Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005307.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

49633 .. 50971

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005307.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggttcttaagctcgatatcagcaaagcgtatgaacagagtggaatggaggttcttaagggaggtaatgttgaagcttgggtttgcggaaagttgggattgtcgggtttgcttcatcatgctgataatatgggcttgattcatgggatgcgagtggcttcttcggcaccttctgtctctcatttactgtttgcagatgacagcttattgtttgtcaatgctactattcaggagagtattcatttgaagcagtgtttattattatacgagtccgcagctggtcagaagattaattttgagaagtcgggtctttcttttgggcctaattgttcagatgatgtaaaattggaagtacataatatgctcaatgtccctgtagtggagtgccatgaaaaatacctaggtcttcctactacaattggcataaataaaaatgaggtatttagaaagatgaacgagcgacttgactttcacctccaaggatggcaagggaagctcctctcaaaagcgggtaagcttgttttaattaaagcagttgctcaagctattcccacttattctatgagtgtgttccaattgcctattagagtgtgtaagaaatttcaatccaaagtttgtcagttttggtggggaaagggaggtggaacaagaggtatacattggtgtagctgggaaaatctttgtaggaagaaagatgatggaggtttgggtttccgggatctgagggcgttcaatcaatccatgctagctaaaacggtaggcctgctctggggtaagcaagtgattgatggtggtactcgatggagaattggatatagagtacgcataaagcaagacagatggattccttgtcctattacattcaaagtggtgtcacctttatctataccagatgatacaaaagtggaagctttgtttacagattctggcgcttggaatgtacctctcattagaggaatttttctgccccatgaagctgaggtgattttaagtatgcctttgggattgcgacgccgaataagcttgtctggcatcataccaagaatggagtgttcagtgtcaaatcctattattggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

359

Amino Acids

39.97

Weight (kDa)

