Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004373.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

32975 .. 35131

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004373.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atgtccgagcccaagcccaaagccaatctcagttctagagaaatcaggcccatacttggatcaaccatgggcccagacccatttccaaaacctagttacaaccaaaccaagcagtcgccacctcgacctggggatccgttatccccatacctgttcctcttggtgtctgaaggattatctagtctcctacataaggctgatgagcaaggtttggtccatgggaagtctgcattgtcctttaggccatgtgtttttgatcagcggaaggaggaaatacaagggattcttgttgttccggtggtggacttccacgaaaaatacctgggactgcccaccacgattggtaagaataaaaaagaagtctttcagaagactggaccatcatctacaaggttggcaagggaagttcctcttaaaagcggttgccaattggtgtgtgtaagaagtttcagtccaaagttagtcaattttggtggggaaagggtggcggtgctagaggaatacattggtgtaactgggagagactttgtaggaaaaaagaagaaggaggattggagtttcgggatctacgagcttttaactaatccatgcttacaaaaacagtatggcgaattttttggggttctggataagggtacaaggtggcagattggcagtggtaggagggtgagtatagttggtgataggcggctaccatgtcctactagtttccaagttgtttctcctcttaatataccggtggactggacggtagatcgcttatttacggagtcaggagcgtggaatgttccactgataaggtctttgtttcttgtacacgaagctgaggtgatcttgagtctgccattggggtgtagaacaattccagataaattggtttggcactatacaaataatggtgtttttagtgtgaagtcaggctattgggtagctcacgatttgcaaaataagaggaaagataacggcgctacctgcagctcttctattggcttggctctctggaagaaaatatggaggctgaatgttccccataaggttaaattgctaatctggagagccatccataattttttgctgtgtggtctatacttgcagaagagaaagatcactctggattcttcttgctggcaatgtggtgctctcagtgagttggtcatacatgttttttgggattttccagctgcaaagcatgtttggaagctatcgttcttaagtgaagtctgtaaaatatggaaggatccctctttcatcgatcttgtatcacatgttgctaacattgcagtggaacactcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

431

Amino Acids

48.56

Weight (kDa)

