ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1630 |
| Acc36I | ACCTGC | 1 cut(s) | 1976 |
| AccB1I | GGYRCC | 2 cut(s) | 1015, 1233 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 211, 890, 1948 |
| AccBSI | CCGCTC | 2 cut(s) | 217, 1358 |
| AccI | GTMKAC | 1 cut(s) | 537 |
| AccII | CGCG | 4 cut(s) | 26, 286, 699, 2675 |
| AccIII | TCCGGA | 1 cut(s) | 1620 |
| AciI | CCGC | 8 cut(s) | 105, 217, 286, 1231, 1358, 2202, 2693, 2943 |
| AclWI | GGATC | 3 cut(s) | 9, 78, 165 |
| AcoI | YGGCCR | 3 cut(s) | 202, 399, 729 |
| AcsI | RAATTY | 5 cut(s) | 2110, 2130, 2684, 2709, 2993 |
| AcuI | CTGAAG | 4 cut(s) | 159, 1005, 1713, 1881 |
| AcyI | GRCGYC | 2 cut(s) | 1016, 2814 |
| AdeI | CACNNNGTG | 1 cut(s) | 890 |
| AfaI | GTAC | 8 cut(s) | 374, 529, 621, 862, 1677, 2277, 2646, 3054 |
| AfeI | AGCGCT | 1 cut(s) | 613 |
| AflII | CTTAAG | 1 cut(s) | 1922 |
| AjnI | CCWGG | 5 cut(s) | 123, 334, 1794, 2183, 3002 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 484, 516, 1697, 1729 |
| Alw21I | GWGCWC | 1 cut(s) | 852 |
| Alw26I | GTCTC | 5 cut(s) | 36, 811, 1851, 2514, 2631 |
| AlwI | GGATC | 3 cut(s) | 9, 78, 165 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1591, 2492 |
| Ama87I | CYCGRG | 1 cut(s) | 1872 |
| Aor13HI | TCCGGA | 1 cut(s) | 1620 |
| Aor51HI | AGCGCT | 1 cut(s) | 613 |
| AoxI | GGCC | 6 cut(s) | 202, 236, 399, 729, 2612, 2761 |
| ApeKI | GCWGC | 2 cut(s) | 653, 2303 |
| ApoI | RAATTY | 5 cut(s) | 2110, 2130, 2684, 2709, 2993 |
| AspLEI | GCGC | 7 cut(s) | 614, 699, 1018, 1159, 1614, 2233, 2322 |
| AspS9I | GGNCC | 3 cut(s) | 1939, 2761, 2870 |
| AsuC2I | CCSGG | 1 cut(s) | 746 |
| AsuHPI | GGTGA | 4 cut(s) | 995, 1525, 1882, 2899 |
| AsuII | TTCGAA | 1 cut(s) | 660 |
| AvaI | CYCGRG | 1 cut(s) | 1872 |
| AvaII | GGWCC | 2 cut(s) | 1939, 2870 |
| BaeGI | GKGCMC | 1 cut(s) | 876 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 852, 885 |
| BalI | TGGCCA | 3 cut(s) | 204, 401, 731 |
| BanI | GGYRCC | 2 cut(s) | 1015, 1233 |
| BanII | GRGCYC | 3 cut(s) | 1660, 2091, 2140 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3036, 3068 |
| BauI | CACGAG | 1 cut(s) | 952 |
| BbsI | GAAGAC | 1 cut(s) | 581 |
| Bbv12I | GWGCWC | 1 cut(s) | 852 |
| BbvCI | CCTCAGC | 1 cut(s) | 2092 |
| BbvI | GCAGC | 2 cut(s) | 640, 2290 |
| BccI | CCATC | 8 cut(s) | 338, 643, 1674, 1678, 1717, 1799, 2265, 2861 |
