Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

7387040 .. 7388327

Gene Structure 1288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCATCTGTAGGAGCAATCATCGGCTGCGAAGCGAATACTCTCAACTCGGGGTTGGGTCTGGGGTGGAACGTTGTTAGGGTTACATGCGCAGATGTGGATGCTTCCAACAAATCCTTTAAGGTTGAGGTGTGGTGGTTGGGTGACACTAACGTCGTTCAGCTTATGAGGAAATTGTTCCCTTCTGCATGGGTTGAAGCCCTGGCCTGCCTGGCTGCATGTAGTTTAGTAGAAAGGTTTGGTGTTGCGCCTCTTGCTTTTGAGACTGATCGTCAGCTGGCCATTTTTGCTATTAACTCGCAAGATGTGAATATGTCTTTGTTGGGCCTAGGGTCTATGAGGATATCTCTACTACTGTGTGATGGGAAGACATGTAAAGAGCTGAGGGTGATTCAGGAAGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.63

Weight (kDa)

4.88

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
Acc16I	TGCGCA	1 cut(s)	91
AclI	AACGTT	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	197
AhdI	GACNNNNNGTC	1 cut(s)	270
AjnI	CCWGG	2 cut(s)	201, 210
AluBI	AGCT	3 cut(s)	163, 277, 382
AluI	AGCT	3 cut(s)	163, 277, 382
Alw26I	GTCTC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	3 cut(s)	204, 279, 325
ApeKI	GCWGC	2 cut(s)	27, 215
Asp700I	GAANNNNTTC	1 cut(s)	176
AspA2I	CCTAGG	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	92, 250
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	155, 400
AvaI	CYCGRG	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	374
BbvCI	CCTCAGC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	14, 202
BccI	CCATC	2 cut(s)	13, 356
BciT130I	CCWGG	2 cut(s)	203, 212
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	28, 216
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	2 cut(s)	29, 217
Bme1390I	CCNGG	2 cut(s)	203, 212
BmeRI	GACNNNNNGTC	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	203, 212
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
Bpu10I	CCTNAGC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	201, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	203, 212
BseDI	CCNNGG	2 cut(s)	201, 328
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	14, 202
BshFI	GGCC	3 cut(s)	206, 281, 327
BsiHKCI	CYCGRG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	206, 281, 327
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	3 cut(s)	206, 281, 327
BspCNI	CTCAG	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	201, 328
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	203, 212
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	208, 279
BstDEI	CTNAG	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	92, 250
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 254, 287
BstNI	CCWGG	2 cut(s)	203, 212
BstNSI	RCATGY	3 cut(s)	90, 222, 375
BstSCI	CCNGG	2 cut(s)	201, 210
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	14, 202
BstV2I	GAAGAC	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	206, 281, 327
BtsCI	GGATG	1 cut(s)	106
Cac8I	GCNNGC	2 cut(s)	208, 279
CfoI	GCGC	2 cut(s)	92, 250
Cfr13I	GGNCC	1 cut(s)	325
CviAII	CATG	4 cut(s)	87, 189, 219, 372
CviJI	RGCY	9 cut(s)	27, 163, 200, 206, 215, 277, 281, 327, 382
CviKI_1	RGCY	9 cut(s)	27, 163, 200, 206, 215, 277, 281, 327, 382
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DrdI	GACNNNNNNGTC	1 cut(s)	152
DriI	GACNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	393
Eam1105I	GACNNNNNGTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	201, 210
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	4 cut(s)	90, 192, 222, 375
FaiI	YATR	7 cut(s)	88, 167, 190, 220, 314, 338, 373
FatI	CATG	4 cut(s)	86, 188, 218, 371
Fnu4HI	GCNGC	2 cut(s)	28, 216
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	28, 216
FspBI	CTAG	1 cut(s)	329
FspI	TGCGCA	1 cut(s)	91
GlaI	GCGC	2 cut(s)	91, 249
GluI	GCNGC	2 cut(s)	28, 216
HaeIII	GGCC	3 cut(s)	206, 281, 327
HhaI	GCGC	2 cut(s)	92, 250
Hin1II	CATG	4 cut(s)	90, 192, 222, 375
Hin6I	GCGC	2 cut(s)	90, 248
HinP1I	GCGC	2 cut(s)	90, 248
HinfI	GANTC	1 cut(s)	391
HphI	GGTGA	2 cut(s)	155, 400
Hpy188III	TCNNGA	1 cut(s)	395
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	2 cut(s)	72, 153
HpyCH4V	TGCA	2 cut(s)	188, 218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 254, 287
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	2 cut(s)	72, 153
Hsp92II	CATG	4 cut(s)	90, 192, 222, 375
HspAI	GCGC	2 cut(s)	90, 248
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	8 cut(s)	47, 188, 197, 215, 220, 224, 263, 380
Lsp1109I	GCAGC	2 cut(s)	14, 202
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	72, 153
MaeIII	GTNAC	2 cut(s)	82, 143
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	2 cut(s)	173, 403
MluNI	TGGCCA	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	5 cut(s)	121, 162, 261, 333, 378
Mox20I	TGGCCA	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	3 cut(s)	120, 294, 406
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	203, 212
MvaI	CCWGG	2 cut(s)	203, 212
MwoI	GCNNNNNNNGC	3 cut(s)	212, 254, 287
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	90, 192, 222, 375
NmuCI	GTSAC	1 cut(s)	143
NsbI	TGCGCA	1 cut(s)	91
NspI	RCATGY	3 cut(s)	90, 222, 375
PciI	ACATGT	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	29, 217
PscI	ACATGT	1 cut(s)	371
Psp1406I	AACGTT	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	201, 210
PspGI	CCWGG	2 cut(s)	201, 210
PspPI	GGNCC	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	120, 294, 406
SatI	GCNGC	2 cut(s)	28, 216
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	203, 212
SetI	ASST	8 cut(s)	75, 126, 132, 156, 165, 239, 279, 384
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	173, 403
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	201, 210
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	2 cut(s)	75, 156
TasI	AATT	2 cut(s)	173, 403
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	3 cut(s)	120, 294, 406
Tru9I	TTAA	3 cut(s)	120, 294, 406
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	27, 215
Tsp45I	GTSAC	1 cut(s)	143
XceI	RCATGY	3 cut(s)	90, 222, 375
XmaJI	CCTAGG	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.