
| AclI | AACGTT | 1 cut(s) | 427 |
| AclWI | GGATC | 5 cut(s) | 259, 542, 870, 939, 1026 |
| AcoI | YGGCCR | 3 cut(s) | 1063, 1260, 1590 |
| AcsI | RAATTY | 3 cut(s) | 614, 2971, 2991 |
| AcuI | CTGAAG | 4 cut(s) | 1020, 1866, 2574, 2742 |
| AcyI | GRCGYC | 1 cut(s) | 1877 |
| AdeI | CACNNNGTG | 1 cut(s) | 1751 |
| AfaI | GTAC | 8 cut(s) | 377, 1235, 1390, 1482, 1723, 2538, 3138, 3211 |
| AfeI | AGCGCT | 1 cut(s) | 1474 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 196, 496, 557, 931, 1072, 1751, 2580, 2760, 2809 |
| AflII | CTTAAG | 1 cut(s) | 2783 |
| AjiI | CACGTC | 1 cut(s) | 395 |
| AjnI | CCWGG | 5 cut(s) | 236, 984, 1195, 2655, 3044 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 178, 210, 1345, 1377, 2558, 2590 |
| Alw21I | GWGCWC | 1 cut(s) | 1713 |
| Alw26I | GTCTC | 4 cut(s) | 862, 897, 1672, 2712 |
| AlwI | GGATC | 5 cut(s) | 259, 542, 870, 939, 1026 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2452 |
| Ama87I | CYCGRG | 1 cut(s) | 2733 |
| Aor13HI | TCCGGA | 1 cut(s) | 2481 |
| Aor51HI | AGCGCT | 1 cut(s) | 1474 |
| AoxI | GGCC | 6 cut(s) | 310, 813, 1063, 1097, 1260, 1590 |
| ApeKI | GCWGC | 2 cut(s) | 1514, 3164 |
| ApoI | RAATTY | 3 cut(s) | 614, 2971, 2991 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 190 |
| Asp718I | GGTACC | 1 cut(s) | 375 |
| AspLEI | GCGC | 7 cut(s) | 692, 1475, 1560, 1879, 2020, 2475, 3094 |
| AspS9I | GGNCC | 1 cut(s) | 2800 |
| AsuC2I | CCSGG | 1 cut(s) | 1607 |
| AsuHPI | GGTGA | 3 cut(s) | 1856, 2386, 2743 |
| AsuII | TTCGAA | 1 cut(s) | 1521 |
| AvaI | CYCGRG | 1 cut(s) | 2733 |
| AvaII | GGWCC | 1 cut(s) | 2800 |
| BaeGI | GKGCMC | 2 cut(s) | 394, 1737 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1713, 1746 |
| BalI | TGGCCA | 3 cut(s) | 1065, 1262, 1592 |
| BanI | GGYRCC | 3 cut(s) | 375, 1876, 2094 |
| BanII | GRGCYC | 3 cut(s) | 2521, 2952, 3001 |
| BauI | CACGAG | 1 cut(s) | 1813 |
| BbsI | GAAGAC | 3 cut(s) | 448, 790, 1442 |
| Bbv12I | GWGCWC | 1 cut(s) | 1713 |
| BbvCI | CCTCAGC | 1 cut(s) | 2953 |
| BbvI | GCAGC | 2 cut(s) | 1501, 3151 |
| BceAI | ACGGC | 3 cut(s) | 1775, 2228, 2899 |
| BciT130I | CCWGG | 5 cut(s) | 238, 986, 1197, 2657, 3046 |
| BclI | TGATCA | 2 cut(s) | 117, 796 |
| BcnI | CCSGG | 1 cut(s) | 1607 |
| BcoDI | GTCTC | 4 cut(s) | 862, 897, 1672, 2712 |
