Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000267.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

27441 .. 30177

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000267.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

atggttcaagctattccatcttactcaatgagtgttttccggatgcctgtgactttgagccatgaactatcgggtttatcagccagaaacaagttgaaaggtgggctaggctttcgagattttgttgatttcaatcaagcactcttggccaaacaatgttggagattgttctctcttcctgatttgttggttacgaaggtgtataaagggcgctactatccctcttcctctcttctatctgcatctgttgggagatcaacctcactgatttggagatccctcctttggggtagggaattatttgcttctggtctacgatggagggtgggtgatggttggtcgattttcatctttcgtgatgcttggattcctattccatacacatttcgcatttactccccaccaaatttgctcttcaattctcttgtttctgagttgattacagtggatggttattggaacattgaattaatacatcacagcttttgggcaagagaggttgaagcaattctctccattcctctgccgatagctcctattccagatagattgtgttggcattacacaagaaatggattatatatggtcaagagtggttatcaattggcacaaaattgcagatttcgaaatgaggggggcgaaggcagttctaactcacaagaagacccggtttggaagtatgtgtggaatctgaacgcttcagctgttacaaaggtctttttttggcgtgcaatccatgacatcctgccttgtgcttttaatttacatcgacgacatctgttgttttctctggtctgttcccgcggtaaaatgggctatgaaactacgatacatgccttatggtcctgctctaaagccaaagaagtttggctgctcacttcttttcgcactgctgcgggaggatggaaacatggcacttttagagaacttttcagatttggtatttctgttctttctaaatcagaattgatctttgtgttaatgtgttgtcgtcgaatctggcaagcatggaatgaagaaattttccagaacaaatatatctctgcttctgttctcttctcacatattcaagcttcagttgtagagtgggtttccctacacactcggcctcctcaacattcaccttcaacaggtaattctgacagatgggttctgatgctccagcccaacaagtggagtgacgcgctggaaggcttgggtgggcagcacgcgcagcagggagaacaggggagaaggaagacgcgcccacttgcgctggagagagaaatatcactacaggtggtctgctccagtgggccccgcaaggcgaaggttgtctgctgccgaccattgcgtgtcccaacggtcactaaattcacggctgagatcgcttttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

459

Amino Acids

52.6

Weight (kDa)