| BceAI | ACGGC | 3 cut(s) | 914, 1367, 2038 |
| BciT130I | CCWGG | 5 cut(s) | 125, 336, 1796, 2185, 3004 |
| BcnI | CCSGG | 1 cut(s) | 746 |
| BcoDI | GTCTC | 5 cut(s) | 36, 811, 1851, 2514, 2631 |
| BfaI | CTAG | 6 cut(s) | 1353, 1637, 2097, 2583, 2730, 2804 |
| BfoI | RGCGCY | 3 cut(s) | 615, 1019, 2234 |
| BfrI | CTTAAG | 1 cut(s) | 1922 |
| BfuAI | ACCTGC | 1 cut(s) | 1976 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1184 |
| BisI | GCNGC | 3 cut(s) | 654, 2304, 2694 |
| BlsI | GCNGC | 3 cut(s) | 655, 2305, 2695 |
| BmcAI | AGTACT | 1 cut(s) | 374 |
| Bme1390I | CCNGG | 6 cut(s) | 125, 336, 746, 1796, 2185, 3004 |
| Bme18I | GGWCC | 2 cut(s) | 1939, 2870 |
| BmeT110I | CYCGRG | 1 cut(s) | 1872 |
| BmgT120I | GGNCC | 3 cut(s) | 1939, 2761, 2870 |
| BmiI | GGNNCC | 4 cut(s) | 1017, 1235, 1702, 1940 |
| BmrFI | CCNGG | 6 cut(s) | 125, 336, 746, 1796, 2185, 3004 |
| BmrI | ACTGGG | 2 cut(s) | 794, 1849 |
| BmsI | GCATC | 7 cut(s) | 106, 477, 765, 834, 1942, 2785, 2930 |
| BmuI | ACTGGG | 2 cut(s) | 794, 1849 |
| BpiI | GAAGAC | 1 cut(s) | 581 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 935, 967 |
| BpmI | CTGGAG | 4 cut(s) | 317, 1611, 2629, 2655 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2092 |
| Bpu14I | TTCGAA | 1 cut(s) | 660 |
| BpuEI | CTTGAG | 4 cut(s) | 1592, 2386, 2574, 2900 |
| BpuMI | CCSGG | 1 cut(s) | 746 |
| Bsa29I | ATCGAT | 1 cut(s) | 568 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1373 |
| BsaHI | GRCGYC | 2 cut(s) | 1016, 2814 |
| BsaI | GGTCTC | 1 cut(s) | 811 |
| BsaJI | CCNNGG | 5 cut(s) | 64, 335, 1980, 2184, 2569 |
| BsaWI | WCCGGW | 2 cut(s) | 865, 1620 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1514, 1544, 2628, 2658 |
| Bse118I | RCCGGY | 1 cut(s) | 238 |
| Bse1I | ACTGG | 5 cut(s) | 380, 789, 1855, 2718, 2933 |
| Bse3DI | GCAATG | 3 cut(s) | 777, 1610, 1739 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1373 |
| BseAI | TCCGGA | 1 cut(s) | 1620 |
| BseBI | CCWGG | 5 cut(s) | 125, 336, 1796, 2185, 3004 |
| BseCI | ATCGAT | 1 cut(s) | 568 |
| BseDI | CCNNGG | 5 cut(s) | 64, 335, 1980, 2184, 2569 |
| BseGI | GGATG | 5 cut(s) | 911, 1666, 1709, 1791, 1957 |
| BseJI | GATNNNNATC | 1 cut(s) | 1373 |
| BseMI | GCAATG | 3 cut(s) | 777, 1610, 1739 |
| BseMII | CTCAG | 5 cut(s) | 620, 933, 2106, 2340, 2984 |