| BfaI | CTAG | 6 cut(s) | 363, 527, 942, 2214, 2498, 2958 |
| BfoI | RGCGCY | 3 cut(s) | 1476, 1880, 3095 |
| BfrI | CTTAAG | 1 cut(s) | 2783 |
| BfuAI | ACCTGC | 1 cut(s) | 2837 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2045 |
| BglII | AGATCT | 1 cut(s) | 838 |
| BisI | GCNGC | 2 cut(s) | 1515, 3165 |
| BlsI | GCNGC | 2 cut(s) | 1516, 3166 |
| BmcAI | AGTACT | 1 cut(s) | 1235 |
| Bme1390I | CCNGG | 6 cut(s) | 238, 986, 1197, 1607, 2657, 3046 |
| Bme18I | GGWCC | 1 cut(s) | 2800 |
| BmeT110I | CYCGRG | 1 cut(s) | 2733 |
| BmgBI | CACGTC | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 1 cut(s) | 2800 |
| BmiI | GGNNCC | 9 cut(s) | 235, 377, 508, 609, 713, 1878, 2096, 2563, 2801 |
| BmrFI | CCNGG | 6 cut(s) | 238, 986, 1197, 1607, 2657, 3046 |
| BmrI | ACTGGG | 3 cut(s) | 381, 1655, 2710 |
| BmsI | GCATC | 6 cut(s) | 175, 967, 1338, 1626, 1695, 2803 |
| BmuI | ACTGGG | 3 cut(s) | 381, 1655, 2710 |
| BpiI | GAAGAC | 3 cut(s) | 448, 790, 1442 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1796, 1828 |
| BpmI | CTGGAG | 2 cut(s) | 1178, 2472 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2953 |
| Bpu14I | TTCGAA | 1 cut(s) | 1521 |
| BpuEI | CTTGAG | 2 cut(s) | 291, 2453 |
| BpuMI | CCSGG | 1 cut(s) | 1607 |
| Bsa29I | ATCGAT | 1 cut(s) | 1429 |
| BsaBI | GATNNNNATC | 2 cut(s) | 516, 2234 |
| BsaHI | GRCGYC | 1 cut(s) | 1877 |
| BsaI | GGTCTC | 1 cut(s) | 1672 |
| BsaJI | CCNNGG | 6 cut(s) | 96, 237, 925, 1196, 2841, 3045 |
| BsaWI | WCCGGW | 2 cut(s) | 1726, 2481 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 225, 255, 2375, 2405 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 196, 496, 557, 931, 1072, 1751, 2580, 2760, 2809 |
| Bse118I | RCCGGY | 2 cut(s) | 1099, 1125 |
| Bse1I | ACTGG | 5 cut(s) | 157, 376, 1241, 1650, 2716 |
| Bse3DI | GCAATG | 3 cut(s) | 1638, 2471, 2600 |
| Bse8I | GATNNNNATC | 2 cut(s) | 516, 2234 |
| BseAI | TCCGGA | 1 cut(s) | 2481 |
| BseBI | CCWGG | 5 cut(s) | 238, 986, 1197, 2657, 3046 |
| BseCI | ATCGAT | 1 cut(s) | 1429 |
| BseDI | CCNNGG | 6 cut(s) | 96, 237, 925, 1196, 2841, 3045 |
| BseGI | GGATG | 8 cut(s) | 74, 166, 1332, 1772, 2527, 2570, 2652, 2818 |
| BseJI | GATNNNNATC | 2 cut(s) | 516, 2234 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 196, 496, 557, 931, 1072, 1751, 2580, 2760, 2809 |
