Prupe.5G143900_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001470
Physical Location & Seq
Reverse (-)
13294928 .. 13295387
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G143900.1

Sequence Viewer

Length: 402 bp
ATGATATGGAAATCTATTTTGTGGGGTCGTGTGGTTATTGAGGATGGTCTGATTTGGAGGGTGGGCAATGGAGCTTCTATCCGTATTTTCCAAGATAGGTGGATTCCAAAACCATTTACTTTCAAGCCGTTGTTGGCTAGAGGGCTGGATTGGAATACTACAGTCTCTGACCTTCTAACTGCTTCTGGTTCATGGGATTTACCTTTGTTAGAGCAACATTTTAGCTTGGAAGATCAAGATATTATTTCTAGCATCGCCTTGGGATCAGTCTCACAGCAGGGGGATAGCAAATATTGGTTTTTCTCAAAGAACGGGAAATATACCGTTAATACTGGGTATCGTGTCGCGGTTTTTGGATGCGAATTTGGAAGCTTGCAGTCCCCAACAAAATTAAAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

134

Amino Acids

15.05

Weight (kDa)

8.62

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 347
AciI CCGC 1 cut(s) 347
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 362
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 3 cut(s) 74, 225, 372
AluI AGCT 3 cut(s) 74, 225, 372
Alw26I GTCTC 2 cut(s) 169, 274
AlwI GGATC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 167
ApoI RAATTY 1 cut(s) 362
BccI CCATC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 169, 274
BfaI CTAG 2 cut(s) 138, 249
BfmI CTRYAG 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 261, 347
BmuI ACTGGG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 49, 362
BseMI GCAATG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 169, 274
BsmFI GGGAC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 232, 263
BspACI CCGC 1 cut(s) 347
BspFNI CGCG 1 cut(s) 347
BspPI GGATC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 232, 263
BssT1I CCWWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 163, 325
BstC8I GCNNGC 1 cut(s) 374
BstF5I GGATG 2 cut(s) 49, 362
BstFNI CGCG 1 cut(s) 347
BstKTI GATC 2 cut(s) 235, 266
BstMAI GTCTC 2 cut(s) 169, 274
BstMBI GATC 2 cut(s) 232, 263
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 1 cut(s) 347
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 2 cut(s) 49, 362
Cac8I GCNNGC 1 cut(s) 374
CaiI CAGNNNCTG 1 cut(s) 167
CspCI CAANNNNNGTGG 2 cut(s) 80, 115
CviAII CATG 1 cut(s) 192
CviJI RGCY 6 cut(s) 74, 127, 137, 145, 225, 372
CviKI_1 RGCY 6 cut(s) 74, 127, 137, 145, 225, 372
DpnI GATC 2 cut(s) 234, 265
DpnII GATC 2 cut(s) 232, 263
Eco130I CCWWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 195
FaiI YATR 3 cut(s) 7, 193, 321
FaqI GGGAC 1 cut(s) 364
FatI CATG 1 cut(s) 191
FokI GGATG 2 cut(s) 56, 369
FspBI CTAG 2 cut(s) 138, 249
Hin1II CATG 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 51, 169
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 2 cut(s) 163, 325
HpyCH4V TGCA 1 cut(s) 376
Hsp92II CATG 1 cut(s) 195
Kzo9I GATC 2 cut(s) 232, 263
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 4 cut(s) 131, 171, 263, 318
LweI GCATC 2 cut(s) 261, 347
MaeI CTAG 2 cut(s) 138, 249
MalI GATC 2 cut(s) 234, 265
MboI GATC 2 cut(s) 232, 263
MboII GAAGA 1 cut(s) 242
MluCI AATT 2 cut(s) 362, 389
MnlI CCTC 3 cut(s) 34, 51, 134
MseI TTAA 2 cut(s) 327, 392
MvnI CGCG 1 cut(s) 347
NdeII GATC 2 cut(s) 232, 263
NlaIII CATG 1 cut(s) 195
PfeI GAWTC 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 327, 392
Sau3AI GATC 2 cut(s) 232, 263
SetI ASST 6 cut(s) 76, 101, 174, 205, 227, 374
SfaNI GCATC 2 cut(s) 261, 347
SfcI CTRYAG 1 cut(s) 159
Sse9I AATT 2 cut(s) 362, 389
SsiI CCGC 1 cut(s) 347
SspI AATATT 1 cut(s) 293
SspMI CTAG 2 cut(s) 138, 249
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 163, 325
TasI AATT 2 cut(s) 362, 389
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 327, 392
Tru9I TTAA 2 cut(s) 327, 392
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 71
XapI RAATTY 1 cut(s) 362
XspI CTAG 2 cut(s) 138, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.