9.37

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	980
AciI	CCGC	4 cut(s)	262, 420, 488, 688
AclWI	GGATC	6 cut(s)	67, 128, 141, 572, 1232, 1245
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	2 cut(s)	637, 816
AfiI	CCNNNNNNNGG	3 cut(s)	56, 128, 193
AflII	CTTAAG	1 cut(s)	1210
AflIII	ACRYGT	2 cut(s)	1159, 1264
AgeI	ACCGGT	1 cut(s)	736
AhlI	ACTAGT	1 cut(s)	704
AjnI	CCWGG	2 cut(s)	127, 321
AluBI	AGCT	6 cut(s)	574, 824, 932, 978, 1181, 1201
AluI	AGCT	6 cut(s)	574, 824, 932, 978, 1181, 1201
Alw21I	GWGCWC	1 cut(s)	1141
Alw26I	GTCTC	2 cut(s)	188, 516
AlwI	GGATC	6 cut(s)	67, 128, 141, 572, 1232, 1245
AoxI	GGCC	3 cut(s)	47, 70, 242
ApaI	GGGCCC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	975, 1181
ApoI	RAATTY	1 cut(s)	611
AsiGI	ACCGGT	1 cut(s)	736
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	968
AspS9I	GGNCC	5 cut(s)	48, 70, 71, 214, 377
AsuHPI	GGTGA	3 cut(s)	679, 692, 841
AvaII	GGWCC	2 cut(s)	214, 377
BaeGI	GKGCMC	1 cut(s)	74
BamHI	GGATCC	2 cut(s)	133, 1237
BanII	GRGCYC	2 cut(s)	12, 74
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	1141
BbvCI	CCTCAGC	1 cut(s)	825
BbvI	GCAGC	2 cut(s)	987, 1168
BccI	CCATC	2 cut(s)	388, 1067
BceAI	ACGGC	1 cut(s)	979
BciT130I	CCWGG	2 cut(s)	129, 323
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	188, 516
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	5 cut(s)	36, 93, 180, 494, 705
BfmI	CTRYAG	1 cut(s)	973
BfoI	RGCGCY	1 cut(s)	969
BfrI	CTTAAG	1 cut(s)	1210
BfuAI	ACCTGC	1 cut(s)	980
BisI	GCNGC	3 cut(s)	689, 976, 1182
BlsI	GCNGC	3 cut(s)	690, 977, 1183
Bme1390I	CCNGG	2 cut(s)	129, 323
Bme18I	GGWCC	2 cut(s)	214, 377
BmgT120I	GGNCC	5 cut(s)	48, 70, 71, 214, 377
BmiI	GGNNCC	3 cut(s)	72, 135, 1239
BmrFI	CCNGG	2 cut(s)	129, 323
BmrI	ACTGGG	1 cut(s)	525
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	1072
Bpu10I	CCTNAGC	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	856
Bsa29I	ATCGAT	1 cut(s)	1251
BsaJI	CCNNGG	4 cut(s)	66, 128, 217, 322
BsaWI	WCCGGW	2 cut(s)	295, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 128, 193
Bse118I	RCCGGY	1 cut(s)	736
Bse1I	ACTGG	3 cut(s)	379, 520, 749
Bse3DI	GCAATG	2 cut(s)	1136, 1275
BseBI	CCWGG	2 cut(s)	129, 323
BseCI	ATCGAT	1 cut(s)	1251
BseDI	CCNNGG	4 cut(s)	66, 128, 217, 322
BseGI	GGATG	1 cut(s)	1059
BseLI	CCNNNNNNNGG	3 cut(s)	56, 128, 193
BseMI	GCAATG	2 cut(s)	1136, 1275
BseMII	CTCAG	3 cut(s)	43, 816, 1156
BseNI	ACTGG	3 cut(s)	379, 520, 749
BseRI	GAGGAG	1 cut(s)	714
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	987, 1168
BshFI	GGCC	3 cut(s)	49, 72, 244
BshTI	ACCGGT	1 cut(s)	736
BshVI	ATCGAT	1 cut(s)	1251
BsiHKAI	GWGCWC	1 cut(s)	1141
BsiSI	CCGG	2 cut(s)	296, 737
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	3 cut(s)	56, 128, 193
BsmAI	GTCTC	2 cut(s)	188, 516
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	3 cut(s)	49, 72, 244
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	3 cut(s)	12, 74, 1141
Bsp1407I	TGTACA	1 cut(s)	814
Bsp143I	GATC	9 cut(s)	59, 133, 256, 564, 754, 831, 1104, 1237, 1252
Bsp19I	CCATGG	2 cut(s)	66, 217
BspACI	CCGC	4 cut(s)	262, 420, 488, 688
BspANI	GGCC	3 cut(s)	49, 72, 244
BspCNI	CTCAG	3 cut(s)	42, 817, 1155
BspDI	ATCGAT	1 cut(s)	1251
BspLI	GGNNCC	3 cut(s)	72, 135, 1239
BspMAI	CTGCAG	1 cut(s)	977
BspMI	ACCTGC	1 cut(s)	980
BspPI	GGATC	6 cut(s)	67, 128, 141, 572, 1232, 1245
BspQI	GCTCTTC	1 cut(s)	985
BspTI	CTTAAG	1 cut(s)	1210
BsrDI	GCAATG	2 cut(s)	1136, 1275
BsrFI	RCCGGY	1 cut(s)	736