| BseMI | GCAATG | 3 cut(s) | 1638, 2471, 2600 |
| BseMII | CTCAG | 4 cut(s) | 114, 1481, 1794, 2967 |
| BseNI | ACTGG | 5 cut(s) | 157, 376, 1241, 1650, 2716 |
| BseRI | GAGGAG | 1 cut(s) | 2700 |
| BseSI | GKGCMC | 2 cut(s) | 394, 1737 |
| BseXI | GCAGC | 2 cut(s) | 1501, 3151 |
| BsgI | GTGCAG | 1 cut(s) | 1851 |
| Bsh1236I | CGCG | 2 cut(s) | 1147, 1560 |
| Bsh1285I | CGRYCG | 3 cut(s) | 466, 1126, 1606 |
| BshFI | GGCC | 6 cut(s) | 312, 815, 1065, 1099, 1262, 1592 |
| BshNI | GGYRCC | 3 cut(s) | 375, 1876, 2094 |
| BshVI | ATCGAT | 1 cut(s) | 1429 |
| BsiEI | CGRYCG | 3 cut(s) | 466, 1126, 1606 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1713 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2733 |
| BsiSI | CCGG | 5 cut(s) | 1100, 1126, 1606, 1727, 2482 |
| BslFI | GGGAC | 3 cut(s) | 306, 2066, 2813 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 196, 496, 557, 931, 1072, 1751, 2580, 2760, 2809 |
| BsmAI | GTCTC | 4 cut(s) | 862, 897, 1672, 2712 |
| BsmFI | GGGAC | 3 cut(s) | 306, 2066, 2813 |
| BsmI | GAATGC | 4 cut(s) | 1914, 2041, 2438, 2475 |
| BsnI | GGCC | 6 cut(s) | 312, 815, 1065, 1099, 1262, 1592 |
| Bso31I | GGTCTC | 1 cut(s) | 1672 |
| BsoBI | CYCGRG | 1 cut(s) | 2733 |
| Bsp119I | TTCGAA | 1 cut(s) | 1521 |
| Bsp1286I | GDGCHC | 6 cut(s) | 394, 1713, 1737, 2521, 2952, 3001 |
| Bsp13I | TCCGGA | 1 cut(s) | 2481 |
| Bsp1407I | TGTACA | 1 cut(s) | 1388 |
| Bsp19I | CCATGG | 1 cut(s) | 925 |
| BspACI | CCGC | 8 cut(s) | 61, 557, 966, 1078, 1147, 2092, 2219, 3063 |
| BspANI | GGCC | 6 cut(s) | 312, 815, 1065, 1099, 1262, 1592 |
| BspCNI | CTCAG | 4 cut(s) | 115, 1480, 1795, 2966 |
| BspDI | ATCGAT | 1 cut(s) | 1429 |
| BspEI | TCCGGA | 1 cut(s) | 2481 |
| BspFNI | CGCG | 2 cut(s) | 1147, 1560 |
| BspLI | GGNNCC | 9 cut(s) | 235, 377, 508, 609, 713, 1878, 2096, 2563, 2801 |
| BspMI | ACCTGC | 1 cut(s) | 2837 |
| BspPI | GGATC | 5 cut(s) | 259, 542, 870, 939, 1026 |
| BspQI | GCTCTTC | 2 cut(s) | 996, 1146 |
| BspT104I | TTCGAA | 1 cut(s) | 1521 |
| BspT107I | GGYRCC | 3 cut(s) | 375, 1876, 2094 |
| BspTI | CTTAAG | 1 cut(s) | 2783 |
| BspTNI | GGTCTC | 1 cut(s) | 1672 |
| BsrBI | CCGCTC | 2 cut(s) | 1078, 2219 |
| BsrDI | GCAATG | 3 cut(s) | 1638, 2471, 2600 |
| BsrFI | RCCGGY | 2 cut(s) | 1099, 1125 |
