Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Reverse (-)

23832073 .. 23836587

Gene Structure 4515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGAGAGTCGTGGAGAGAGTTGGTGGTGCTTGGGGGGCGGGAGTGTGGAGTGAATAAGAGAGGGAAAGAGAGGGAGAGATTGGCAGTGGCGGTGTTGGTGGTGGAGGAGATGGAGAGGGGAAAGAGAGAGCAGAACAAGAAGAAGAAGAAGAAGAAGAAGAGAGCCATGATCGAGAATCAGATGGAGAGAGATAGAGAAGGGAGGCAGTTGTTACCTCCCCAACCCCTTCCTAGTCGATATAGCCTTGCGGCTGATCACCTTCATCTCTTAGGTGCGTCATGGGCTGCGATTTTGGCAGCGACTATTTCACCCTTGAGTTACGACTCCGCTAGGGTCGTCTCCGTGGAGGGAGGAGATCTGATCTTGATTGGAAACGACATCCATCTTGGTTTTGGTGGCTGGCTGTTAGATGATGAGATTAGAGTGCTGCTGGAGGTGGGAATGATGGTGGTGCGACATGGTGGATCATGGCTGGAATTGCTGATGGAGGGTCGACGGGGTTGGCTGCCGGAGTCCACAATGGTTGTCTTTACAAGGAAGCAGAGATCTGTTTTTTTGGATTCCATCATGGCTCAAGTTTGGATCCATTTGGATCATCGTTTTGTAGATCTATGGTTCTGGATTTGGGATCCAGGCCACGGTGAGGCAAATGGTGCAACAAGAGCCCGAACAGTCAGTTTCATGCCCAAGATAAAGCATTTGCCATACCATGAGCTCTTAGGGAATGCTCCTTACATACTGGTCAAGAGTTGTATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

29.08

Weight (kDa)