BsrGI	TGTACA	1 cut(s)	814
BsrI	ACTGG	3 cut(s)	379, 520, 749
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	4 cut(s)	66, 128, 217, 322
BssMI	GATC	9 cut(s)	59, 133, 256, 564, 754, 831, 1104, 1237, 1252
BssT1I	CCWWGG	2 cut(s)	66, 217
Bst2UI	CCWGG	2 cut(s)	129, 323
Bst4CI	ACNGT	2 cut(s)	603, 751
Bst6I	CTCTTC	2 cut(s)	985, 1091
BstAFI	CTTAAG	1 cut(s)	1210
BstAUI	TGTACA	1 cut(s)	814
BstC8I	GCNNGC	1 cut(s)	1127
BstDEI	CTNAG	3 cut(s)	29, 825, 1142
BstDSI	CCRYGG	2 cut(s)	66, 217
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	1059
BstH2I	RGCGCY	1 cut(s)	969
BstHHI	GCGC	1 cut(s)	968
BstKTI	GATC	9 cut(s)	62, 136, 259, 567, 757, 834, 1107, 1240, 1255
BstMAI	GTCTC	2 cut(s)	188, 516
BstMBI	GATC	9 cut(s)	59, 133, 256, 564, 754, 831, 1104, 1237, 1252
BstMWI	GCNNNNNNNGC	2 cut(s)	972, 1277
BstNI	CCWGG	2 cut(s)	129, 323
BstNSI	RCATGY	3 cut(s)	1163, 1193, 1268
BstSCI	CCNGG	2 cut(s)	127, 321
BstSFI	CTRYAG	1 cut(s)	973
BstSLI	GKGCMC	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	987, 1168
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	3 cut(s)	133, 564, 1237
BstYI	RGATCY	3 cut(s)	133, 564, 1237
Bsu15I	ATCGAT	1 cut(s)	1251
BsuRI	GGCC	3 cut(s)	49, 72, 244
BsuTUI	ATCGAT	1 cut(s)	1251
BtgI	CCRYGG	2 cut(s)	66, 217
BtsCI	GGATG	1 cut(s)	1059
BtsI	GCAGTG	2 cut(s)	661, 1287
BtsIMutI	CAGTG	4 cut(s)	661, 791, 1150, 1287
BveI	ACCTGC	1 cut(s)	980
Cac8I	GCNNGC	1 cut(s)	1127
CfoI	GCGC	1 cut(s)	968
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	5 cut(s)	48, 70, 71, 214, 377
ClaI	ATCGAT	1 cut(s)	1251
Csp6I	GTAC	2 cut(s)	636, 815
CspAI	ACCGGT	1 cut(s)	736
CspCI	CAANNNNNGTGG	4 cut(s)	322, 357, 454, 489
CviAII	CATG	8 cut(s)	67, 218, 246, 588, 696, 1160, 1190, 1265
CviQI	GTAC	2 cut(s)	636, 815
DdeI	CTNAG	3 cut(s)	29, 825, 1142
DpnI	GATC	9 cut(s)	61, 135, 258, 566, 756, 833, 1106, 1239, 1254
DpnII	GATC	9 cut(s)	59, 133, 256, 564, 754, 831, 1104, 1237, 1252
Eam1104I	CTCTTC	2 cut(s)	985, 1091
EarI	CTCTTC	2 cut(s)	985, 1091
Eco130I	CCWWGG	2 cut(s)	66, 217
Eco24I	GRGCYC	2 cut(s)	12, 74
Eco47I	GGWCC	2 cut(s)	214, 377
Eco57I	CTGAAG	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	127, 321
EcoT14I	CCWWGG	2 cut(s)	66, 217
EcoT38I	GRGCYC	2 cut(s)	12, 74
ErhI	CCWWGG	2 cut(s)	66, 217
FaeI	CATG	8 cut(s)	70, 221, 249, 591, 699, 1163, 1193, 1268
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 396, 428
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	8 cut(s)	66, 217, 245, 587, 695, 1159, 1189, 1264
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	689, 976, 1182
FokI	GGATG	1 cut(s)	1046
FriOI	GRGCYC	2 cut(s)	12, 74
Fsp4HI	GCNGC	3 cut(s)	689, 976, 1182
FspBI	CTAG	5 cut(s)	36, 93, 180, 494, 705
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	3 cut(s)	689, 976, 1182
GsuI	CTGGAG	1 cut(s)	1072
HaeII	RGCGCY	1 cut(s)	969
HaeIII	GGCC	3 cut(s)	49, 72, 244
HapII	CCGG	2 cut(s)	296, 737
HhaI	GCGC	1 cut(s)	968
Hin1II	CATG	8 cut(s)	70, 221, 249, 591, 699, 1163, 1193, 1268
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HinfI	GANTC	4 cut(s)	283, 770, 838, 1115
HpaII	CCGG	2 cut(s)	296, 737
HphI	GGTGA	3 cut(s)	679, 692, 841
Hpy166II	GTNNAC	3 cut(s)	304, 742, 817
Hpy188I	TCNGA	3 cut(s)	7, 169, 369
Hpy8I	GTNNAC	3 cut(s)	304, 742, 817
HpyAV	CCTTC	4 cut(s)	164, 259, 538, 1228
HpyCH4III	ACNGT	2 cut(s)	603, 751
HpyCH4V	TGCA	6 cut(s)	230, 943, 975, 1093, 1184, 1280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	972, 1277
HpyF3I	CTNAG	3 cut(s)	29, 825, 1142