| BsrGI | TGTACA | 1 cut(s) | 1388 |
| BsrI | ACTGG | 5 cut(s) | 157, 376, 1241, 1650, 2716 |
| BssAI | RCCGGY | 2 cut(s) | 1099, 1125 |
| BssECI | CCNNGG | 6 cut(s) | 96, 237, 925, 1196, 2841, 3045 |
| BssNAI | GTATAC | 2 cut(s) | 222, 1399 |
| BssNI | GRCGYC | 1 cut(s) | 1877 |
| BssSI | CACGAG | 1 cut(s) | 1813 |
| BssT1I | CCWWGG | 2 cut(s) | 925, 2841 |
| Bst1107I | GTATAC | 2 cut(s) | 222, 1399 |
| Bst2BI | CACGAG | 1 cut(s) | 1813 |
| Bst2UI | CCWGG | 5 cut(s) | 238, 986, 1197, 2657, 3046 |
| Bst4CI | ACNGT | 9 cut(s) | 19, 141, 226, 579, 687, 1360, 1396, 1441, 3214 |
| Bst6I | CTCTTC | 8 cut(s) | 627, 996, 1057, 1146, 1547, 1974, 2156, 2761 |
| BstACI | GRCGYC | 1 cut(s) | 1877 |
| BstAFI | CTTAAG | 1 cut(s) | 2783 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1741 |
| BstAUI | TGTACA | 1 cut(s) | 1388 |
| BstBI | TTCGAA | 1 cut(s) | 1521 |
| BstC8I | GCNNGC | 7 cut(s) | 740, 1067, 1137, 1211, 1215, 1629, 2457 |
| BstDEI | CTNAG | 7 cut(s) | 123, 353, 1467, 1803, 2027, 2545, 2953 |
| BstDSI | CCRYGG | 2 cut(s) | 96, 925 |
| BstF5I | GGATG | 8 cut(s) | 74, 166, 1332, 1772, 2527, 2570, 2652, 2818 |
| BstFNI | CGCG | 2 cut(s) | 1147, 1560 |
| BstH2I | RGCGCY | 3 cut(s) | 1476, 1880, 3095 |
| BstHHI | GCGC | 7 cut(s) | 692, 1475, 1560, 1879, 2020, 2475, 3094 |
| BstMAI | GTCTC | 4 cut(s) | 862, 897, 1672, 2712 |
| BstMCI | CGRYCG | 3 cut(s) | 466, 1126, 1606 |
| BstNI | CCWGG | 5 cut(s) | 238, 986, 1197, 2657, 3046 |
| BstNSI | RCATGY | 5 cut(s) | 755, 806, 1213, 2890, 3146 |
| BstSCI | CCNGG | 6 cut(s) | 236, 984, 1195, 1605, 2655, 3044 |
| BstSLI | GKGCMC | 2 cut(s) | 394, 1737 |
| BstUI | CGCG | 2 cut(s) | 1147, 1560 |
| BstV1I | GCAGC | 2 cut(s) | 1501, 3151 |
| BstV2I | GAAGAC | 3 cut(s) | 448, 790, 1442 |
| BstX2I | RGATCY | 4 cut(s) | 264, 838, 944, 1018 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1678 |
| BstYI | RGATCY | 4 cut(s) | 264, 838, 944, 1018 |
| BstZ17I | GTATAC | 2 cut(s) | 222, 1399 |
| Bsu15I | ATCGAT | 1 cut(s) | 1429 |
| BsuRI | GGCC | 6 cut(s) | 312, 815, 1065, 1099, 1262, 1592 |
| BsuTUI | ATCGAT | 1 cut(s) | 1429 |
| BtgI | CCRYGG | 2 cut(s) | 96, 925 |
| BtgZI | GCGATG | 2 cut(s) | 1575, 3104 |
| BtrI | CACGTC | 1 cut(s) | 395 |
| BtsCI | GGATG | 8 cut(s) | 74, 166, 1332, 1772, 2527, 2570, 2652, 2818 |
