Rh1CG201700

zinc-binding in reverse transcriptase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
43806567 .. 43807016
450 bp
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UTR
Exon/CDS
Intron
Rh1CG201700.1

Sequence Viewer

Length: 450 bp
ATGGGGGAGTTGCTGAAAGTGAAGATATGGAAGGTATCTGGGAGAGACTGTAGGAGGAAGGACGGAGGCTTGGGATTCTGGGACCTACGAGCTTTTACTCAGGCTATGCTTGTGAAGACGGTTTGGAGAATTTTCTGGGGAAAACGTTCTTTGGTGAGTGAATTGTTGCAAGCAAGGTGCTTTCCGGAAACATGTTTTCTAAATGCTACTTTGGGGACTAATCCTTCGGCGGTTTGGAGAGGTTTATTGTGGGGTAAACAGGTTATTGATGGTGGCACTATATGGCGGATTGGTAATGGGAAAAGAGTCATTATTAAAGGTGATAGGTGGATGCCGTGTCCAACGAGCTTGAAAGTCGTTTCTCCTTTGAATGTTCTTATGGATTGTAAGGTTTACGGACTCAGGAGCCTTTGGTTAGGTCCTTATTTCTTTCACACGAAGCGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

149

Amino Acids

17.16

Weight (kDa)

10.51

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 3 cut(s) 230, 286, 442
AclI AACGTT 1 cut(s) 145
AcsI RAATTY 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 2 cut(s) 352, 370
AluBI AGCT 2 cut(s) 92, 348
AluI AGCT 2 cut(s) 92, 348
Alw26I GTCTC 1 cut(s) 39
Aor13HI TCCGGA 1 cut(s) 184
ApoI RAATTY 1 cut(s) 129
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
Asp700I GAANNNNTTC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 82, 419
AsuHPI GGTGA 2 cut(s) 166, 332
AvaII GGWCC 2 cut(s) 82, 419
BbsI GAAGAC 1 cut(s) 122
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 49
Bme18I GGWCC 2 cut(s) 82, 419
BmgT120I GGNCC 2 cut(s) 82, 419
BmiI GGNNCC 2 cut(s) 83, 407
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
BseAI TCCGGA 1 cut(s) 184
BseGI GGATG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 113, 415
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 95, 229
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 2 cut(s) 95, 229
Bsp13I TCCGGA 1 cut(s) 184
BspACI CCGC 3 cut(s) 230, 286, 442
BspCNI CTCAG 2 cut(s) 112, 414
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 83, 407
Bst4CI ACNGT 2 cut(s) 50, 121
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 99, 401
BstF5I GGATG 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 82, 419
CviAII CATG 1 cut(s) 192
CviJI RGCY 5 cut(s) 69, 92, 104, 348, 408
CviKI_1 RGCY 5 cut(s) 69, 92, 104, 348, 408
DdeI CTNAG 2 cut(s) 99, 401
EciI GGCGGA 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 82, 419
EcoO109I RGGNCCY 2 cut(s) 82, 419
FaeI CATG 1 cut(s) 195
FaiI YATR 6 cut(s) 28, 107, 193, 281, 283, 380
FaqI GGGAC 2 cut(s) 95, 229
FatI CATG 1 cut(s) 191
FokI GGATG 1 cut(s) 343
HapII CCGG 1 cut(s) 185
Hin1II CATG 1 cut(s) 195
HinfI GANTC 3 cut(s) 75, 306, 399
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 166, 332
Hpy166II GTNNAC 2 cut(s) 257, 394
Hpy188III TCNNGA 2 cut(s) 185, 403
Hpy8I GTNNAC 2 cut(s) 257, 394
HpyAV CCTTC 3 cut(s) 25, 52, 234
HpyCH4III ACNGT 2 cut(s) 50, 121
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 99, 401
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 1 cut(s) 195
Kpn2I TCCGGA 1 cut(s) 184
LmnI GCTCC 1 cut(s) 405
LpnPI CCDG 7 cut(s) 24, 64, 86, 121, 198, 245, 388
LweI GCATC 1 cut(s) 321
MaeII ACGT 1 cut(s) 145
MboII GAAGA 2 cut(s) 34, 127
MluCI AATT 2 cut(s) 129, 161
MlyI GAGTC 2 cut(s) 315, 393
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 3 cut(s) 48, 59, 233
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 1 cut(s) 315
MspI CCGG 1 cut(s) 185
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 2 cut(s) 83, 407
NspI RCATGY 1 cut(s) 195
PciI ACATGT 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 75
PleI GAGTC 2 cut(s) 314, 393
PpsI GAGTC 2 cut(s) 314, 393
PpuMI RGGWCCY 2 cut(s) 82, 419
PscI ACATGT 1 cut(s) 191
Psp1406I AACGTT 1 cut(s) 145
Psp5II RGGWCCY 2 cut(s) 82, 419
PspN4I GGNNCC 2 cut(s) 83, 407
PspPI GGNCC 2 cut(s) 82, 419
PspPPI RGGWCCY 2 cut(s) 82, 419
SaqAI TTAA 1 cut(s) 315
Sau96I GGNCC 2 cut(s) 82, 419
SchI GAGTC 2 cut(s) 315, 393
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 2 cut(s) 82, 419
Sse9I AATT 2 cut(s) 129, 161
SsiI CCGC 3 cut(s) 230, 286, 442
TaaI ACNGT 2 cut(s) 50, 121
TaiI ACGT 1 cut(s) 148
TasI AATT 2 cut(s) 129, 161
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TspGWI ACGGA 2 cut(s) 78, 411
VpaK11BI GGWCC 2 cut(s) 82, 419
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.