Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

19713544 .. 19714694

Gene Structure 1151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATATGGAAATCTATTTTGTGGGGTCGTCAGGTTATTGAGGATGGTCTGATTTGGAGGGTGGGCAATGGAGCTTCTATCCGTGTTTTCCAAGATAGGTGGATTCCAAAACCATTTACTTTCAAGCCGTTGTTGGCTAGAGGGCTGGATTGGAATACTACAGTCTCTAACCTTCTAACTGCTTCTGGTTCATGGGATTTACCACTGTTAGAGCAACATTTTAGCTTGGAAGATCAAGATATTATTTCTGGCATCGCCTTGGTATCAGTCTCACAGCGGGGGGATAGCAAATATTGGTTTTTCTCAAAGAACAGGAAATATACCATTAATACTGGGTATTGTGTGGCGGTAATGAGGATTTTGGAGTGGGGGGATCGGATCAGAGTGCTCAGGAAGGTTTTTGGATGCGAATTTGGAAGCTTGCAGTCCCCAACAAAATTAAAATGCGAATTTGGAGGGCAAATTACACGGTTGGATAACATGGTGGAAAACACGATGGAAAGGCTGGCAGTGTTCAAATCTTGTGAGGAGCGGTCCAAGCTCCCCTTCGTACCTCAACAGGTCCATTGGTTGAAACCACGGGTAAATACTTTTACTCTTAACTGTGATGGGGCTGTGGGTCGTGGGCAAAGTGGTAGGGGTCTGGGGGGCTGCTGTAGTGATCATGACGGAAACTTTATATGTGGGTTTGCTTCTTTTGGTCCACCTGGTCTAGATGTTTTGGGCACTGAGTTGGTGGCTGTCCGGGAAGGTTTATTGATGATGGGATACATGGGTTTTACTCGGTTTACCATTGGTCTTGATTCTCAAGAAGCTATTTATTCTCAACGATGGGTTGGATTGGTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

284

Amino Acids

31.89

Weight (kDa)