| BtsI | GCAGTG | 3 cut(s) | 507, 2647, 2771 |
| BtsIMutI | CAGTG | 8 cut(s) | 24, 120, 507, 683, 1356, 1800, 2647, 2771 |
| BveI | ACCTGC | 1 cut(s) | 2837 |
| Cac8I | GCNNGC | 7 cut(s) | 740, 1067, 1137, 1211, 1215, 1629, 2457 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2452 |
| CfoI | GCGC | 7 cut(s) | 692, 1475, 1560, 1879, 2020, 2475, 3094 |
| Cfr10I | RCCGGY | 2 cut(s) | 1099, 1125 |
| Cfr13I | GGNCC | 1 cut(s) | 2800 |
| ClaI | ATCGAT | 1 cut(s) | 1429 |
| Csp6I | GTAC | 8 cut(s) | 376, 1234, 1389, 1481, 1722, 2537, 3137, 3210 |
| CviQI | GTAC | 8 cut(s) | 376, 1234, 1389, 1481, 1722, 2537, 3137, 3210 |
| DdeI | CTNAG | 7 cut(s) | 123, 353, 1467, 1803, 2027, 2545, 2953 |
| DinI | GGCGCC | 1 cut(s) | 1878 |
| DraI | TTTAAA | 3 cut(s) | 1284, 2076, 2163 |
| DraIII | CACNNNGTG | 1 cut(s) | 1751 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2491 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2491 |
| EaeI | YGGCCR | 3 cut(s) | 1063, 1260, 1590 |
| Eam1104I | CTCTTC | 8 cut(s) | 627, 996, 1057, 1146, 1547, 1974, 2156, 2761 |
| EarI | CTCTTC | 8 cut(s) | 627, 996, 1057, 1146, 1547, 1974, 2156, 2761 |
| EciI | GGCGGA | 1 cut(s) | 76 |
| Eco130I | CCWWGG | 2 cut(s) | 925, 2841 |
| Eco24I | GRGCYC | 3 cut(s) | 2521, 2952, 3001 |
| Eco31I | GGTCTC | 1 cut(s) | 1672 |
| Eco32I | GATATC | 1 cut(s) | 2909 |
| Eco47I | GGWCC | 1 cut(s) | 2800 |
| Eco47III | AGCGCT | 1 cut(s) | 1474 |
| Eco57I | CTGAAG | 4 cut(s) | 1020, 1866, 2574, 2742 |
| Eco88I | CYCGRG | 1 cut(s) | 2733 |
| EcoRI | GAATTC | 2 cut(s) | 614, 2971 |
| EcoRII | CCWGG | 5 cut(s) | 236, 984, 1195, 2655, 3044 |
| EcoRV | GATATC | 1 cut(s) | 2909 |
| EcoT14I | CCWWGG | 2 cut(s) | 925, 2841 |
| EcoT38I | GRGCYC | 3 cut(s) | 2521, 2952, 3001 |
| EgeI | GGCGCC | 1 cut(s) | 1878 |
| EheI | GGCGCC | 1 cut(s) | 1878 |
| ErhI | CCWWGG | 2 cut(s) | 925, 2841 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2157, 2189 |
| FaqI | GGGAC | 3 cut(s) | 306, 2066, 2813 |
| FauI | CCCGC | 3 cut(s) | 550, 1140, 2212 |
| FbaI | TGATCA | 2 cut(s) | 117, 796 |
| FblI | GTMKAC | 3 cut(s) | 221, 574, 1398 |
| Fnu4HI | GCNGC | 2 cut(s) | 1515, 3165 |
| FokI | GGATG | 8 cut(s) | 81, 153, 1319, 1779, 2514, 2557, 2639, 2825 |
| FriOI | GRGCYC | 3 cut(s) | 2521, 2952, 3001 |
| Fsp4HI | GCNGC | 2 cut(s) | 1515, 3165 |
