Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

29289632 .. 29292868

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37191.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAAGAATGCTAGCGCTTGTAGCGAGGCATTGGATATGAAGATTGTTCTTTGTCATGAGCGCTATCTTAGATTACCTATTACAACAGGCAGGAGCAAGAAAAAGTTGTTTAAAGGTTTGGCAGATCGAGTTTGGAAAAGAATTCAAGGGTGGGAAGGTAAAATTTTATCAATAGGGGGAAAAGAGGGAAAGCTGGATGATAAGGGTATTCGTTGGAGTAAATGGGCTAAGCTTTGTATCCCGAAGAAGGAGGGTGGTTTGCGATATAAAGAGTTTCAAAGTTTTAACCAAGCTTTGGTTACAAAAGTTAGGTGGAGATTGTTGCAGGACAATAAGTCTTTAATTGGAAGGATGTTGAAAGCTAAGTACTTTCCAAAATGCTCTTTTCTTGAAGCTGAAACTGGTAGAAGTCCATCTAATGTTTGGAGGGCGGACCCTTGGATTGCTGATATTCAGGATTTCGGAATAGCATGGAAAGAGGGGCTGAATTGGGACATGAGTGAGAAGAGACAACAATCCCCGGTAGTTTCTGAATATTGGAAGCACCTTTGGAAGCTCAAAGTTCCACTGAAGATGAGCCACTTTTTATGGAGATGTTCAATGAGTGTTTACTGTGTATGTGGTCTTTATACAAGCGGTGCATCATGGGCTGCGATTTTGGCAGCCACCGTTTTCACCCTCGGGTTACGACTCTGCTGGGGTCGTCTTCGTGGAGGGAAGAGATTCGATCTTGATTGGAAACGACATCCAGCTTGGTTTTGTTGGCTACTAGATAATGAGATTAGAGTGCTGCTGGAGGTGGGAACGATAATCTGGCCGGTTATGTTGACAGGGTTGGTTGCCGAAGTCAACAATGGTTGTCTCTGCAAGGAAGCAAATCAGAGATTTGCTCTTTTGGGTTCCATCATGGGCTCATGGCTCAAGTTTGGATCCATTTGGATCTGCGTTTTGCAGATCTATGGTTCTGGATTTAGGATCCAGGTATCACTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

332

Amino Acids

38.16

Weight (kDa)