Hsp92II	CATG	8 cut(s)	70, 221, 249, 591, 699, 1163, 1193, 1268
HspAI	GCGC	1 cut(s)	966
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	9 cut(s)	59, 133, 256, 564, 754, 831, 1104, 1237, 1252
LguI	GCTCTTC	1 cut(s)	985
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	2 cut(s)	987, 1168
MaeI	CTAG	5 cut(s)	36, 93, 180, 494, 705
MaeIII	GTNAC	2 cut(s)	95, 511
MalI	GATC	9 cut(s)	61, 135, 258, 566, 756, 833, 1106, 1239, 1254
MboI	GATC	9 cut(s)	59, 133, 256, 564, 754, 831, 1104, 1237, 1252
MboII	GAAGA	6 cut(s)	382, 553, 972, 1015, 1108, 1110
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	3 cut(s)	133, 564, 1237
MhlI	GDGCHC	3 cut(s)	12, 74, 1141
MluCI	AATT	7 cut(s)	428, 466, 611, 861, 872, 1040, 1066
MlyI	GAGTC	2 cut(s)	779, 847
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	5 cut(s)	414, 578, 729, 1038, 1211
MslI	CAYNNNNRTG	2 cut(s)	850, 1280
MspA1I	CMGCKG	2 cut(s)	262, 1181
MspCI	CTTAAG	1 cut(s)	1210
MspI	CCGG	2 cut(s)	296, 737
MspR9I	CCNGG	2 cut(s)	129, 323
MunI	CAATTG	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	129, 323
MwoI	GCNNNNNNNGC	2 cut(s)	972, 1277
NcoI	CCATGG	2 cut(s)	66, 217
NdeII	GATC	9 cut(s)	59, 133, 256, 564, 754, 831, 1104, 1237, 1252
NlaIII	CATG	8 cut(s)	70, 221, 249, 591, 699, 1163, 1193, 1268
NlaIV	GGNNCC	3 cut(s)	72, 135, 1239
NspI	RCATGY	3 cut(s)	1163, 1193, 1268
PciI	ACATGT	2 cut(s)	1159, 1264
PciSI	GCTCTTC	1 cut(s)	985
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	283, 1115
PinAI	ACCGGT	1 cut(s)	736
PkrI	GCNGC	3 cut(s)	690, 977, 1183
PleI	GAGTC	2 cut(s)	778, 846
PpsI	GAGTC	2 cut(s)	778, 846
PscI	ACATGT	2 cut(s)	1159, 1264
Psp6I	CCWGG	2 cut(s)	127, 321
PspGI	CCWGG	2 cut(s)	127, 321
PspN4I	GGNNCC	3 cut(s)	72, 135, 1239
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	5 cut(s)	48, 70, 71, 214, 377
PstI	CTGCAG	1 cut(s)	977
PsuI	RGATCY	3 cut(s)	133, 564, 1237
PvuII	CAGCTG	1 cut(s)	1181
RsaI	GTAC	2 cut(s)	637, 816
RsaNI	GTAC	2 cut(s)	636, 815
RseI	CAYNNNNRTG	2 cut(s)	850, 1280
SapI	GCTCTTC	1 cut(s)	985
SaqAI	TTAA	5 cut(s)	414, 578, 729, 1038, 1211
SatI	GCNGC	3 cut(s)	689, 976, 1182
Sau3AI	GATC	9 cut(s)	59, 133, 256, 564, 754, 831, 1104, 1237, 1252
Sau96I	GGNCC	5 cut(s)	48, 70, 71, 214, 377
SchI	GAGTC	2 cut(s)	779, 847
ScrFI	CCNGG	2 cut(s)	129, 323
SduI	GDGCHC	3 cut(s)	12, 74, 1141
SfcI	CTRYAG	1 cut(s)	973
SinI	GGWCC	2 cut(s)	214, 377
SmiMI	CAYNNNNRTG	2 cut(s)	850, 1280
SmlI	CTYRAG	2 cut(s)	835, 1210
SmoI	CTYRAG	2 cut(s)	835, 1210
SpeI	ACTAGT	1 cut(s)	704
Sse9I	AATT	7 cut(s)	428, 466, 611, 861, 872, 1040, 1066
SsiI	CCGC	4 cut(s)	262, 420, 488, 688
SspMI	CTAG	5 cut(s)	36, 93, 180, 494, 705
StyD4I	CCNGG	2 cut(s)	127, 321
StyI	CCWWGG	2 cut(s)	66, 217
TaaI	ACNGT	2 cut(s)	603, 751
TaqI	TCGA	2 cut(s)	124, 1251
TasI	AATT	7 cut(s)	428, 466, 611, 861, 872, 1040, 1066
TatI	WGTACW	1 cut(s)	814
TauI	GCSGC	1 cut(s)	691
TfiI	GAWTC	2 cut(s)	283, 1115
Tru1I	TTAA	5 cut(s)	414, 578, 729, 1038, 1211
Tru9I	TTAA	5 cut(s)	414, 578, 729, 1038, 1211
TscAI	CASTG	4 cut(s)	661, 798, 1150, 1287
TseI	GCWGC	2 cut(s)	975, 1181
TspDTI	ATGAA	1 cut(s)	1237
TspGWI	ACGGA	2 cut(s)	126, 782
TspRI	CASTG	4 cut(s)	661, 798, 1150, 1287
Vha464I	CTTAAG	1 cut(s)	1210
VpaK11BI	GGWCC	2 cut(s)	214, 377
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	611
XbaI	TCTAGA	1 cut(s)	35
XceI	RCATGY	3 cut(s)	1163, 1193, 1268
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	5 cut(s)	36, 93, 180, 494, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.