9.31

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	655
AciI	CCGC	3 cut(s)	87, 273, 509
AclWI	GGATC	1 cut(s)	726
AcsI	RAATTY	2 cut(s)	599, 957
AcyI	GRCGYC	1 cut(s)	1012
AfaI	GTAC	4 cut(s)	354, 796, 822, 942
AfiI	CCNNNNNNNGG	3 cut(s)	379, 769, 1073
AflII	CTTAAG	2 cut(s)	8, 56
AgsI	TTSAA	5 cut(s)	74, 247, 605, 733, 865
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	726
AlwNI	CAGNNNCTG	1 cut(s)	926
AoxI	GGCC	2 cut(s)	320, 760
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	2 cut(s)	599, 957
AseI	ATTAAT	1 cut(s)	291
AspA2I	CCTAGG	1 cut(s)	400
AspLEI	GCGC	1 cut(s)	932
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	3 cut(s)	464, 867, 994
AsuNHI	GCTAGC	1 cut(s)	745
AvrII	CCTAGG	1 cut(s)	400
BaeI	ACNNNNGTAYC	2 cut(s)	888, 921
BanI	GGYRCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	978
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	5 cut(s)	477, 692, 782, 795, 834
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	401, 746
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	933
BfrI	CTTAAG	2 cut(s)	8, 56
BisI	GCNGC	1 cut(s)	276
BlnI	CCTAGG	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	2 cut(s)	138, 1041
BmtI	GCTAGC	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	978
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	1012
BsaJI	CCNNGG	2 cut(s)	400, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 769, 1073
BseDI	CCNNGG	2 cut(s)	400, 478
BseGI	GGATG	2 cut(s)	153, 488
BseLI	CCNNNNNNNGG	3 cut(s)	379, 769, 1073
BseMII	CTCAG	2 cut(s)	713, 969
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	669
BshFI	GGCC	2 cut(s)	322, 762
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	715
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	3 cut(s)	379, 769, 1073
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	322, 762
Bsp143I	GATC	1 cut(s)	718
BspACI	CCGC	3 cut(s)	87, 273, 509
BspANI	GGCC	2 cut(s)	322, 762
BspCNI	CTCAG	2 cut(s)	714, 970
BspLI	GGNNCC	1 cut(s)	168
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	166
BspTI	CTTAAG	2 cut(s)	8, 56
BssECI	CCNNGG	2 cut(s)	400, 478
BssMI	GATC	1 cut(s)	718
BssNAI	GTATAC	1 cut(s)	656
BssNI	GRCGYC	1 cut(s)	1012
BssT1I	CCWWGG	2 cut(s)	400, 478
Bst1107I	GTATAC	1 cut(s)	656
Bst4CI	ACNGT	2 cut(s)	189, 757
BstACI	GRCGYC	1 cut(s)	1012
BstAFI	CTTAAG	2 cut(s)	8, 56
BstC8I	GCNNGC	2 cut(s)	747, 764
BstDEI	CTNAG	2 cut(s)	722, 978
BstF5I	GGATG	2 cut(s)	153, 488
BstH2I	RGCGCY	1 cut(s)	933
BstHHI	GCGC	1 cut(s)	932
BstKTI	GATC	1 cut(s)	721
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	718
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 493, 1020, 1029
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BstZ17I	GTATAC	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	322, 762
BtsCI	GGATG	2 cut(s)	153, 488
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	257, 1062
Cac8I	GCNNGC	2 cut(s)	747, 764
CaiI	CAGNNNCTG	1 cut(s)	926
CfoI	GCGC	1 cut(s)	932
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	1020
Csp6I	GTAC	4 cut(s)	353, 795, 821, 941
CviAII	CATG	5 cut(s)	119, 143, 389, 742, 971
CviQI	GTAC	4 cut(s)	353, 795, 821, 941
DdeI	CTNAG	2 cut(s)	722, 978
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	400, 478
Eco147I	AGGCCT	1 cut(s)	762
Eco32I	GATATC	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	400, 478
ErhI	CCWWGG	2 cut(s)	400, 478
FaeI	CATG	5 cut(s)	122, 146, 392, 745, 974
FalI	AAGNNNNNCTT	2 cut(s)	982, 1014
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	5 cut(s)	118, 142, 388, 741, 970
FauI	CCCGC	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	655
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	160, 495
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	401, 746
GlaI	GCGC	1 cut(s)	931
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	673
HaeII	RGCGCY	1 cut(s)	933
HaeIII	GGCC	2 cut(s)	322, 762
HapII	CCGG	1 cut(s)	715
HgaI	GACGC	1 cut(s)	1020
HhaI	GCGC	1 cut(s)	932
Hin1I	GRCGYC	1 cut(s)	1012
Hin1II	CATG	5 cut(s)	122, 146, 392, 745, 974
Hin6I	GCGC	1 cut(s)	930
HinP1I	GCGC	1 cut(s)	930
HindIII	AAGCTT	4 cut(s)	75, 515, 909, 1021
HinfI	GANTC	4 cut(s)	139, 269, 844, 923
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	3 cut(s)	464, 867, 994
Hpy166II	GTNNAC	2 cut(s)	656, 918
Hpy188I	TCNGA	3 cut(s)	285, 334, 723
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	2 cut(s)	656, 918
Hpy99I	CGWCG	1 cut(s)	1014
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	2 cut(s)	189, 757
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 493, 1020, 1029
HpyF3I	CTNAG	2 cut(s)	722, 978
Hsp92I	GRCGYC	1 cut(s)	1012
Hsp92II	CATG	5 cut(s)	122, 146, 392, 745, 974
HspAI	GCGC	1 cut(s)	930
Kzo9I	GATC	1 cut(s)	718
LmnI	GCTCC	1 cut(s)	501
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	2 cut(s)	138, 1041
MaeI	CTAG	2 cut(s)	401, 746
MaeIII	GTNAC	1 cut(s)	873
MalI	GATC	1 cut(s)	720
MboI	GATC	1 cut(s)	718
MboII	GAAGA	4 cut(s)	153, 298, 398, 700
MfeI	CAATTG	2 cut(s)	417, 575
MflI	RGATCY	1 cut(s)	718
MluCI	AATT	9 cut(s)	292, 325, 344, 417, 525, 575, 599, 807, 957
MlyI	GAGTC	1 cut(s)	278
MseI	TTAA	6 cut(s)	9, 57, 291, 524, 528, 989
MspA1I	CMGCKG	1 cut(s)	278
MspCI	CTTAAG	2 cut(s)	8, 56
MspI	CCGG	1 cut(s)	715
MspR9I	CCNGG	1 cut(s)	716
MunI	CAATTG	2 cut(s)	417, 575
MwoI	GCNNNNNNNGC	4 cut(s)	164, 493, 1020, 1029
NciI	CCSGG	1 cut(s)	716
NdeII	GATC	1 cut(s)	718
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	5 cut(s)	122, 146, 392, 745, 974
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	873
PacI	TTAATTAA	1 cut(s)	528
PceI	AGGCCT	1 cut(s)	762
PfeI	GAWTC	3 cut(s)	139, 844, 923
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PshBI	ATTAAT	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	669
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	926
PsuI	RGATCY	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	4 cut(s)	354, 796, 822, 942
RsaNI	GTAC	4 cut(s)	353, 795, 821, 941
SaqAI	TTAA	6 cut(s)	9, 57, 291, 524, 528, 989
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	718
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	716
SfaNI	GCATC	2 cut(s)	138, 1041
SfcI	CTRYAG	1 cut(s)	375
SmlI	CTYRAG	3 cut(s)	8, 56, 540
SmoI	CTYRAG	3 cut(s)	8, 56, 540
Sse9I	AATT	9 cut(s)	292, 325, 344, 417, 525, 575, 599, 807, 957
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	3 cut(s)	87, 273, 509
SspMI	CTAG	2 cut(s)	401, 746
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	2 cut(s)	400, 478
TaaI	ACNGT	2 cut(s)	189, 757
TaqI	TCGA	2 cut(s)	15, 799
TasI	AATT	9 cut(s)	292, 325, 344, 417, 525, 575, 599, 807, 957
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	3 cut(s)	139, 844, 923
Tru1I	TTAA	6 cut(s)	9, 57, 291, 524, 528, 989
Tru9I	TTAA	6 cut(s)	9, 57, 291, 524, 528, 989
TscAI	CASTG	2 cut(s)	257, 1062
TseFI	GTSAC	1 cut(s)	873
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	873
TspDTI	ATGAA	7 cut(s)	48, 104, 131, 230, 405, 467, 987
TspRI	CASTG	2 cut(s)	257, 1062
Vha464I	CTTAAG	2 cut(s)	8, 56
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	2 cut(s)	599, 957
XmaJI	CCTAGG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	655
XspI	CTAG	2 cut(s)	401, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.