| FspBI | CTAG | 6 cut(s) | 363, 527, 942, 2214, 2498, 2958 |
| FspI | TGCGCA | 1 cut(s) | 691 |
| GlaI | GCGC | 7 cut(s) | 691, 1474, 1559, 1878, 2019, 2474, 3093 |
| GluI | GCNGC | 2 cut(s) | 1515, 3165 |
| GsuI | CTGGAG | 2 cut(s) | 1178, 2472 |
| HaeII | RGCGCY | 3 cut(s) | 1476, 1880, 3095 |
| HaeIII | GGCC | 6 cut(s) | 312, 815, 1065, 1099, 1262, 1592 |
| HapII | CCGG | 5 cut(s) | 1100, 1126, 1606, 1727, 2482 |
| HhaI | GCGC | 7 cut(s) | 692, 1475, 1560, 1879, 2020, 2475, 3094 |
| Hin1I | GRCGYC | 1 cut(s) | 1877 |
| Hin6I | GCGC | 7 cut(s) | 690, 1473, 1558, 1877, 2018, 2473, 3092 |
| HinP1I | GCGC | 7 cut(s) | 690, 1473, 1558, 1877, 2018, 2473, 3092 |
| HincII | GTYRAC | 2 cut(s) | 768, 2730 |
| HindII | GTYRAC | 2 cut(s) | 768, 2730 |
| HindIII | AAGCTT | 1 cut(s) | 1137 |
| HpaI | GTTAAC | 1 cut(s) | 768 |
| HpaII | CCGG | 5 cut(s) | 1100, 1126, 1606, 1727, 2482 |
| HphI | GGTGA | 3 cut(s) | 1856, 2386, 2743 |
| Hpy166II | GTNNAC | 9 cut(s) | 222, 384, 575, 600, 768, 1389, 1399, 2730, 3137 |
| Hpy8I | GTNNAC | 9 cut(s) | 222, 384, 575, 600, 768, 1389, 1399, 2730, 3137 |
| Hpy99I | CGWCG | 1 cut(s) | 399 |
| HpyCH4III | ACNGT | 9 cut(s) | 19, 141, 226, 579, 687, 1360, 1396, 1441, 3214 |
| HpyCH4IV | ACGT | 5 cut(s) | 394, 427, 1009, 1452, 2079 |
| HpyF3I | CTNAG | 7 cut(s) | 123, 353, 1467, 1803, 2027, 2545, 2953 |
| HpySE526I | ACGT | 5 cut(s) | 394, 427, 1009, 1452, 2079 |
| Hsp92I | GRCGYC | 1 cut(s) | 1877 |
| HspAI | GCGC | 7 cut(s) | 690, 1473, 1558, 1877, 2018, 2473, 3092 |
| KasI | GGCGCC | 1 cut(s) | 1876 |
| Kpn2I | TCCGGA | 1 cut(s) | 2481 |
| KpnI | GGTACC | 1 cut(s) | 379 |
| Ksp22I | TGATCA | 2 cut(s) | 117, 796 |
| KspAI | GTTAAC | 1 cut(s) | 768 |
| LguI | GCTCTTC | 2 cut(s) | 996, 1146 |
| LmnI | GCTCC | 5 cut(s) | 233, 607, 1075, 1159, 2308 |
| Lsp1109I | GCAGC | 2 cut(s) | 1501, 3151 |
| LweI | GCATC | 6 cut(s) | 175, 967, 1338, 1626, 1695, 2803 |
| MaeI | CTAG | 6 cut(s) | 363, 527, 942, 2214, 2498, 2958 |
| MaeII | ACGT | 5 cut(s) | 394, 427, 1009, 1452, 2079 |
| MbiI | CCGCTC | 2 cut(s) | 1078, 2219 |
| MfeI | CAATTG | 1 cut(s) | 1419 |
| MflI | RGATCY | 4 cut(s) | 264, 838, 944, 1018 |
| MhlI | GDGCHC | 6 cut(s) | 394, 1713, 1737, 2521, 2952, 3001 |
| MlsI | TGGCCA | 3 cut(s) | 1065, 1262, 1592 |
| MluNI | TGGCCA | 3 cut(s) | 1065, 1262, 1592 |
