Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005640.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

11049 .. 12066

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005640.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgaatgaagttaaagatgtattgaatgtcccgatcgttgaatttcatgaaaagtatttggggctccctactactataggaaggaataagaaagaagtattcaggaagttaaatgagcggcttgattttcatctccaaggttggcaagggaaattcctctcaaaagcggtgattgataatggtactcgttggcgaattgggaatggagcaagagtaagtgtagtgaaggatcggtggttgccttgtccaattggttttaaggtggtaagtccagttccaatcccagtccatcagaaggtggacagtttgttcacagcctcgggagcatggaatgtgcctcttgtgcaatctattttcctgcctcatgaagctgatatgattcttagtatgcctcttggattgagaattgtacctaacaagcttgtttggcattttaccaagtctggtgtttatagtgtgaaattaggatattgggtggctagagatttgcaatttcaaaaaaatgggacagtagttggttctagtcatagtggcaacaagtctttgtggaataaactatggagtctcaatctaccccacaaagtcaaagtcttcatgtggagggctgcacacaactacctccatgtggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

210

Amino Acids

23.98

Weight (kDa)

10.15

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	118
AciI	CCGC	2 cut(s)	118, 167
AclWI	GGATC	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	41, 152
AfaI	GTAC	2 cut(s)	184, 411
AfiI	CCNNNNNNNGG	2 cut(s)	295, 625
AgsI	TTSAA	3 cut(s)	25, 41, 497
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	2 cut(s)	371, 421
AluI	AGCT	2 cut(s)	371, 421
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	1 cut(s)	237
Ama87I	CYCGRG	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	2 cut(s)	41, 152
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	583
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	2 cut(s)	480, 522
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	2 cut(s)	119, 606
BlsI	GCNGC	2 cut(s)	120, 607
BmeT110I	CYCGRG	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	583
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	136, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 625
Bse1I	ACTGG	2 cut(s)	272, 284
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	136, 318
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	295, 625
BseNI	ACTGG	2 cut(s)	272, 284
BseXI	GCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	591
Bsh1285I	CGRYCG	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	319
BslFI	GGGAC	2 cut(s)	14, 520
BslI	CCNNNNNNNGG	2 cut(s)	295, 625
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	14, 520
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	33, 229
BspACI	CCGC	2 cut(s)	118, 167
BspHI	TCATGA	2 cut(s)	46, 364
BspLI	GGNNCC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	237
BsrBI	CCGCTC	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	272, 284
BssECI	CCNNGG	2 cut(s)	136, 318
BssMI	GATC	2 cut(s)	33, 229
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	305, 511
BstDEI	CTNAG	1 cut(s)	383
BstKTI	GATC	2 cut(s)	36, 232
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	2 cut(s)	33, 229
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 343, 427
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	583
CciI	TCATGA	2 cut(s)	46, 364
Csp6I	GTAC	2 cut(s)	183, 410
CviAII	CATG	5 cut(s)	47, 327, 365, 595, 623
CviJI	RGCY	7 cut(s)	64, 121, 317, 371, 421, 479, 605
CviKI_1	RGCY	7 cut(s)	64, 121, 317, 371, 421, 479, 605
CviQI	GTAC	2 cut(s)	183, 410
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	35, 231
DpnII	GATC	2 cut(s)	33, 229
Eco130I	CCWWGG	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	5 cut(s)	50, 330, 368, 598, 626
FaqI	GGGAC	2 cut(s)	14, 520
FatI	CATG	5 cut(s)	46, 326, 364, 594, 622
Fnu4HI	GCNGC	2 cut(s)	119, 606
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	119, 606
FspBI	CTAG	2 cut(s)	480, 522
GluI	GCNGC	2 cut(s)	119, 606
Hin1II	CATG	5 cut(s)	50, 330, 368, 598, 626
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	2 cut(s)	379, 562
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	301, 312
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	5 cut(s)	31, 47, 103, 321, 365
Hpy8I	GTNNAC	2 cut(s)	301, 312
HpyAV	CCTTC	3 cut(s)	75, 220, 289
HpyCH4III	ACNGT	2 cut(s)	305, 511
HpyCH4V	TGCA	3 cut(s)	346, 490, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 343, 427
HpyF3I	CTNAG	1 cut(s)	383
Hsp92II	CATG	5 cut(s)	50, 330, 368, 598, 626
Kzo9I	GATC	2 cut(s)	33, 229
LmnI	GCTCC	3 cut(s)	69, 206, 323
LpnPI	CCDG	5 cut(s)	88, 285, 297, 371, 429
Lsp1109I	GCAGC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	480, 522
MalI	GATC	2 cut(s)	35, 231
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	2 cut(s)	33, 229
MboII	GAAGA	1 cut(s)	583
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	7 cut(s)	41, 152, 195, 249, 405, 461, 491
MlyI	GAGTC	1 cut(s)	571
MnlI	CCTC	7 cut(s)	167, 328, 348, 372, 402, 594, 629
MseI	TTAA	3 cut(s)	12, 110, 258
MunI	CAATTG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	323, 343, 427
NdeII	GATC	2 cut(s)	33, 229
NlaIII	CATG	5 cut(s)	50, 330, 368, 598, 626
NlaIV	GGNNCC	1 cut(s)	65
PagI	TCATGA	2 cut(s)	46, 364
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	120, 607
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	65
PsrI	GAACNNNNNNTAC	2 cut(s)	258, 290
PvuI	CGATCG	1 cut(s)	36
RsaI	GTAC	2 cut(s)	184, 411
RsaNI	GTAC	2 cut(s)	183, 410
SaqAI	TTAA	3 cut(s)	12, 110, 258
SatI	GCNGC	2 cut(s)	119, 606
Sau3AI	GATC	2 cut(s)	33, 229
SchI	GAGTC	1 cut(s)	571
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	7 cut(s)	142, 264, 300, 373, 415, 423, 621
SfcI	CTRYAG	1 cut(s)	75
Sse9I	AATT	7 cut(s)	41, 152, 195, 249, 405, 461, 491
SsiI	CCGC	2 cut(s)	118, 167
SspMI	CTAG	2 cut(s)	480, 522
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	305, 511
TasI	AATT	7 cut(s)	41, 152, 195, 249, 405, 461, 491
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	12, 110, 258
Tru9I	TTAA	3 cut(s)	12, 110, 258
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	7 cut(s)	17, 21, 35, 63, 119, 381, 583
XapI	RAATTY	2 cut(s)	41, 152
XspI	CTAG	2 cut(s)	480, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.