Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

3458496 .. 3459300

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05951.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATTACTGTGAAAGTGAGAGTACCGTCTTTTCTTCAGAAAAAAATGGAATGCAGAGGTAAGCGGCCATTGGGCGGGGCTTATAACCACATCACTAGAAAGGGGGGCATTGGATTTGCTTTTCAGAATGAGTTTGGGGTGATGGCTGCTGGAGGAGGTTGTCCACTAGATGGATTACTTTCAGCGGAACATGCAGAGGTGTTAGCTTGCAGGCATGCAGTTGATTTTGCTGTGAAACATGGTTTTAGTCAGGTTATTCTGGAAATTGATCGGAGCGGATTCAGTGCCCCATGGTGCACTAGAACCACTCATATACAGGTCACGTGCACCGTTAGTTGGAAGACGGAAGTTAACTCAATCTTTGGCCAGTCAAAGACGATAAAAACTGAGACCAAAGTTCCTAGTGCAGTAAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Carb_anhydrase

Protein Analysis

140

Amino Acids

15.1

Weight (kDa)

9.54

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	26 - 92	1.9e-08	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	276
AciI	CCGC	4 cut(s)	64, 75, 185, 276
AcoI	YGGCCR	2 cut(s)	65, 364
AcuI	CTGAAG	1 cut(s)	20
AcvI	CACGTG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	3 cut(s)	74, 170, 336
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw21I	GWGCWC	2 cut(s)	299, 329
Alw26I	GTCTC	1 cut(s)	383
Alw44I	GTGCAC	2 cut(s)	295, 325
AoxI	GGCC	2 cut(s)	65, 364
ApaLI	GTGCAC	2 cut(s)	295, 325
ApeKI	GCWGC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	151
BaeGI	GKGCMC	3 cut(s)	289, 299, 329
BalI	TGGCCA	1 cut(s)	366
BbrPI	CACGTG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	299, 329
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	136, 164
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	4 cut(s)	96, 167, 300, 402
BisI	GCNGC	2 cut(s)	65, 147
BlsI	GCNGC	2 cut(s)	66, 148
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 170, 336
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	290
BseLI	CCNNNNNNNGG	3 cut(s)	74, 170, 336
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	3 cut(s)	289, 299, 329
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	2 cut(s)	67, 366
BsiHKAI	GWGCWC	2 cut(s)	299, 329
BslI	CCNNNNNNNGG	3 cut(s)	74, 170, 336
BsmAI	GTCTC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	67, 366
Bso31I	GGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	3 cut(s)	289, 299, 329
Bsp143I	GATC	1 cut(s)	268
Bsp19I	CCATGG	1 cut(s)	290
BspACI	CCGC	4 cut(s)	64, 75, 185, 276
BspANI	GGCC	2 cut(s)	67, 366
BspCNI	CTCAG	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	10, 27, 331
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	208, 212, 216
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	290
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNSI	RCATGY	2 cut(s)	194, 218
BstSLI	GKGCMC	3 cut(s)	289, 299, 329
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	67, 366
BtgI	CCRYGG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	208, 212, 216
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	4 cut(s)	191, 215, 239, 291
CviJI	RGCY	5 cut(s)	67, 80, 146, 206, 366
CviKI_1	RGCY	5 cut(s)	67, 80, 146, 206, 366
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EaeI	YGGCCR	2 cut(s)	65, 364
Eco130I	CCWWGG	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	20
Eco72I	CACGTG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	4 cut(s)	194, 218, 242, 294
FaiI	YATR	7 cut(s)	84, 192, 216, 240, 292, 312, 314
FatI	CATG	4 cut(s)	190, 214, 238, 290
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	65, 147
Fsp4HI	GCNGC	2 cut(s)	65, 147
FspBI	CTAG	4 cut(s)	96, 167, 300, 402
GluI	GCNGC	2 cut(s)	65, 147
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	67, 366
Hin1II	CATG	4 cut(s)	194, 218, 242, 294
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	279
HpaI	GTTAAC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	164, 297, 327, 352
Hpy188I	TCNGA	3 cut(s)	39, 126, 273
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	4 cut(s)	164, 297, 327, 352
HpyCH4III	ACNGT	3 cut(s)	10, 27, 331
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	7 cut(s)	54, 194, 210, 218, 297, 327, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	4 cut(s)	194, 218, 242, 294
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	6 cut(s)	135, 196, 236, 245, 302, 380
Lsp1109I	GCAGC	1 cut(s)	133
MaeI	CTAG	4 cut(s)	96, 167, 300, 402
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	270
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	26, 352
MhlI	GDGCHC	3 cut(s)	289, 299, 329
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	1 cut(s)	264
MluNI	TGGCCA	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	50, 146, 149, 190
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	2 cut(s)	351, 418
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	194, 218, 242, 294
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	2 cut(s)	194, 218
PaeI	GCATGC	1 cut(s)	218
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	279
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	66, 148
PmaCI	CACGTG	1 cut(s)	324
PmlI	CACGTG	1 cut(s)	324
Ppu21I	YACGTR	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	84
PspCI	CACGTG	1 cut(s)	324
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	351, 418
SatI	GCNGC	2 cut(s)	65, 147
Sau3AI	GATC	1 cut(s)	268
SduI	GDGCHC	3 cut(s)	289, 299, 329
SetI	ASST	7 cut(s)	61, 160, 201, 208, 255, 321, 326
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	4 cut(s)	64, 75, 185, 276
SspMI	CTAG	4 cut(s)	96, 167, 300, 402
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	3 cut(s)	10, 27, 331
TaiI	ACGT	1 cut(s)	326
TasI	AATT	1 cut(s)	264
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	2 cut(s)	351, 418
Tru9I	TTAA	2 cut(s)	351, 418
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	319
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	170
VneI	GTGCAC	2 cut(s)	295, 325
XceI	RCATGY	2 cut(s)	194, 218
XspI	CTAG	4 cut(s)	96, 167, 300, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.