| BseNI | ACTGG | 5 cut(s) | 380, 789, 1855, 2718, 2933 |
| BseRI | GAGGAG | 3 cut(s) | 1839, 2864, 2897 |
| BseSI | GKGCMC | 1 cut(s) | 876 |
| BseXI | GCAGC | 2 cut(s) | 640, 2290 |
| BseYI | CCCAGC | 2 cut(s) | 264, 2439 |
| BsgI | GTGCAG | 1 cut(s) | 990 |
| Bsh1236I | CGCG | 4 cut(s) | 26, 286, 699, 2675 |
| Bsh1285I | CGRYCG | 1 cut(s) | 745 |
| BshFI | GGCC | 6 cut(s) | 204, 238, 401, 731, 2614, 2763 |
| BshNI | GGYRCC | 2 cut(s) | 1015, 1233 |
| BshVI | ATCGAT | 1 cut(s) | 568 |
| BsiEI | CGRYCG | 1 cut(s) | 745 |
| BsiHKAI | GWGCWC | 1 cut(s) | 852 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1872 |
| BsiSI | CCGG | 4 cut(s) | 239, 745, 866, 1621 |
| BsiWI | CGTACG | 1 cut(s) | 2644 |
| BslFI | GGGAC | 3 cut(s) | 1205, 1952, 2457 |
| BsmAI | GTCTC | 5 cut(s) | 36, 811, 1851, 2514, 2631 |
| BsmFI | GGGAC | 3 cut(s) | 1205, 1952, 2457 |
| BsmI | GAATGC | 4 cut(s) | 1053, 1180, 1577, 1614 |
| BsnI | GGCC | 6 cut(s) | 204, 238, 401, 731, 2614, 2763 |
| Bso31I | GGTCTC | 1 cut(s) | 811 |
| BsoBI | CYCGRG | 1 cut(s) | 1872 |
| Bsp119I | TTCGAA | 1 cut(s) | 660 |
| Bsp1286I | GDGCHC | 5 cut(s) | 852, 876, 1660, 2091, 2140 |
| Bsp13I | TCCGGA | 1 cut(s) | 1620 |
| Bsp1407I | TGTACA | 1 cut(s) | 527 |
| Bsp143I | GATC | 4 cut(s) | 14, 83, 157, 1567 |
| Bsp19I | CCATGG | 2 cut(s) | 64, 2569 |
| BspACI | CCGC | 8 cut(s) | 105, 217, 286, 1231, 1358, 2202, 2693, 2943 |
| BspANI | GGCC | 6 cut(s) | 204, 238, 401, 731, 2614, 2763 |
| BspCNI | CTCAG | 5 cut(s) | 619, 934, 2105, 2339, 2983 |
| BspDI | ATCGAT | 1 cut(s) | 568 |
| BspEI | TCCGGA | 1 cut(s) | 1620 |
| BspFNI | CGCG | 4 cut(s) | 26, 286, 699, 2675 |
| BspLI | GGNNCC | 4 cut(s) | 1017, 1235, 1702, 1940 |
| BspMI | ACCTGC | 1 cut(s) | 1976 |
| BspPI | GGATC | 3 cut(s) | 9, 78, 165 |
| BspQI | GCTCTTC | 3 cut(s) | 135, 285, 2406 |
| BspT104I | TTCGAA | 1 cut(s) | 660 |
| BspT107I | GGYRCC | 2 cut(s) | 1015, 1233 |
| BspTI | CTTAAG | 1 cut(s) | 1922 |
| BspTNI | GGTCTC | 1 cut(s) | 811 |
| BsrBI | CCGCTC | 2 cut(s) | 217, 1358 |
| BsrDI | GCAATG | 3 cut(s) | 777, 1610, 1739 |
| BsrFI | RCCGGY | 1 cut(s) | 238 |
| BsrGI | TGTACA | 1 cut(s) | 527 |
| BsrI | ACTGG | 5 cut(s) | 380, 789, 1855, 2718, 2933 |
| BssAI | RCCGGY | 1 cut(s) | 238 |
| BssECI | CCNNGG | 5 cut(s) | 64, 335, 1980, 2184, 2569 |
| BssMI | GATC | 4 cut(s) | 14, 83, 157, 1567 |
| BssNAI | GTATAC | 1 cut(s) | 538 |