9.36

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	496
AciI	CCGC	4 cut(s)	40, 92, 251, 330
AclWI	GGATC	6 cut(s)	475, 580, 593, 603, 626, 639
AfiI	CCNNNNNNNGG	2 cut(s)	641, 646
AgsI	TTSAA	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	1 cut(s)	718
AluI	AGCT	1 cut(s)	718
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	6 cut(s)	475, 580, 593, 603, 626, 639
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	4 cut(s)	287, 299, 430, 508
AsuHPI	GGTGA	3 cut(s)	251, 303, 656
BamHI	GGATCC	2 cut(s)	585, 631
BanII	GRGCYC	2 cut(s)	670, 720
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	4 cut(s)	274, 311, 417, 495
BccI	CCATC	6 cut(s)	106, 178, 393, 442, 481, 575
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	234, 333
BglII	AGATCT	3 cut(s)	358, 548, 610
BisI	GCNGC	5 cut(s)	252, 288, 300, 431, 509
BlsI	GCNGC	5 cut(s)	253, 289, 301, 432, 510
Bme1390I	CCNGG	1 cut(s)	636
BmiI	GGNNCC	2 cut(s)	587, 633
BmrFI	CCNGG	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	455
BpuEI	CTTGAG	2 cut(s)	337, 561
BsaJI	CCNNGG	2 cut(s)	345, 640
Bsc4I	CCNNNNNNNGG	2 cut(s)	641, 646
Bse1I	ACTGG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	345, 640
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	641, 646
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	2 cut(s)	122, 369
BseXI	GCAGC	4 cut(s)	274, 311, 417, 495
BshFI	GGCC	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	641, 646
BsmAI	GTCTC	1 cut(s)	346
BsmBI	CGTCTC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	1 cut(s)	639
Bsp1286I	GDGCHC	2 cut(s)	670, 720
BspACI	CCGC	4 cut(s)	40, 92, 251, 330
BspANI	GGCC	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	587, 633
BspPI	GGATC	6 cut(s)	475, 580, 593, 603, 626, 639
BsrI	ACTGG	1 cut(s)	747
BssECI	CCNNGG	2 cut(s)	345, 640
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	644, 676
Bst6I	CTCTTC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	271, 721
BstDSI	CCRYGG	2 cut(s)	345, 640
BstF5I	GGATG	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 284, 296, 481, 656, 665
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	634
BstV1I	GCAGC	4 cut(s)	274, 311, 417, 495
BstX2I	RGATCY	5 cut(s)	358, 548, 585, 610, 631
BstYI	RGATCY	5 cut(s)	358, 548, 585, 610, 631
BsuRI	GGCC	1 cut(s)	639
BtgI	CCRYGG	2 cut(s)	345, 640
BtsCI	GGATG	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	404
CseI	GACGC	1 cut(s)	267
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	7 cut(s)	169, 282, 461, 471, 571, 685, 713
DdeI	CTNAG	2 cut(s)	271, 721
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	718
Eco24I	GRGCYC	2 cut(s)	670, 720
Eco53kI	GAGCTC	1 cut(s)	718
EcoICRI	GAGCTC	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	670, 720
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	7 cut(s)	172, 285, 464, 474, 574, 688, 716
FatI	CATG	7 cut(s)	168, 281, 460, 470, 570, 684, 712
FauI	CCCGC	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	496
Fnu4HI	GCNGC	5 cut(s)	252, 288, 300, 431, 509
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	2 cut(s)	670, 720
Fsp4HI	GCNGC	5 cut(s)	252, 288, 300, 431, 509
FspBI	CTAG	2 cut(s)	234, 333
GluI	GCNGC	5 cut(s)	252, 288, 300, 431, 509
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	7 cut(s)	172, 285, 464, 474, 574, 688, 716
HincII	GTYRAC	1 cut(s)	497
HindII	GTYRAC	1 cut(s)	497
HinfI	GANTC	5 cut(s)	8, 178, 326, 515, 563
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	3 cut(s)	251, 303, 656
Hpy166II	GTNNAC	2 cut(s)	497, 519
Hpy188I	TCNGA	2 cut(s)	183, 363
Hpy188III	TCNNGA	4 cut(s)	175, 367, 622, 748
Hpy8I	GTNNAC	2 cut(s)	497, 519
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	3 cut(s)	194, 239, 272
HpyCH4III	ACNGT	2 cut(s)	644, 676
HpyCH4V	TGCA	1 cut(s)	659
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 284, 296, 481, 656, 665
HpyF3I	CTNAG	2 cut(s)	271, 721
Hsp92II	CATG	7 cut(s)	172, 285, 464, 474, 574, 688, 716
Ksp22I	TGATCA	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	736
LpnPI	CCDG	8 cut(s)	388, 419, 461, 525, 607, 621, 648, 728
Lsp1109I	GCAGC	4 cut(s)	274, 311, 417, 495
MaeI	CTAG	2 cut(s)	234, 333
MaeIII	GTNAC	2 cut(s)	213, 320
MboII	GAAGA	7 cut(s)	154, 157, 160, 163, 166, 169, 172
MflI	RGATCY	5 cut(s)	358, 548, 585, 610, 631
MhlI	GDGCHC	2 cut(s)	670, 720
MluCI	AATT	1 cut(s)	479
MlyI	GAGTC	3 cut(s)	17, 320, 524
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	6 cut(s)	37, 284, 296, 481, 656, 665
NlaIII	CATG	7 cut(s)	172, 285, 464, 474, 574, 688, 716
NlaIV	GGNNCC	2 cut(s)	587, 633
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	178, 563
PkrI	GCNGC	5 cut(s)	253, 289, 301, 432, 510
PleI	GAGTC	3 cut(s)	16, 320, 523
PpsI	GAGTC	3 cut(s)	16, 320, 523
Psp124BI	GAGCTC	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	587, 633
PsuI	RGATCY	5 cut(s)	358, 548, 585, 610, 631
SacI	GAGCTC	1 cut(s)	720
SalI	GTCGAC	1 cut(s)	495
SatI	GCNGC	5 cut(s)	252, 288, 300, 431, 509
SchI	GAGTC	3 cut(s)	17, 320, 524
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	670, 720
SetI	ASST	5 cut(s)	220, 264, 277, 441, 720
SmlI	CTYRAG	2 cut(s)	316, 576
SmoI	CTYRAG	2 cut(s)	316, 576
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	4 cut(s)	40, 92, 251, 330
SspMI	CTAG	2 cut(s)	234, 333
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	644, 676
TaqI	TCGA	3 cut(s)	174, 238, 496
TasI	AATT	1 cut(s)	479
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	178, 563
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	4 cut(s)	287, 299, 430, 508
TspDTI	ATGAA	2 cut(s)	254, 673
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	496
XspI	CTAG	2 cut(s)	234, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.