| Mly113I | GGCGCC | 1 cut(s) | 1877 |
| MlyI | GAGTC | 5 cut(s) | 134, 462, 891, 2479, 2501 |
| MmeI | TCCRAC | 5 cut(s) | 229, 1396, 2179, 2609, 2904 |
| Mox20I | TGGCCA | 3 cut(s) | 1065, 1262, 1592 |
| MroI | TCCGGA | 1 cut(s) | 2481 |
| MroXI | GAANNNNTTC | 1 cut(s) | 190 |
| MscI | TGGCCA | 3 cut(s) | 1065, 1262, 1592 |
| MslI | CAYNNNNRTG | 2 cut(s) | 108, 2187 |
| Msp20I | TGGCCA | 3 cut(s) | 1065, 1262, 1592 |
| MspCI | CTTAAG | 1 cut(s) | 2783 |
| MspI | CCGG | 5 cut(s) | 1100, 1126, 1606, 1727, 2482 |
| MspR9I | CCNGG | 6 cut(s) | 238, 986, 1197, 1607, 2657, 3046 |
| MssI | GTTTAAAC | 1 cut(s) | 2076 |
| MunI | CAATTG | 1 cut(s) | 1419 |
| Mva1269I | GAATGC | 4 cut(s) | 1914, 2041, 2438, 2475 |
| MvaI | CCWGG | 5 cut(s) | 238, 986, 1197, 2657, 3046 |
| MvnI | CGCG | 2 cut(s) | 1147, 1560 |
| NarI | GGCGCC | 1 cut(s) | 1877 |
| NciI | CCSGG | 1 cut(s) | 1607 |
| NcoI | CCATGG | 1 cut(s) | 925 |
| NlaIV | GGNNCC | 9 cut(s) | 235, 377, 508, 609, 713, 1878, 2096, 2563, 2801 |
| NmuCI | GTSAC | 3 cut(s) | 101, 1028, 2849 |
| NsbI | TGCGCA | 1 cut(s) | 691 |
| NspI | RCATGY | 5 cut(s) | 755, 806, 1213, 2890, 3146 |
| NspV | TTCGAA | 1 cut(s) | 1521 |
| PaeI | GCATGC | 1 cut(s) | 1213 |
| PciSI | GCTCTTC | 2 cut(s) | 996, 1146 |
| PctI | GAATGC | 4 cut(s) | 1914, 2041, 2438, 2475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 190 |
| PfeI | GAWTC | 6 cut(s) | 134, 523, 1081, 1495, 2287, 2319 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 496, 1072, 1751, 2809 |
| PkrI | GCNGC | 2 cut(s) | 1516, 3166 |
| PleI | GAGTC | 5 cut(s) | 133, 461, 890, 2479, 2500 |
| PluTI | GGCGCC | 1 cut(s) | 1880 |
| PmeI | GTTTAAAC | 1 cut(s) | 2076 |
| PpsI | GAGTC | 5 cut(s) | 133, 461, 890, 2479, 2500 |
| PsiI | TTATAA | 1 cut(s) | 759 |
| Psp1406I | AACGTT | 1 cut(s) | 427 |
| Psp6I | CCWGG | 5 cut(s) | 236, 984, 1195, 2655, 3044 |
| PspGI | CCWGG | 5 cut(s) | 236, 984, 1195, 2655, 3044 |
| PspN4I | GGNNCC | 9 cut(s) | 235, 377, 508, 609, 713, 1878, 2096, 2563, 2801 |
| PspPI | GGNCC | 1 cut(s) | 2800 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2452 |
| PsuI | RGATCY | 4 cut(s) | 264, 838, 944, 1018 |
| RsaI | GTAC | 8 cut(s) | 377, 1235, 1390, 1482, 1723, 2538, 3138, 3211 |
| RsaNI | GTAC | 8 cut(s) | 376, 1234, 1389, 1481, 1722, 2537, 3137, 3210 |