9.79

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	2 cut(s)	431, 636
AclWI	GGATC	5 cut(s)	924, 937, 947, 970, 983
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	2 cut(s)	141, 162
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	1 cut(s)	368
AfeI	AGCGCT	2 cut(s)	16, 62
AfiI	CCNNNNNNNGG	2 cut(s)	247, 295
AgsI	TTSAA	5 cut(s)	146, 278, 358, 392, 600
AhdI	GACNNNNNGTC	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	978
AluBI	AGCT	7 cut(s)	193, 232, 293, 362, 395, 556, 752
AluI	AGCT	7 cut(s)	193, 232, 293, 362, 395, 556, 752
Alw26I	GTCTC	2 cut(s)	502, 866
AlwI	GGATC	5 cut(s)	924, 937, 947, 970, 983
Ama87I	CYCGRG	1 cut(s)	680
Aor51HI	AGCGCT	2 cut(s)	16, 62
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	3 cut(s)	650, 662, 790
ApoI	RAATTY	2 cut(s)	141, 162
Asp700I	GAANNNNTTC	1 cut(s)	722
AspLEI	GCGC	2 cut(s)	17, 63
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	667
AsuNHI	GCTAGC	1 cut(s)	11
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	433
BamHI	GGATCC	2 cut(s)	929, 975
BanII	GRGCYC	1 cut(s)	914
BbsI	GAAGAC	1 cut(s)	698
BbvI	GCAGC	3 cut(s)	637, 674, 777
BccI	CCATC	2 cut(s)	421, 911
BciT130I	CCWGG	1 cut(s)	980
BciVI	GTATCC	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	2 cut(s)	502, 866
BfaI	CTAG	2 cut(s)	12, 770
BfoI	RGCGCY	2 cut(s)	18, 64
BfuI	GTATCC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	954
BisI	GCNGC	3 cut(s)	651, 663, 791
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	3 cut(s)	652, 664, 792
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	521, 980
Bme18I	GGWCC	1 cut(s)	433
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	4 cut(s)	435, 901, 931, 977
BmrFI	CCNGG	2 cut(s)	521, 980
BmsI	GCATC	1 cut(s)	650
BmtI	GCTAGC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	698
BplI	GAGNNNNNCTC	2 cut(s)	874, 906
BpmI	CTGGAG	1 cut(s)	815
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	905
BpuMI	CCSGG	1 cut(s)	521
BsaJI	CCNNGG	3 cut(s)	437, 519, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 295
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	980
BseDI	CCNNGG	3 cut(s)	437, 519, 679
BseGI	GGATG	3 cut(s)	202, 357, 745
BseLI	CCNNNNNNNGG	2 cut(s)	247, 295
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	3 cut(s)	637, 674, 777
BseYI	CCCAGC	1 cut(s)	696
BshFI	GGCC	1 cut(s)	817
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	2 cut(s)	521, 818
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	247, 295
BsmAI	GTCTC	2 cut(s)	502, 866
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	817
BsoBI	CYCGRG	1 cut(s)	680
Bsp1286I	GDGCHC	1 cut(s)	914
Bsp143I	GATC	6 cut(s)	124, 727, 929, 939, 954, 975
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	2 cut(s)	431, 636
BspANI	GGCC	1 cut(s)	817
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	435, 901, 931, 977
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	5 cut(s)	924, 937, 947, 970, 983
BsrFI	RCCGGY	1 cut(s)	817
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	3 cut(s)	437, 519, 679
BssMI	GATC	6 cut(s)	124, 727, 929, 939, 954, 975
BssT1I	CCWWGG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	980
Bst4CI	ACNGT	2 cut(s)	614, 670
Bst6I	CTCTTC	2 cut(s)	500, 713
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	68, 228, 363
BstF5I	GGATG	3 cut(s)	202, 357, 745
BstH2I	RGCGCY	2 cut(s)	18, 64
BstHHI	GCGC	2 cut(s)	17, 63
BstKTI	GATC	6 cut(s)	127, 730, 932, 942, 957, 978
BstMAI	GTCTC	2 cut(s)	502, 866
BstMBI	GATC	6 cut(s)	124, 727, 929, 939, 954, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 647, 659
BstNI	CCWGG	1 cut(s)	980
BstSCI	CCNGG	2 cut(s)	519, 978
BstV1I	GCAGC	3 cut(s)	637, 674, 777
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	4 cut(s)	929, 939, 954, 975
BstYI	RGATCY	4 cut(s)	929, 939, 954, 975
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	817
BtsCI	GGATG	3 cut(s)	202, 357, 745
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	2 cut(s)	17, 63
Cfr10I	RCCGGY	1 cut(s)	817
Cfr13I	GGNCC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	6 cut(s)	56, 471, 496, 645, 907, 915
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	68, 228, 363
DpnI	GATC	6 cut(s)	126, 729, 931, 941, 956, 977
DpnII	GATC	6 cut(s)	124, 727, 929, 939, 954, 975
DraI	TTTAAA	1 cut(s)	112
DriI	GACNNNNNGTC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	815
