Rroxscaffold_3G00252810

ribonuclease H protein At1g65750-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
46851057 .. 46854209
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252810.1

Sequence Viewer

Length: 495 bp
ATGTTGAAAGCCAAATACTTTCCTAAATGTAGTTTCCTATTAGCTGAAATGGGGTCCAATCCTTCTAGTATTTGGCGTGGTATTGTATGGGGGAGAAACTTGCTCTTAAAAGGTTTACGGTGGAGGGTTTCTAATGGAAGGAGTATAAGGGTATTCATGGACCCTTGGGTTCTGGATATTGAAGGTTTTGGAGTGACGTGGAAGCGGGGGTTGGATAGAAATATGTTGGTATCCTATTTAATTACGGAGTACGGAGCATGGAATTTGCGGTTGTTAGAACGGGTTGGAACGGTTCAAGAAGTTGATGCCATCTTGACAATACCTCTTACTCGTGTGGATGGACATGATAGATTGATCTGGAATCAAAATAAGAATGGAAGGTATTCGGTTAAGAGTGCGTATTGGATGGCTATGAAAGATGCTAGGGAGAGATTGAATGGGCGGCGAGGTGGTGCGGTGGTCACCGAGCACCGGCGACATCTTTGGAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

19.17

Weight (kDa)

10.62

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 205, 268, 442, 455
AcsI RAATTY 1 cut(s) 262
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 471
AgsI TTSAA 4 cut(s) 7, 182, 296, 436
AjiI CACGTC 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw21I GWGCWC 1 cut(s) 471
ApoI RAATTY 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 382
AspS9I GGNCC 2 cut(s) 54, 160
AsuHPI GGTGA 1 cut(s) 454
AvaII GGWCC 2 cut(s) 54, 160
BauI CACGAG 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 471
BccI CCATC 3 cut(s) 317, 332, 400
BciVI GTATCC 1 cut(s) 241
BfaI CTAG 2 cut(s) 66, 423
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 444
Bme18I GGWCC 2 cut(s) 54, 160
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 54, 160
BmiI GGNNCC 2 cut(s) 55, 162
BmsI GCATC 2 cut(s) 295, 409
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse118I RCCGGY 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 343, 411
BseLI CCNNNNNNNGG 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 471
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 1 cut(s) 354
BspACI CCGC 4 cut(s) 205, 268, 442, 455
BspLI GGNNCC 2 cut(s) 55, 162
BsrFI RCCGGY 1 cut(s) 471
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 120, 292
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 2 cut(s) 343, 411
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BstPI GGTNACC 1 cut(s) 460
BsuI GTATCC 1 cut(s) 241
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 2 cut(s) 343, 411
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 54, 160
Csp6I GTAC 1 cut(s) 250
CviAII CATG 3 cut(s) 157, 258, 344
CviJI RGCY 3 cut(s) 11, 44, 410
CviKI_1 RGCY 3 cut(s) 11, 44, 410
CviQI GTAC 1 cut(s) 250
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 54, 160
Eco91I GGTNACC 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 3 cut(s) 160, 261, 347
FaiI YATR 7 cut(s) 88, 146, 158, 224, 259, 345, 413
FatI CATG 3 cut(s) 156, 257, 343
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 443
FokI GGATG 2 cut(s) 350, 418
Fsp4HI GCNGC 1 cut(s) 443
FspBI CTAG 2 cut(s) 66, 423
GluI GCNGC 1 cut(s) 443
HapII CCGG 1 cut(s) 472
Hin1II CATG 3 cut(s) 160, 261, 347
HinfI GANTC 1 cut(s) 361
HpaII CCGG 1 cut(s) 472
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 1 cut(s) 116
Hpy188III TCNNGA 4 cut(s) 173, 296, 313, 358
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 4 cut(s) 72, 132, 176, 372
HpyCH4III ACNGT 2 cut(s) 120, 292
HpyCH4IV ACGT 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 3 cut(s) 160, 261, 347
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 3 cut(s) 158, 343, 485
LweI GCATC 2 cut(s) 295, 409
MaeI CTAG 2 cut(s) 66, 423
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 193, 460
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 2 cut(s) 240, 262
MmeI TCCRAC 2 cut(s) 192, 265
MnlI CCTC 3 cut(s) 117, 333, 440
MroXI GAANNNNTTC 1 cut(s) 382
MseI TTAA 3 cut(s) 107, 239, 390
MspI CCGG 1 cut(s) 472
NdeII GATC 1 cut(s) 354
NlaIII CATG 3 cut(s) 160, 261, 347
NlaIV GGNNCC 2 cut(s) 55, 162
NmuCI GTSAC 2 cut(s) 193, 460
PdmI GAANNNNTTC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 1 cut(s) 444
PspEI GGTNACC 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 55, 162
PspPI GGNCC 2 cut(s) 54, 160
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 3 cut(s) 107, 239, 390
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 2 cut(s) 54, 160
SduI GDGCHC 1 cut(s) 471
SetI ASST 7 cut(s) 46, 115, 187, 200, 325, 383, 451
SfaNI GCATC 2 cut(s) 295, 409
SgrAI CRCCGGYG 1 cut(s) 471
SinI GGWCC 2 cut(s) 54, 160
Sse9I AATT 2 cut(s) 240, 262
SsiI CCGC 4 cut(s) 205, 268, 442, 455
SspMI CTAG 2 cut(s) 66, 423
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 120, 292
TaiI ACGT 1 cut(s) 200
TasI AATT 2 cut(s) 240, 262
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 3 cut(s) 107, 239, 390
Tru9I TTAA 3 cut(s) 107, 239, 390
TseFI GTSAC 2 cut(s) 193, 460
Tsp45I GTSAC 2 cut(s) 193, 460
TspDTI ATGAA 2 cut(s) 145, 428
TspGWI ACGGA 2 cut(s) 260, 267
VpaK11BI GGWCC 2 cut(s) 54, 160
XapI RAATTY 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 382
XspI CTAG 2 cut(s) 66, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.