Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

4948135 .. 4949220

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAAAATTGTTCCATGCCATGAACGTTATTTGGGATTGCCTATAGTGACTGGAAGAAATAAAAAGAAAGTCTTCAAGGGTGTGGCTGATCGGGTGTGGCAAAAAATTCAAGGTTGGGAAGGTAAACTGCTTTCCAAGGGTGGTAAGGAGGTGTTGATCAAAGCTGTGGCTCAGTCAATACCTACTTATACTATGAGTGTTTTCCAGTTACCAGCAGGGATTTGTAAGGAAATTAACAAGCATCTAGCAAGATACTGGTGGGGCAATTTTGGTGGAAAAGGTATACATTGGAGGAGGTGGGATGCACTTTGTGTGCCGAAGGGAGAAGGTGGCTTGGGTTTTAGGGAGTTTCAGTGTTTTAATCAAGCTTTGGTTGGAAAAATTGGTTGGAGGCTAATTCAAGATGAGGAGTCTTTGGTTGGTCAGATGTTGAAGGCTAAATACTACCCTAATAGTTCTTTTTTGGAGGCTGTTATTGGGAGGAATCCTTCCAGTATTTGGAGGGCTGTGATGTGGGGTAAACAACTTCTAACTAAAGGTCTTCGGTGGAGGGTAAGCAATGGGGCCGAAATCCGAGTTTTTCAAGACCCTTGGGTTCCTGGAATACCTGATTTTAGAATTGCATGGAAGAATGGCTGTGATTGGAATATGAGAGTGAATGAGCTGATTTCGGTGTCCGGTTTGTGGGATATGCATAGGCTGGAGAAAGTAGCTACAATGCAGGAAGTGGAGGCTATGCTTAGTATCCCTATTGCACAATCAACGTGTCGGGATAAATTGATTTGGAATCAAAATAAGCAAGGGAAGTTTTCAGTTAAGAGTGCTTATTGGTTGGCGAAGAAAGAGAGTAATCGCTCCACACCGATAGCTTCAGTGTATTGGAAACATCTTTGGAAACACAAAGTCCCACCAAAGATGAATCATTTTTTATGGAGGTGTTCGATGGGATTTATTCCATGCATGTGGTCGTTGTATCAGAGGTATATTGTTCAAAGTCCTTTATGTCCGAGGTGCCAAGCTGCTGATGATACGCCCTTGCCGCAACCTGGTCTTGTTCGTTTTGTGTTGCGGTGTTGGAGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

362

Amino Acids

41.74

Weight (kDa)