9.75

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1173
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	4 cut(s)	804, 1184, 1211, 1243
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	4 cut(s)	802, 804, 896, 1300
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	406, 1020, 1352
AcuI	CTGAAG	2 cut(s)	684, 1059
AfiI	CCNNNNNNNGG	4 cut(s)	285, 286, 1130, 1173
AgsI	TTSAA	8 cut(s)	8, 97, 133, 418, 467, 503, 1070, 1128
AluBI	AGCT	5 cut(s)	11, 483, 533, 704, 1073
AluI	AGCT	5 cut(s)	11, 483, 533, 704, 1073
AlwI	GGATC	1 cut(s)	270
Aor13HI	TCCGGA	1 cut(s)	39
AoxI	GGCC	3 cut(s)	147, 1106, 1295
ApaI	GGGCCC	1 cut(s)	1299
ApeKI	GCWGC	5 cut(s)	871, 893, 1204, 1213, 1320
ApoI	RAATTY	3 cut(s)	406, 1020, 1352
AseI	ATTAAT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	5 cut(s)	213, 1186, 1213, 1245, 1255
AspS9I	GGNCC	3 cut(s)	843, 1295, 1296
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	341, 1113
AsuII	TTCGAA	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	843
BaeGI	GKGCMC	1 cut(s)	1299
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	1299
BbsI	GAAGAC	2 cut(s)	669, 1244
BbvI	GCAGC	5 cut(s)	858, 880, 1216, 1225, 1307
BccI	CCATC	6 cut(s)	25, 312, 326, 443, 897, 1140
BceAI	ACGGC	1 cut(s)	1374
BcnI	CCSGG	1 cut(s)	668
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	1274
BfoI	RGCGCY	1 cut(s)	214
BisI	GCNGC	5 cut(s)	872, 894, 1205, 1214, 1321
BlsI	GCNGC	5 cut(s)	873, 895, 1206, 1215, 1322
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	1 cut(s)	843
BmgT120I	GGNCC	3 cut(s)	843, 1295, 1296
BmiI	GGNNCC	2 cut(s)	1297, 1298
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	4 cut(s)	33, 251, 349, 1146
BpiI	GAAGAC	2 cut(s)	669, 1244
BpmI	CTGGAG	3 cut(s)	1145, 1273, 1277
Bpu14I	TTCGAA	1 cut(s)	625
BpuMI	CCSGG	1 cut(s)	668
BsaBI	GATNNNNATC	2 cut(s)	132, 347
BsaJI	CCNNGG	1 cut(s)	802
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 1093, 1123
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 286, 1130, 1173
Bse1I	ACTGG	1 cut(s)	1290
Bse3DI	GCAATG	1 cut(s)	1328
Bse8I	GATNNNNATC	2 cut(s)	132, 347
BseAI	TCCGGA	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	4 cut(s)	48, 454, 741, 908
BseJI	GATNNNNATC	2 cut(s)	132, 347
BseLI	CCNNNNNNNGG	4 cut(s)	285, 286, 1130, 1173
BseMI	GCAATG	1 cut(s)	1328
BseMII	CTCAG	2 cut(s)	423, 1353
BseNI	ACTGG	1 cut(s)	1290
BseRI	GAGGAG	1 cut(s)	1101
BseSI	GKGCMC	1 cut(s)	1299
BseXI	GCAGC	5 cut(s)	858, 880, 1216, 1225, 1307
Bsh1236I	CGCG	4 cut(s)	804, 1184, 1211, 1243
BshFI	GGCC	3 cut(s)	149, 1108, 1297
BsiSI	CCGG	2 cut(s)	40, 668
BslFI	GGGAC	1 cut(s)	1322
BslI	CCNNNNNNNGG	4 cut(s)	285, 286, 1130, 1173
BsmFI	GGGAC	1 cut(s)	1322
BsnI	GGCC	3 cut(s)	149, 1108, 1297
Bsp119I	TTCGAA	1 cut(s)	625
Bsp120I	GGGCCC	1 cut(s)	1295
Bsp1286I	GDGCHC	1 cut(s)	1299
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	254, 275, 969, 1365
BspACI	CCGC	4 cut(s)	802, 804, 896, 1300
BspANI	GGCC	3 cut(s)	149, 1108, 1297
BspCNI	CTCAG	2 cut(s)	424, 1354
BspEI	TCCGGA	1 cut(s)	39
BspFNI	CGCG	4 cut(s)	804, 1184, 1211, 1243
BspLI	GGNNCC	2 cut(s)	1297, 1298
BspPI	GGATC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	419