| BssNI | GRCGYC | 2 cut(s) | 1016, 2814 |
| BssSI | CACGAG | 1 cut(s) | 952 |
| BssT1I | CCWWGG | 3 cut(s) | 64, 1980, 2569 |
| Bst1107I | GTATAC | 1 cut(s) | 538 |
| Bst2BI | CACGAG | 1 cut(s) | 952 |
| Bst2UI | CCWGG | 5 cut(s) | 125, 336, 1796, 2185, 3004 |
| Bst4CI | ACNGT | 3 cut(s) | 535, 580, 2502 |
| Bst6I | CTCTTC | 7 cut(s) | 135, 196, 285, 1113, 1295, 1900, 2406 |
| BstACI | GRCGYC | 2 cut(s) | 1016, 2814 |
| BstAFI | CTTAAG | 1 cut(s) | 1922 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 880 |
| BstAUI | TGTACA | 1 cut(s) | 527 |
| BstBI | TTCGAA | 1 cut(s) | 660 |
| BstC8I | GCNNGC | 8 cut(s) | 206, 276, 350, 354, 768, 1596, 2385, 2765 |
| BstDEI | CTNAG | 7 cut(s) | 606, 942, 1166, 1684, 2092, 2326, 2970 |
| BstDSI | CCRYGG | 2 cut(s) | 64, 2569 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2601 |
| BstF5I | GGATG | 5 cut(s) | 911, 1666, 1709, 1791, 1957 |
| BstFNI | CGCG | 4 cut(s) | 26, 286, 699, 2675 |
| BstH2I | RGCGCY | 3 cut(s) | 615, 1019, 2234 |
| BstHHI | GCGC | 7 cut(s) | 614, 699, 1018, 1159, 1614, 2233, 2322 |
| BstKTI | GATC | 4 cut(s) | 17, 86, 160, 1570 |
| BstMAI | GTCTC | 5 cut(s) | 36, 811, 1851, 2514, 2631 |
| BstMBI | GATC | 4 cut(s) | 14, 83, 157, 1567 |
| BstMCI | CGRYCG | 1 cut(s) | 745 |
| BstNI | CCWGG | 5 cut(s) | 125, 336, 1796, 2185, 3004 |
| BstNSI | RCATGY | 5 cut(s) | 352, 2029, 2285, 2387, 2700 |
| BstSCI | CCNGG | 6 cut(s) | 123, 334, 744, 1794, 2183, 3002 |
| BstSLI | GKGCMC | 1 cut(s) | 876 |
| BstUI | CGCG | 4 cut(s) | 26, 286, 699, 2675 |
| BstV1I | GCAGC | 2 cut(s) | 640, 2290 |
| BstV2I | GAAGAC | 1 cut(s) | 581 |
| BstX2I | RGATCY | 2 cut(s) | 83, 157 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 817 |
| BstYI | RGATCY | 2 cut(s) | 83, 157 |
| BstZ17I | GTATAC | 1 cut(s) | 538 |
| Bsu15I | ATCGAT | 1 cut(s) | 568 |
| BsuRI | GGCC | 6 cut(s) | 204, 238, 401, 731, 2614, 2763 |
| BsuTUI | ATCGAT | 1 cut(s) | 568 |
| BtgI | CCRYGG | 2 cut(s) | 64, 2569 |
| BtgZI | GCGATG | 2 cut(s) | 714, 2243 |
| BtsCI | GGATG | 5 cut(s) | 911, 1666, 1709, 1791, 1957 |
| BtsI | GCAGTG | 2 cut(s) | 1786, 1910 |
| BtsIMutI | CAGTG | 4 cut(s) | 939, 1786, 1910, 2926 |
| BveI | ACCTGC | 1 cut(s) | 1976 |
| Cac8I | GCNNGC | 8 cut(s) | 206, 276, 350, 354, 768, 1596, 2385, 2765 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1591, 2492 |