8.62

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	532
AciI	CCGC	3 cut(s)	277, 347, 532
AclWI	GGATC	2 cut(s)	381, 386
AcsI	RAATTY	2 cut(s)	410, 449
AfaI	GTAC	1 cut(s)	552
AgsI	TTSAA	3 cut(s)	124, 517, 574
AjnI	CCWGG	1 cut(s)	706
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AluBI	AGCT	5 cut(s)	74, 225, 420, 541, 815
AluI	AGCT	5 cut(s)	74, 225, 420, 541, 815
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	169, 274
AlwI	GGATC	2 cut(s)	381, 386
ApeKI	GCWGC	1 cut(s)	651
ApoI	RAATTY	2 cut(s)	410, 449
AseI	ATTAAT	1 cut(s)	327
AspS9I	GGNCC	3 cut(s)	534, 562, 701
AsuC2I	CCSGG	1 cut(s)	746
AvaII	GGWCC	3 cut(s)	534, 562, 701
BaeGI	GKGCMC	1 cut(s)	728
BaeI	ACNNNNGTAYC	2 cut(s)	760, 793
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	638
BccI	CCATC	5 cut(s)	38, 490, 602, 757, 825
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	708
BciVI	GTATCC	1 cut(s)	761
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	2 cut(s)	169, 274
BfaI	CTAG	2 cut(s)	138, 713
BfmI	CTRYAG	2 cut(s)	159, 655
BfuI	GTATCC	1 cut(s)	761
BisI	GCNGC	1 cut(s)	652
BlsI	GCNGC	1 cut(s)	653
Bme1390I	CCNGG	2 cut(s)	708, 746
Bme18I	GGWCC	3 cut(s)	534, 562, 701
BmgT120I	GGNCC	3 cut(s)	534, 562, 701
BmrFI	CCNGG	2 cut(s)	708, 746
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	2 cut(s)	261, 395
BmuI	ACTGGG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	792
BpuMI	CCSGG	1 cut(s)	746
BsaJI	CCNNGG	2 cut(s)	258, 578
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	2 cut(s)	258, 578
BseGI	GGATG	2 cut(s)	49, 410
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	403, 720
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	745
BslFI	GGGAC	1 cut(s)	412
BsmAI	GTCTC	2 cut(s)	169, 274
BsmFI	GGGAC	1 cut(s)	412
Bsp1286I	GDGCHC	2 cut(s)	390, 728
Bsp143I	GATC	4 cut(s)	232, 373, 378, 661
BspACI	CCGC	3 cut(s)	277, 347, 532
BspCNI	CTCAG	2 cut(s)	402, 721
BspHI	TCATGA	1 cut(s)	664
BspPI	GGATC	2 cut(s)	381, 386
BsrBI	CCGCTC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	258, 578
BssMI	GATC	4 cut(s)	232, 373, 378, 661
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	4 cut(s)	163, 207, 471, 605
BstC8I	GCNNGC	2 cut(s)	422, 507
BstDEI	CTNAG	2 cut(s)	389, 729
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	49, 410
BstKTI	GATC	4 cut(s)	235, 376, 381, 664
BstMAI	GTCTC	2 cut(s)	169, 274
BstMBI	GATC	4 cut(s)	232, 373, 378, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstNI	CCWGG	1 cut(s)	708
BstSCI	CCNGG	2 cut(s)	706, 744
BstSFI	CTRYAG	2 cut(s)	159, 655
BstSLI	GKGCMC	1 cut(s)	728
BstV1I	GCAGC	1 cut(s)	638
BsuI	GTATCC	1 cut(s)	761
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	49, 410
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	3 cut(s)	203, 516, 726
Cac8I	GCNNGC	2 cut(s)	422, 507
CciI	TCATGA	1 cut(s)	664
Cfr13I	GGNCC	3 cut(s)	534, 562, 701
CsiI	ACCWGGT	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	551
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	4 cut(s)	192, 481, 665, 772
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	2 cut(s)	389, 729
DpnI	GATC	4 cut(s)	234, 375, 380, 663
DpnII	GATC	4 cut(s)	232, 373, 378, 661
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	3 cut(s)	534, 562, 701
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	4 cut(s)	195, 484, 668, 775
FaiI	YATR	8 cut(s)	7, 193, 321, 482, 666, 680, 682, 773
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	4 cut(s)	191, 480, 664, 771
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	1 cut(s)	652
FokI	GGATG	2 cut(s)	56, 417
Fsp4HI	GCNGC	1 cut(s)	652
FspBI	CTAG	2 cut(s)	138, 713
GluI	GCNGC	1 cut(s)	652
HapII	CCGG	1 cut(s)	745
Hin1II	CATG	4 cut(s)	195, 484, 668, 775
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	2 cut(s)	103, 803
HpaII	CCGG	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	704, 789
Hpy188I	TCNGA	3 cut(s)	51, 378, 383
Hpy188III	TCNNGA	6 cut(s)	236, 391, 665, 713, 800, 809
Hpy8I	GTNNAC	2 cut(s)	704, 789
HpyAV	CCTTC	4 cut(s)	182, 388, 556, 743
HpyCH4III	ACNGT	4 cut(s)	163, 207, 471, 605
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpyF3I	CTNAG	2 cut(s)	389, 729
Hsp92II	CATG	4 cut(s)	195, 484, 668, 775
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	4 cut(s)	232, 373, 378, 661
LmnI	GCTCC	3 cut(s)	71, 529, 546
Lsp1109I	GCAGC	1 cut(s)	638
LweI	GCATC	2 cut(s)	261, 395
MabI	ACCWGGT	1 cut(s)	706
MaeI	CTAG	2 cut(s)	138, 713
MalI	GATC	4 cut(s)	234, 375, 380, 663
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	4 cut(s)	232, 373, 378, 661
MboII	GAAGA	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	390, 728
MluCI	AATT	4 cut(s)	410, 437, 449, 462
MmeI	TCCRAC	2 cut(s)	453, 817
MnlI	CCTC	7 cut(s)	34, 51, 134, 348, 449, 520, 564
MseI	TTAA	3 cut(s)	327, 440, 600
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	1 cut(s)	745
MspR9I	CCNGG	2 cut(s)	708, 746
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	1 cut(s)	538
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	4 cut(s)	232, 373, 378, 661
NlaIII	CATG	4 cut(s)	195, 484, 668, 775
PagI	TCATGA	1 cut(s)	664
PfeI	GAWTC	2 cut(s)	103, 803
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	1 cut(s)	653
PshBI	ATTAAT	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	706
PspPI	GGNCC	3 cut(s)	534, 562, 701
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SaqAI	TTAA	3 cut(s)	327, 440, 600
SatI	GCNGC	1 cut(s)	652
Sau3AI	GATC	4 cut(s)	232, 373, 378, 661
Sau96I	GGNCC	3 cut(s)	534, 562, 701
ScrFI	CCNGG	2 cut(s)	708, 746
SduI	GDGCHC	2 cut(s)	390, 728
SexAI	ACCWGGT	1 cut(s)	706
SfaNI	GCATC	2 cut(s)	261, 395
SfcI	CTRYAG	2 cut(s)	159, 655
SinI	GGWCC	3 cut(s)	534, 562, 701
SmlI	CTYRAG	1 cut(s)	807
SmoI	CTYRAG	1 cut(s)	807
Sse9I	AATT	4 cut(s)	410, 437, 449, 462
SsiI	CCGC	3 cut(s)	277, 347, 532
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	2 cut(s)	138, 713
StyD4I	CCNGG	2 cut(s)	706, 744
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	4 cut(s)	163, 207, 471, 605
TasI	AATT	4 cut(s)	410, 437, 449, 462
TfiI	GAWTC	2 cut(s)	103, 803
Tru1I	TTAA	3 cut(s)	327, 440, 600
Tru9I	TTAA	3 cut(s)	327, 440, 600
TscAI	CASTG	3 cut(s)	210, 516, 733
TseI	GCWGC	1 cut(s)	651
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	2 cut(s)	71, 684
TspRI	CASTG	3 cut(s)	210, 516, 733
VpaK11BI	GGWCC	3 cut(s)	534, 562, 701
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	2 cut(s)	410, 449
XbaI	TCTAGA	1 cut(s)	712
XspI	CTAG	2 cut(s)	138, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.