BspT104I	TTCGAA	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	1328
BsrI	ACTGG	1 cut(s)	1290
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	4 cut(s)	254, 275, 969, 1365
Bst4CI	ACNGT	2 cut(s)	445, 1345
Bst6I	CTCTTC	5 cut(s)	180, 229, 237, 419, 1061
BstBI	TTCGAA	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	729, 1005, 1209
BstDEI	CTNAG	2 cut(s)	432, 1362
BstDSI	CCRYGG	1 cut(s)	802
BstENI	CCTNNNNNAGG	1 cut(s)	1128
BstF5I	GGATG	4 cut(s)	48, 454, 741, 908
BstFNI	CGCG	4 cut(s)	804, 1184, 1211, 1243
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	5 cut(s)	213, 1186, 1213, 1245, 1255
BstKTI	GATC	4 cut(s)	257, 278, 972, 1368
BstMBI	GATC	4 cut(s)	254, 275, 969, 1365
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 1210, 1213, 1367
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	1 cut(s)	1274
BstSLI	GKGCMC	1 cut(s)	1299
BstUI	CGCG	4 cut(s)	804, 1184, 1211, 1243
BstV1I	GCAGC	5 cut(s)	858, 880, 1216, 1225, 1307
BstV2I	GAAGAC	2 cut(s)	669, 1244
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	149, 1108, 1297
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	4 cut(s)	48, 454, 741, 908
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	4 cut(s)	263, 450, 888, 1297
Cac8I	GCNNGC	3 cut(s)	729, 1005, 1209
CfoI	GCGC	5 cut(s)	213, 1186, 1213, 1245, 1255
Cfr13I	GGNCC	3 cut(s)	843, 1295, 1296
Cfr42I	CCGCGG	1 cut(s)	805
CseI	GACGC	2 cut(s)	1190, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	5 cut(s)	62, 737, 833, 911, 1008
DdeI	CTNAG	2 cut(s)	432, 1362
DpnI	GATC	4 cut(s)	256, 277, 971, 1367
DpnII	GATC	4 cut(s)	254, 275, 969, 1365
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	5 cut(s)	180, 229, 237, 419, 1061
EarI	CTCTTC	5 cut(s)	180, 229, 237, 419, 1061
Eco24I	GRGCYC	1 cut(s)	1299
Eco47I	GGWCC	1 cut(s)	843
Eco57I	CTGAAG	2 cut(s)	684, 1059
EcoNI	CCTNNNNNAGG	1 cut(s)	1128
EcoO109I	RGGNCCY	1 cut(s)	1296
EcoT38I	GRGCYC	1 cut(s)	1299
FaeI	CATG	5 cut(s)	65, 740, 836, 914, 1011
FaqI	GGGAC	1 cut(s)	1322
FatI	CATG	5 cut(s)	61, 736, 832, 910, 1007
FauI	CCCGC	3 cut(s)	809, 889, 1307
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	5 cut(s)	872, 894, 1205, 1214, 1321
FokI	GGATG	4 cut(s)	55, 461, 728, 915
FriOI	GRGCYC	1 cut(s)	1299
Fsp4HI	GCNGC	5 cut(s)	872, 894, 1205, 1214, 1321
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	5 cut(s)	212, 1185, 1212, 1244, 1254
GluI	GCNGC	5 cut(s)	872, 894, 1205, 1214, 1321
GsuI	CTGGAG	3 cut(s)	1145, 1273, 1277
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	3 cut(s)	149, 1108, 1297
HapII	CCGG	2 cut(s)	40, 668
HgaI	GACGC	2 cut(s)	1190, 1249
HhaI	GCGC	5 cut(s)	213, 1186, 1213, 1245, 1255
Hin1II	CATG	5 cut(s)	65, 740, 836, 914, 1011
Hin6I	GCGC	5 cut(s)	211, 1184, 1211, 1243, 1253
HinP1I	GCGC	5 cut(s)	211, 1184, 1211, 1243, 1253
HindIII	AAGCTT	1 cut(s)	1071
HinfI	GANTC	3 cut(s)	367, 688, 996
HpaII	CCGG	2 cut(s)	40, 668
HphI	GGTGA	2 cut(s)	341, 1113
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	6 cut(s)	433, 693, 935, 964, 1141, 1155
Hpy188III	TCNNGA	7 cut(s)	40, 116, 179, 356, 542, 589, 1027
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	2 cut(s)	774, 996