| CfoI | GCGC | 7 cut(s) | 614, 699, 1018, 1159, 1614, 2233, 2322 |
| Cfr10I | RCCGGY | 1 cut(s) | 238 |
| Cfr13I | GGNCC | 3 cut(s) | 1939, 2761, 2870 |
| ClaI | ATCGAT | 1 cut(s) | 568 |
| CseI | GACGC | 2 cut(s) | 2552, 2822 |
| Csp6I | GTAC | 8 cut(s) | 373, 528, 620, 861, 1676, 2276, 2645, 3053 |
| CviQI | GTAC | 8 cut(s) | 373, 528, 620, 861, 1676, 2276, 2645, 3053 |
| DdeI | CTNAG | 7 cut(s) | 606, 942, 1166, 1684, 2092, 2326, 2970 |
| DinI | GGCGCC | 1 cut(s) | 1017 |
| DpnI | GATC | 4 cut(s) | 16, 85, 159, 1569 |
| DpnII | GATC | 4 cut(s) | 14, 83, 157, 1567 |
| DraI | TTTAAA | 3 cut(s) | 423, 1215, 1302 |
| DraIII | CACNNNGTG | 1 cut(s) | 890 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1630 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1630 |
| EaeI | YGGCCR | 3 cut(s) | 202, 399, 729 |
| Eam1104I | CTCTTC | 7 cut(s) | 135, 196, 285, 1113, 1295, 1900, 2406 |
| EarI | CTCTTC | 7 cut(s) | 135, 196, 285, 1113, 1295, 1900, 2406 |
| Eco130I | CCWWGG | 3 cut(s) | 64, 1980, 2569 |
| Eco147I | AGGCCT | 1 cut(s) | 2614 |
| Eco24I | GRGCYC | 3 cut(s) | 1660, 2091, 2140 |
| Eco31I | GGTCTC | 1 cut(s) | 811 |
| Eco32I | GATATC | 1 cut(s) | 2048 |
| Eco47I | GGWCC | 2 cut(s) | 1939, 2870 |
| Eco47III | AGCGCT | 1 cut(s) | 613 |
| Eco57I | CTGAAG | 4 cut(s) | 159, 1005, 1713, 1881 |
| Eco88I | CYCGRG | 1 cut(s) | 1872 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2601 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2761 |
| EcoRI | GAATTC | 3 cut(s) | 2110, 2684, 2709 |
| EcoRII | CCWGG | 5 cut(s) | 123, 334, 1794, 2183, 3002 |
| EcoRV | GATATC | 1 cut(s) | 2048 |
| EcoT14I | CCWWGG | 3 cut(s) | 64, 1980, 2569 |
| EcoT22I | ATGCAT | 1 cut(s) | 2389 |
| EcoT38I | GRGCYC | 3 cut(s) | 1660, 2091, 2140 |
| EgeI | GGCGCC | 1 cut(s) | 1017 |
| EheI | GGCGCC | 1 cut(s) | 1017 |
| ErhI | CCWWGG | 3 cut(s) | 64, 1980, 2569 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1296, 1328, 2811, 2843 |
| FaqI | GGGAC | 3 cut(s) | 1205, 1952, 2457 |
| FauI | CCCGC | 2 cut(s) | 279, 1351 |
| FblI | GTMKAC | 1 cut(s) | 537 |
| Fnu4HI | GCNGC | 3 cut(s) | 654, 2304, 2694 |
| FokI | GGATG | 5 cut(s) | 918, 1653, 1696, 1778, 1964 |
| FriOI | GRGCYC | 3 cut(s) | 1660, 2091, 2140 |
| Fsp4HI | GCNGC | 3 cut(s) | 654, 2304, 2694 |
| FspBI | CTAG | 6 cut(s) | 1353, 1637, 2097, 2583, 2730, 2804 |