| RseI | CAYNNNNRTG | 2 cut(s) | 108, 2187 |
| SapI | GCTCTTC | 2 cut(s) | 996, 1146 |
| SatI | GCNGC | 2 cut(s) | 1515, 3165 |
| Sau96I | GGNCC | 1 cut(s) | 2800 |
| ScaI | AGTACT | 1 cut(s) | 1235 |
| SchI | GAGTC | 5 cut(s) | 134, 462, 891, 2479, 2501 |
| ScrFI | CCNGG | 6 cut(s) | 238, 986, 1197, 1607, 2657, 3046 |
| SduI | GDGCHC | 6 cut(s) | 394, 1713, 1737, 2521, 2952, 3001 |
| SfaNI | GCATC | 6 cut(s) | 175, 967, 1338, 1626, 1695, 2803 |
| SfoI | GGCGCC | 1 cut(s) | 1878 |
| SfuI | TTCGAA | 1 cut(s) | 1521 |
| SinI | GGWCC | 1 cut(s) | 2800 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 108, 2187 |
| SmlI | CTYRAG | 3 cut(s) | 306, 2432, 2783 |
| SmoI | CTYRAG | 3 cut(s) | 306, 2432, 2783 |
| SphI | GCATGC | 1 cut(s) | 1213 |
| SsiI | CCGC | 8 cut(s) | 61, 557, 966, 1078, 1147, 2092, 2219, 3063 |
| SspDI | GGCGCC | 1 cut(s) | 1876 |
| SspI | AATATT | 2 cut(s) | 972, 2820 |
| SspMI | CTAG | 6 cut(s) | 363, 527, 942, 2214, 2498, 2958 |
| StyD4I | CCNGG | 6 cut(s) | 236, 984, 1195, 1605, 2655, 3044 |
| StyI | CCWWGG | 2 cut(s) | 925, 2841 |
| TaaI | ACNGT | 9 cut(s) | 19, 141, 226, 579, 687, 1360, 1396, 1441, 3214 |
| TaiI | ACGT | 5 cut(s) | 397, 430, 1012, 1455, 2082 |
| TaqI | TCGA | 6 cut(s) | 128, 1429, 1521, 2055, 2270, 2329 |
| TaqII | GACCGA | 2 cut(s) | 452, 2884 |
| TatI | WGTACW | 3 cut(s) | 1233, 1388, 3136 |
| TfiI | GAWTC | 6 cut(s) | 134, 523, 1081, 1495, 2287, 2319 |
| TscAI | CASTG | 8 cut(s) | 24, 127, 507, 690, 1363, 1807, 2647, 2771 |
| TseFI | GTSAC | 3 cut(s) | 101, 1028, 2849 |
| TseI | GCWGC | 2 cut(s) | 1514, 3164 |
| Tsp45I | GTSAC | 3 cut(s) | 101, 1028, 2849 |
| TspGWI | ACGGA | 3 cut(s) | 85, 583, 669 |
| TspRI | CASTG | 8 cut(s) | 24, 127, 507, 690, 1363, 1807, 2647, 2771 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 496, 1072, 1751, 2809 |
| Vha464I | CTTAAG | 1 cut(s) | 2783 |
| VpaK11BI | GGWCC | 1 cut(s) | 2800 |
| XapI | RAATTY | 3 cut(s) | 614, 2971, 2991 |
| XbaI | TCTAGA | 2 cut(s) | 941, 2213 |
| XceI | RCATGY | 5 cut(s) | 755, 806, 1213, 2890, 3146 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 493, 722, 2577 |
| XmiI | GTMKAC | 3 cut(s) | 221, 574, 1398 |
| XmnI | GAANNNNTTC | 1 cut(s) | 190 |
| XspI | CTAG | 6 cut(s) | 363, 527, 942, 2214, 2498, 2958 |
| ZrmI | AGTACT | 1 cut(s) | 1235 |