Eam1104I	CTCTTC	2 cut(s)	500, 713
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EarI	CTCTTC	2 cut(s)	500, 713
EciI	GGCGGA	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	914
Eco47I	GGWCC	1 cut(s)	433
Eco47III	AGCGCT	2 cut(s)	16, 62
Eco57I	CTGAAG	1 cut(s)	590
Eco88I	CYCGRG	1 cut(s)	680
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	978
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	914
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	6 cut(s)	59, 474, 499, 648, 910, 918
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	6 cut(s)	55, 470, 495, 644, 906, 914
Fnu4HI	GCNGC	3 cut(s)	651, 663, 791
FokI	GGATG	3 cut(s)	209, 364, 732
FriOI	GRGCYC	1 cut(s)	914
Fsp4HI	GCNGC	3 cut(s)	651, 663, 791
FspBI	CTAG	2 cut(s)	12, 770
GlaI	GCGC	2 cut(s)	16, 62
GluI	GCNGC	3 cut(s)	651, 663, 791
GsaI	CCCAGC	1 cut(s)	700
GsuI	CTGGAG	1 cut(s)	815
HaeII	RGCGCY	2 cut(s)	18, 64
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	2 cut(s)	521, 818
HhaI	GCGC	2 cut(s)	17, 63
Hin1II	CATG	6 cut(s)	59, 474, 499, 648, 910, 918
Hin6I	GCGC	2 cut(s)	15, 61
HinP1I	GCGC	2 cut(s)	15, 61
HincII	GTYRAC	2 cut(s)	828, 850
HindII	GTYRAC	2 cut(s)	828, 850
HindIII	AAGCTT	2 cut(s)	230, 291
HinfI	GANTC	2 cut(s)	690, 723
HpaII	CCGG	2 cut(s)	521, 818
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	3 cut(s)	610, 828, 850
Hpy188I	TCNGA	3 cut(s)	464, 532, 882
Hpy188III	TCNNGA	6 cut(s)	56, 241, 389, 455, 731, 966
Hpy8I	GTNNAC	3 cut(s)	610, 828, 850
HpyAV	CCTTC	3 cut(s)	149, 241, 342
HpyCH4III	ACNGT	2 cut(s)	614, 670
HpyCH4V	TGCA	4 cut(s)	325, 641, 867, 952
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 647, 659
HpyF3I	CTNAG	3 cut(s)	68, 228, 363
Hsp92II	CATG	6 cut(s)	59, 474, 499, 648, 910, 918
HspAI	GCGC	2 cut(s)	15, 61
Kzo9I	GATC	6 cut(s)	124, 727, 929, 939, 954, 975
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	3 cut(s)	637, 674, 777
LweI	GCATC	1 cut(s)	650
MaeI	CTAG	2 cut(s)	12, 770
MaeIII	GTNAC	2 cut(s)	298, 684
MalI	GATC	6 cut(s)	126, 729, 931, 941, 956, 977
MboI	GATC	6 cut(s)	124, 727, 929, 939, 954, 975
MboII	GAAGA	7 cut(s)	16, 52, 256, 517, 583, 698, 730
MflI	RGATCY	4 cut(s)	929, 939, 954, 975
MhlI	GDGCHC	1 cut(s)	914
MluCI	AATT	4 cut(s)	141, 162, 342, 487
MlyI	GAGTC	1 cut(s)	684
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	8 cut(s)	19, 178, 244, 420, 472, 689, 707, 790
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	3 cut(s)	111, 285, 341
MspI	CCGG	2 cut(s)	521, 818
MspR9I	CCNGG	2 cut(s)	521, 980
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	980
MwoI	GCNNNNNNNGC	3 cut(s)	21, 647, 659
NciI	CCSGG	1 cut(s)	521
NdeII	GATC	6 cut(s)	124, 727, 929, 939, 954, 975
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	6 cut(s)	59, 474, 499, 648, 910, 918
NlaIV	GGNNCC	4 cut(s)	435, 901, 931, 977
PagI	TCATGA	1 cut(s)	55
PctI	GAATGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	1 cut(s)	723
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	652, 664, 792
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	978
PspFI	CCCAGC	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	978
PspN4I	GGNNCC	4 cut(s)	435, 901, 931, 977
PspPI	GGNCC	1 cut(s)	433
PsuI	RGATCY	4 cut(s)	929, 939, 954, 975
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	3 cut(s)	111, 285, 341
SatI	GCNGC	3 cut(s)	651, 663, 791
Sau3AI	GATC	6 cut(s)	124, 727, 929, 939, 954, 975
Sau96I	GGNCC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	1 cut(s)	684
ScrFI	CCNGG	2 cut(s)	521, 980
SduI	GDGCHC	1 cut(s)	914
SfaNI	GCATC	1 cut(s)	650
SinI	GGWCC	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
Sse9I	AATT	4 cut(s)	141, 162, 342, 487
SsiI	CCGC	2 cut(s)	431, 636
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	2 cut(s)	12, 770
StyD4I	CCNGG	2 cut(s)	519, 978
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	2 cut(s)	614, 670
TaqI	TCGA	2 cut(s)	127, 726
TasI	AATT	4 cut(s)	141, 162, 342, 487
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	723
Tru1I	TTAA	3 cut(s)	111, 285, 341
Tru9I	TTAA	3 cut(s)	111, 285, 341
TscAI	CASTG	1 cut(s)	573
TseI	GCWGC	3 cut(s)	650, 662, 790
TspDTI	ATGAA	2 cut(s)	17, 53
TspRI	CASTG	1 cut(s)	573
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	2 cut(s)	141, 162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	2 cut(s)	12, 770
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.