| GlaI | GCGC | 7 cut(s) | 613, 698, 1017, 1158, 1613, 2232, 2321 |
| GluI | GCNGC | 3 cut(s) | 654, 2304, 2694 |
| GsaI | CCCAGC | 2 cut(s) | 268, 2443 |
| GsuI | CTGGAG | 4 cut(s) | 317, 1611, 2629, 2655 |
| HaeII | RGCGCY | 3 cut(s) | 615, 1019, 2234 |
| HaeIII | GGCC | 6 cut(s) | 204, 238, 401, 731, 2614, 2763 |
| HapII | CCGG | 4 cut(s) | 239, 745, 866, 1621 |
| HgaI | GACGC | 2 cut(s) | 2552, 2822 |
| HhaI | GCGC | 7 cut(s) | 614, 699, 1018, 1159, 1614, 2233, 2322 |
| Hin1I | GRCGYC | 2 cut(s) | 1016, 2814 |
| Hin6I | GCGC | 7 cut(s) | 612, 697, 1016, 1157, 1612, 2231, 2320 |
| HinP1I | GCGC | 7 cut(s) | 612, 697, 1016, 1157, 1612, 2231, 2320 |
| HincII | GTYRAC | 1 cut(s) | 1869 |
| HindII | GTYRAC | 1 cut(s) | 1869 |
| HindIII | AAGCTT | 1 cut(s) | 276 |
| HinfI | GANTC | 9 cut(s) | 21, 220, 634, 1426, 1458, 1624, 1631, 2639, 2932 |
| HpaII | CCGG | 4 cut(s) | 239, 745, 866, 1621 |
| HphI | GGTGA | 4 cut(s) | 995, 1525, 1882, 2899 |
| Hpy166II | GTNNAC | 4 cut(s) | 538, 1869, 2276, 2890 |
| Hpy8I | GTNNAC | 4 cut(s) | 538, 1869, 2276, 2890 |
| HpyCH4III | ACNGT | 3 cut(s) | 535, 580, 2502 |
| HpyCH4IV | ACGT | 4 cut(s) | 148, 591, 1218, 2340 |
| HpyF3I | CTNAG | 7 cut(s) | 606, 942, 1166, 1684, 2092, 2326, 2970 |
| HpySE526I | ACGT | 4 cut(s) | 148, 591, 1218, 2340 |
| Hsp92I | GRCGYC | 2 cut(s) | 1016, 2814 |
| HspAI | GCGC | 7 cut(s) | 612, 697, 1016, 1157, 1612, 2231, 2320 |
| KasI | GGCGCC | 1 cut(s) | 1015 |
| Kpn2I | TCCGGA | 1 cut(s) | 1620 |
| Kzo9I | GATC | 4 cut(s) | 14, 83, 157, 1567 |
| LguI | GCTCTTC | 3 cut(s) | 135, 285, 2406 |
| LmnI | GCTCC | 6 cut(s) | 214, 298, 1447, 2599, 2740, 3036 |
| Lsp1109I | GCAGC | 2 cut(s) | 640, 2290 |
| LweI | GCATC | 7 cut(s) | 106, 477, 765, 834, 1942, 2785, 2930 |
| MaeI | CTAG | 6 cut(s) | 1353, 1637, 2097, 2583, 2730, 2804 |
| MaeII | ACGT | 4 cut(s) | 148, 591, 1218, 2340 |
| MaeIII | GTNAC | 8 cut(s) | 167, 894, 1024, 1123, 1386, 1988, 2924, 2998 |
| MalI | GATC | 4 cut(s) | 16, 85, 159, 1569 |
| MbiI | CCGCTC | 2 cut(s) | 217, 1358 |
| MboI | GATC | 4 cut(s) | 14, 83, 157, 1567 |
| MfeI | CAATTG | 1 cut(s) | 558 |
| MflI | RGATCY | 2 cut(s) | 83, 157 |
| MhlI | GDGCHC | 5 cut(s) | 852, 876, 1660, 2091, 2140 |
| MlsI | TGGCCA | 3 cut(s) | 204, 401, 731 |
| MluNI | TGGCCA | 3 cut(s) | 204, 401, 731 |
| Mly113I | GGCGCC | 1 cut(s) | 1016 |
