Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003052.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

32769 .. 33335

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003052.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgatcattttcccttatatttttgagtttatatctaattttataaaaaagaaatctatactaagtgaccagaaattacaggggtggcagttcaaactcttatctaaggcaaggaaaacggtgttgatcaaggccgttgtgcaagccatcccgtcctacactacgtcggtgttcagattgtccaagggtatttgccgaacctatcagtctaaggttggtaagtactggtggggtaatggtggtaagaagaaaggaatatactggtgcaagtgggaggtcctatccaagaataaattagcaggaggcttaggtttcagggacattgagtgctttaatcaggccctactagcgaagactttgtggcggattatgctccatcatgattttttggttaatcatatcttacagttgaagtatggcattggaggtaattgggcagcagctcaagtgggaagaaagtcatcatttatttggaggagtcttgtgtggcgaaatgaattgttgtgtgcaggaattcgttggagagttgggaatggtgaaactacaagagtctgggaggataagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

188

Amino Acids

21.86

Weight (kDa)

10.23

Isoelectric Point (pI)

20.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AciI	CCGC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	513
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	94, 412
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
AoxI	GGCC	2 cut(s)	132, 339
ApeKI	GCWGC	2 cut(s)	437, 440
ApoI	RAATTY	1 cut(s)	513
AspS9I	GGNCC	2 cut(s)	277, 340
AsuHPI	GGTGA	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	449, 452
BccI	CCATC	2 cut(s)	155, 384
BceAI	ACGGC	1 cut(s)	119
BclI	TGATCA	2 cut(s)	3, 126
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	438, 441
BlsI	GCNGC	2 cut(s)	439, 442
BmcAI	AGTACT	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 340
BpiI	GAAGAC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	1 cut(s)	548
Bse1I	ACTGG	2 cut(s)	230, 266
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	230, 266
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	449, 452
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	134, 341
BslFI	GGGAC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	134, 341
Bsp143I	GATC	2 cut(s)	3, 126
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	2 cut(s)	134, 341
BspHI	TCATGA	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	230, 266
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	3, 126
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	121, 408
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	4 cut(s)	62, 105, 210, 307
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	6, 129
BstMBI	GATC	2 cut(s)	3, 126
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 370
BstV1I	GCAGC	2 cut(s)	449, 452
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	134, 341
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	144
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	277, 340
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	5 cut(s)	134, 146, 306, 341, 443
CviKI_1	RGCY	5 cut(s)	134, 146, 306, 341, 443
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	4 cut(s)	62, 105, 210, 307
DpnI	GATC	2 cut(s)	5, 128
DpnII	GATC	2 cut(s)	3, 126
EciI	GGCGGA	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	277
EcoO109I	RGGNCCY	2 cut(s)	277, 340
EcoRI	GAATTC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	383
FaiI	YATR	9 cut(s)	18, 32, 44, 59, 259, 371, 381, 399, 417
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	1 cut(s)	379
FbaI	TGATCA	2 cut(s)	3, 126
Fnu4HI	GCNGC	2 cut(s)	438, 441
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	438, 441
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	2 cut(s)	438, 441
HaeIII	GGCC	2 cut(s)	134, 341
Hin1II	CATG	1 cut(s)	383
HinfI	GANTC	2 cut(s)	478, 549
HphI	GGTGA	1 cut(s)	548
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	121, 408
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	142, 267, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 370
HpyF3I	CTNAG	4 cut(s)	62, 105, 210, 307
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	383
Ksp22I	TGATCA	2 cut(s)	3, 126
Kzo9I	GATC	2 cut(s)	3, 126
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	9 cut(s)	65, 83, 211, 247, 285, 301, 323, 495, 538
Lsp1109I	GCAGC	2 cut(s)	449, 452
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	5, 128
MboI	GATC	2 cut(s)	3, 126
MboII	GAAGA	3 cut(s)	259, 364, 465
MluCI	AATT	6 cut(s)	37, 74, 293, 430, 497, 513
MlyI	GAGTC	2 cut(s)	487, 558
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	5 cut(s)	268, 296, 419, 468, 550
MseI	TTAA	2 cut(s)	333, 393
MwoI	GCNNNNNNNGC	2 cut(s)	347, 370
NdeII	GATC	2 cut(s)	3, 126
NlaIII	CATG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	65
PagI	TCATGA	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	439, 442
PleI	GAGTC	2 cut(s)	486, 557
PpsI	GAGTC	2 cut(s)	486, 557
PpuMI	RGGWCCY	1 cut(s)	277
PsiI	TTATAA	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	277, 340
PspPPI	RGGWCCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	333, 393
SatI	GCNGC	2 cut(s)	438, 441
Sau3AI	GATC	2 cut(s)	3, 126
Sau96I	GGNCC	2 cut(s)	277, 340
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	2 cut(s)	487, 558
SetI	ASST	7 cut(s)	167, 203, 216, 279, 313, 430, 445
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	6 cut(s)	37, 74, 293, 430, 497, 513
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	121, 408
TaiI	ACGT	1 cut(s)	167
TasI	AATT	6 cut(s)	37, 74, 293, 430, 497, 513
TatI	WGTACW	1 cut(s)	222
Tru1I	TTAA	2 cut(s)	333, 393
Tru9I	TTAA	2 cut(s)	333, 393
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	437, 440
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	513
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.