9.95

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	270 - 344	2.1e-09	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1011
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	2 cut(s)	1040, 1069
AclI	AACGTT	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	855
AdeI	CACNNNGTG	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	498, 684, 1046
AflIII	ACRYGT	1 cut(s)	764
AgsI	TTSAA	6 cut(s)	76, 110, 401, 433, 584, 992
AjnI	CCWGG	2 cut(s)	598, 1045
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AluBI	AGCT	6 cut(s)	164, 368, 664, 713, 869, 1019
AluI	AGCT	6 cut(s)	164, 368, 664, 713, 869, 1019
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	1 cut(s)	1019
ApoI	RAATTY	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	1011
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbsI	GAAGAC	2 cut(s)	64, 533
BbvI	GCAGC	1 cut(s)	1006
BccI	CCATC	1 cut(s)	937
BciT130I	CCWGG	2 cut(s)	600, 1047
BciVI	GTATCC	1 cut(s)	755
BclI	TGATCA	1 cut(s)	156
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	755
BisI	GCNGC	2 cut(s)	1020, 1040
BlsI	GCNGC	2 cut(s)	1021, 1041
Bme1390I	CCNGG	2 cut(s)	600, 1047
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	3 cut(s)	565, 597, 1013
BmrFI	CCNGG	2 cut(s)	600, 1047
BmsI	GCATC	2 cut(s)	250, 292
BpiI	GAAGAC	2 cut(s)	64, 533
BpmI	CTGGAG	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	135, 590, 1007
BsaWI	WCCGGW	1 cut(s)	677
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	498, 684, 1046
Bse1I	ACTGG	4 cut(s)	55, 205, 260, 492
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	2 cut(s)	600, 1047
BseDI	CCNNGG	3 cut(s)	135, 590, 1007
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	3 cut(s)	498, 684, 1046
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	4 cut(s)	55, 205, 260, 492
BseRI	GAGGAG	2 cut(s)	307, 422
BseXI	GCAGC	1 cut(s)	1006
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	1011
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	3 cut(s)	498, 684, 1046
BsmFI	GGGAC	1 cut(s)	890
BsnI	GGCC	1 cut(s)	566
Bsp143I	GATC	2 cut(s)	88, 156
BspACI	CCGC	2 cut(s)	1040, 1069
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	565, 597, 1013
BspT107I	GGYRCC	1 cut(s)	1011
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	4 cut(s)	55, 205, 260, 492
BssECI	CCNNGG	3 cut(s)	135, 590, 1007
BssMI	GATC	2 cut(s)	88, 156
BssNAI	GTATAC	1 cut(s)	284
BssT1I	CCWWGG	2 cut(s)	135, 590
Bst1107I	GTATAC	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	600, 1047
BstDEI	CTNAG	2 cut(s)	171, 740
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	91, 159
BstMBI	GATC	2 cut(s)	88, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	1039
BstNI	CCWGG	2 cut(s)	600, 1047
BstNSI	RCATGY	1 cut(s)	964
BstSCI	CCNGG	2 cut(s)	598, 1045
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	1006
BstV2I	GAAGAC	2 cut(s)	64, 533
BstXI	CCANNNNNNTGG	1 cut(s)	963
BstZ17I	GTATAC	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	359, 879
Cfr13I	GGNCC	1 cut(s)	564
CsiI	ACCWGGT	1 cut(s)	1045
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	5 cut(s)	15, 20, 624, 957, 961
DdeI	CTNAG	2 cut(s)	171, 740
DpnI	GATC	2 cut(s)	90, 158
DpnII	GATC	2 cut(s)	88, 156
DraIII	CACNNNGTG	1 cut(s)	311
Eco130I	CCWWGG	2 cut(s)	135, 590
Eco57I	CTGAAG	1 cut(s)	855
EcoRII	CCWGG	2 cut(s)	598, 1045
EcoT14I	CCWWGG	2 cut(s)	135, 590
EcoT22I	ATGCAT	2 cut(s)	696, 962
ErhI	CCWWGG	2 cut(s)	135, 590
FaeI	CATG	5 cut(s)	18, 23, 627, 960, 964
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	5 cut(s)	14, 19, 623, 956, 960
FbaI	TGATCA	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	1020, 1040
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	1020, 1040
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	2 cut(s)	1020, 1040
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	1 cut(s)	678
Hin1II	CATG	5 cut(s)	18, 23, 627, 960, 964
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	4 cut(s)	410, 484, 787, 919
HpaII	CCGG	1 cut(s)	678
Hpy166II	GTNNAC	3 cut(s)	125, 284, 521
Hpy188I	TCNGA	4 cut(s)	426, 575, 978, 1008
Hpy188III	TCNNGA	3 cut(s)	401, 584, 770
Hpy8I	GTNNAC	3 cut(s)	125, 284, 521
HpyAV	CCTTC	5 cut(s)	113, 313, 320, 427, 498
HpyCH4IV	ACGT	2 cut(s)	25, 764
HpyCH4V	TGCA	6 cut(s)	305, 623, 694, 721, 755, 960
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1039
HpyF3I	CTNAG	2 cut(s)	171, 740
HpySE526I	ACGT	2 cut(s)	25, 764
Hsp92II	CATG	5 cut(s)	18, 23, 627, 960, 964
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	88, 156
LmnI	GCTCC	1 cut(s)	860
Lsp1109I	GCAGC	1 cut(s)	1006
LweI	GCATC	2 cut(s)	250, 292
MabI	ACCWGGT	1 cut(s)	1045
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	2 cut(s)	25, 764
MaeIII	GTNAC	2 cut(s)	46, 207
MalI	GATC	2 cut(s)	90, 158
MboI	GATC	2 cut(s)	88, 156
MboII	GAAGA	5 cut(s)	64, 66, 533, 640, 850
MluCI	AATT	8 cut(s)	6, 105, 231, 265, 381, 396, 618, 776
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	3 cut(s)	355, 368, 1055
Mph1103I	ATGCAT	2 cut(s)	696, 962
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	234, 360, 816
MslI	CAYNNNNRTG	1 cut(s)	961
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	2 cut(s)	600, 1047
MvaI	CCWGG	2 cut(s)	600, 1047
MwoI	GCNNNNNNNGC	1 cut(s)	1039
NdeII	GATC	2 cut(s)	88, 156
NlaIII	CATG	5 cut(s)	18, 23, 627, 960, 964
NlaIV	GGNNCC	3 cut(s)	565, 597, 1013
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	2 cut(s)	696, 962
NspI	RCATGY	1 cut(s)	964
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	484, 787, 919
PflMI	CCANNNNNTGG	1 cut(s)	498
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	2 cut(s)	1021, 1041
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	598, 1045
PspGI	CCWGG	2 cut(s)	598, 1045
PspN4I	GGNNCC	3 cut(s)	565, 597, 1013
PspPI	GGNCC	1 cut(s)	564
RseI	CAYNNNNRTG	1 cut(s)	961
SaqAI	TTAA	3 cut(s)	234, 360, 816
SatI	GCNGC	2 cut(s)	1020, 1040
Sau3AI	GATC	2 cut(s)	88, 156
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	600, 1047
SexAI	ACCWGGT	1 cut(s)	1045
SfaNI	GCATC	2 cut(s)	250, 292
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	961
Sse9I	AATT	8 cut(s)	6, 105, 231, 265, 381, 396, 618, 776
SsiI	CCGC	2 cut(s)	1040, 1069
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	598, 1045
StyI	CCWWGG	2 cut(s)	135, 590
TaiI	ACGT	2 cut(s)	28, 767
TaqI	TCGA	1 cut(s)	941
TasI	AATT	8 cut(s)	6, 105, 231, 265, 381, 396, 618, 776
TauI	GCSGC	1 cut(s)	1042
TfiI	GAWTC	3 cut(s)	484, 787, 919
Tru1I	TTAA	3 cut(s)	234, 360, 816
Tru9I	TTAA	3 cut(s)	234, 360, 816
TscAI	CASTG	2 cut(s)	359, 879
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	1019
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	17, 36, 932
TspRI	CASTG	2 cut(s)	359, 879
Van91I	CCANNNNNTGG	1 cut(s)	498
XapI	RAATTY	1 cut(s)	105
XceI	RCATGY	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	2 cut(s)	696, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.