| MlyI | GAGTC | 5 cut(s) | 30, 1618, 1640, 2633, 2926 |
| MmeI | TCCRAC | 4 cut(s) | 535, 1318, 1748, 2043 |
| Mox20I | TGGCCA | 3 cut(s) | 204, 401, 731 |
| Mph1103I | ATGCAT | 1 cut(s) | 2389 |
| MroI | TCCGGA | 1 cut(s) | 1620 |
| MscI | TGGCCA | 3 cut(s) | 204, 401, 731 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1326, 2434, 2988 |
| Msp20I | TGGCCA | 3 cut(s) | 204, 401, 731 |
| MspCI | CTTAAG | 1 cut(s) | 1922 |
| MspI | CCGG | 4 cut(s) | 239, 745, 866, 1621 |
| MspR9I | CCNGG | 6 cut(s) | 125, 336, 746, 1796, 2185, 3004 |
| MunI | CAATTG | 1 cut(s) | 558 |
| Mva1269I | GAATGC | 4 cut(s) | 1053, 1180, 1577, 1614 |
| MvaI | CCWGG | 5 cut(s) | 125, 336, 1796, 2185, 3004 |
| MvnI | CGCG | 4 cut(s) | 26, 286, 699, 2675 |
| NarI | GGCGCC | 1 cut(s) | 1016 |
| NciI | CCSGG | 1 cut(s) | 746 |
| NcoI | CCATGG | 2 cut(s) | 64, 2569 |
| NdeII | GATC | 4 cut(s) | 14, 83, 157, 1567 |
| NlaIV | GGNNCC | 4 cut(s) | 1017, 1235, 1702, 1940 |
| NmuCI | GTSAC | 3 cut(s) | 167, 1988, 2924 |
| NsiI | ATGCAT | 1 cut(s) | 2389 |
| NspI | RCATGY | 5 cut(s) | 352, 2029, 2285, 2387, 2700 |
| NspV | TTCGAA | 1 cut(s) | 660 |
| PaeI | GCATGC | 2 cut(s) | 352, 2387 |
| PceI | AGGCCT | 1 cut(s) | 2614 |
| PciSI | GCTCTTC | 3 cut(s) | 135, 285, 2406 |
| PctI | GAATGC | 4 cut(s) | 1053, 1180, 1577, 1614 |
| PfeI | GAWTC | 4 cut(s) | 220, 634, 1426, 1458 |
| Pfl23II | CGTACG | 1 cut(s) | 2644 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 211, 890, 1948 |
| PkrI | GCNGC | 3 cut(s) | 655, 2305, 2695 |
| PleI | GAGTC | 5 cut(s) | 29, 1618, 1639, 2633, 2926 |
| PluTI | GGCGCC | 1 cut(s) | 1019 |
| PpsI | GAGTC | 5 cut(s) | 29, 1618, 1639, 2633, 2926 |
| Psp6I | CCWGG | 5 cut(s) | 123, 334, 1794, 2183, 3002 |
| PspFI | CCCAGC | 2 cut(s) | 264, 2439 |
| PspGI | CCWGG | 5 cut(s) | 123, 334, 1794, 2183, 3002 |
| PspLI | CGTACG | 1 cut(s) | 2644 |
| PspN4I | GGNNCC | 4 cut(s) | 1017, 1235, 1702, 1940 |
| PspPI | GGNCC | 3 cut(s) | 1939, 2761, 2870 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1591, 2492 |
| PsuI | RGATCY | 2 cut(s) | 83, 157 |
| RsaI | GTAC | 8 cut(s) | 374, 529, 621, 862, 1677, 2277, 2646, 3054 |
| RsaNI | GTAC | 8 cut(s) | 373, 528, 620, 861, 1676, 2276, 2645, 3053 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1326, 2434, 2988 |
| SapI | GCTCTTC | 3 cut(s) | 135, 285, 2406 |
| SatI | GCNGC | 3 cut(s) | 654, 2304, 2694 |