HpyAV	CCTTC	6 cut(s)	190, 635, 1134, 1184, 1227, 1303
HpyCH4III	ACNGT	2 cut(s)	445, 1345
HpyCH4V	TGCA	3 cut(s)	242, 618, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 1210, 1213, 1367
HpyF3I	CTNAG	2 cut(s)	432, 1362
Hsp92II	CATG	5 cut(s)	65, 740, 836, 914, 1011
HspAI	GCGC	5 cut(s)	211, 1184, 1211, 1243, 1253
Kpn2I	TCCGGA	1 cut(s)	39
KspI	CCGCGG	1 cut(s)	805
Kzo9I	GATC	4 cut(s)	254, 275, 969, 1365
LguI	GCTCTTC	1 cut(s)	419
LmnI	GCTCC	3 cut(s)	538, 1164, 1292
Lsp1109I	GCAGC	5 cut(s)	858, 880, 1216, 1225, 1307
LweI	GCATC	4 cut(s)	33, 251, 349, 1146
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	5 cut(s)	49, 190, 706, 1178, 1345
MalI	GATC	4 cut(s)	256, 277, 971, 1367
MboI	GATC	4 cut(s)	254, 275, 969, 1365
MboII	GAAGA	8 cut(s)	167, 216, 224, 406, 674, 1028, 1048, 1249
MfeI	CAATTG	1 cut(s)	602
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	1299
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	140
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	3 cut(s)	470, 759, 980
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	2 cut(s)	704, 804
MspI	CCGG	2 cut(s)	40, 668
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	602
MvnI	CGCG	4 cut(s)	804, 1184, 1211, 1243
MwoI	GCNNNNNNNGC	4 cut(s)	146, 1210, 1213, 1367
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	4 cut(s)	254, 275, 969, 1365
NlaIII	CATG	5 cut(s)	65, 740, 836, 914, 1011
NlaIV	GGNNCC	2 cut(s)	1297, 1298
NmeAIII	GCCGAG	1 cut(s)	1084
NmuCI	GTSAC	3 cut(s)	49, 1178, 1345
NspI	RCATGY	1 cut(s)	836
NspV	TTCGAA	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	3 cut(s)	367, 688, 996
PflMI	CCANNNNNTGG	1 cut(s)	1173
PkrI	GCNGC	5 cut(s)	873, 895, 1206, 1215, 1322
PshBI	ATTAAT	1 cut(s)	470
PspN4I	GGNNCC	2 cut(s)	1297, 1298
PspOMI	GGGCCC	1 cut(s)	1295
PspPI	GGNCC	3 cut(s)	843, 1295, 1296
PsuI	RGATCY	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	704
SacII	CCGCGG	1 cut(s)	805
SapI	GCTCTTC	1 cut(s)	419
SaqAI	TTAA	3 cut(s)	470, 759, 980
SatI	GCNGC	5 cut(s)	872, 894, 1205, 1214, 1321
Sau3AI	GATC	4 cut(s)	254, 275, 969, 1365
Sau96I	GGNCC	3 cut(s)	843, 1295, 1296
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	1299
SfaNI	GCATC	4 cut(s)	33, 251, 349, 1146
SfcI	CTRYAG	1 cut(s)	1274
Sfr303I	CCGCGG	1 cut(s)	805
SfuI	TTCGAA	1 cut(s)	625
SgrBI	CCGCGG	1 cut(s)	805
SinI	GGWCC	1 cut(s)	843
SsiI	CCGC	4 cut(s)	802, 804, 896, 1300
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	666
TaaI	ACNGT	2 cut(s)	445, 1345
TaqI	TCGA	5 cut(s)	115, 341, 625, 769, 994
TfiI	GAWTC	3 cut(s)	367, 688, 996
Tru1I	TTAA	3 cut(s)	470, 759, 980
Tru9I	TTAA	3 cut(s)	470, 759, 980
TscAI	CASTG	4 cut(s)	270, 450, 895, 1297
TseFI	GTSAC	3 cut(s)	49, 1178, 1345
TseI	GCWGC	5 cut(s)	871, 893, 1204, 1213, 1320
Tsp45I	GTSAC	3 cut(s)	49, 1178, 1345
TspDTI	ATGAA	4 cut(s)	78, 337, 834, 1029
TspRI	CASTG	4 cut(s)	270, 450, 895, 1297
Van91I	CCANNNNNTGG	1 cut(s)	1173
VpaK11BI	GGWCC	1 cut(s)	843
VspI	ATTAAT	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	1128
XapI	RAATTY	3 cut(s)	406, 1020, 1352
XceI	RCATGY	1 cut(s)	836
XmiI	GTMKAC	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.