| Sau3AI | GATC | 4 cut(s) | 14, 83, 157, 1567 |
| Sau96I | GGNCC | 3 cut(s) | 1939, 2761, 2870 |
| ScaI | AGTACT | 1 cut(s) | 374 |
| SchI | GAGTC | 5 cut(s) | 30, 1618, 1640, 2633, 2926 |
| ScrFI | CCNGG | 6 cut(s) | 125, 336, 746, 1796, 2185, 3004 |
| SduI | GDGCHC | 5 cut(s) | 852, 876, 1660, 2091, 2140 |
| SfaNI | GCATC | 7 cut(s) | 106, 477, 765, 834, 1942, 2785, 2930 |
| SfoI | GGCGCC | 1 cut(s) | 1017 |
| SfuI | TTCGAA | 1 cut(s) | 660 |
| SinI | GGWCC | 2 cut(s) | 1939, 2870 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1326, 2434, 2988 |
| SmlI | CTYRAG | 5 cut(s) | 1571, 1922, 2401, 2589, 2879 |
| SmoI | CTYRAG | 5 cut(s) | 1571, 1922, 2401, 2589, 2879 |
| SphI | GCATGC | 2 cut(s) | 352, 2387 |
| SseBI | AGGCCT | 1 cut(s) | 2614 |
| SsiI | CCGC | 8 cut(s) | 105, 217, 286, 1231, 1358, 2202, 2693, 2943 |
| SspDI | GGCGCC | 1 cut(s) | 1015 |
| SspI | AATATT | 2 cut(s) | 111, 1959 |
| SspMI | CTAG | 6 cut(s) | 1353, 1637, 2097, 2583, 2730, 2804 |
| StuI | AGGCCT | 1 cut(s) | 2614 |
| StyD4I | CCNGG | 6 cut(s) | 123, 334, 744, 1794, 2183, 3002 |
| StyI | CCWWGG | 3 cut(s) | 64, 1980, 2569 |
| TaaI | ACNGT | 3 cut(s) | 535, 580, 2502 |
| TaiI | ACGT | 4 cut(s) | 151, 594, 1221, 2343 |
| TaqI | TCGA | 6 cut(s) | 568, 660, 1194, 1409, 1468, 2512 |
| TaqII | GACCGA | 1 cut(s) | 2023 |
| TatI | WGTACW | 4 cut(s) | 372, 527, 2275, 3052 |
| TauI | GCSGC | 1 cut(s) | 2696 |
| TfiI | GAWTC | 4 cut(s) | 220, 634, 1426, 1458 |
| TscAI | CASTG | 4 cut(s) | 946, 1786, 1910, 2933 |
| TseFI | GTSAC | 3 cut(s) | 167, 1988, 2924 |
| TseI | GCWGC | 2 cut(s) | 653, 2303 |
| Tsp45I | GTSAC | 3 cut(s) | 167, 1988, 2924 |
| TspGWI | ACGGA | 2 cut(s) | 2632, 2753 |
| TspRI | CASTG | 4 cut(s) | 946, 1786, 1910, 2933 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 211, 890, 1948 |
| Vha464I | CTTAAG | 1 cut(s) | 1922 |
| VpaK11BI | GGWCC | 2 cut(s) | 1939, 2870 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2601 |
| XapI | RAATTY | 5 cut(s) | 2110, 2130, 2684, 2709, 2993 |
| XbaI | TCTAGA | 2 cut(s) | 1352, 2803 |
| XceI | RCATGY | 5 cut(s) | 352, 2029, 2285, 2387, 2700 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1716 |
| XmiI | GTMKAC | 1 cut(s) | 537 |
| XspI | CTAG | 6 cut(s) | 1353, 1637, 2097, 2583, 2730, 2804 |
| ZrmI | AGTACT | 1 cut(s) | 374 |
| Zsp2I | ATGCAT | 1 cut(s) | 2389 |