Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004823.1

Orthogroup ID

OG0001470

Physical Location & Seq

Genomic Coordinates Forward (+)

29911 .. 30315

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004823.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgctagctagaggtattcattggtgtgcttgggagaaactatgtaacagaaaagaggaagggggccttggttttcgggacttgagggcattcaatcaagccatgctagcgaaaactgtctggaggattttctgggggaaacattctctggtgagtaggctgcttcaagcaaaatacttacccgagacttgttttctgaatgcaacgctgggacttactccttctgccatttggaggggattattatgggggaaacaagttcttgatggtggatctagatggcgaattggtaatgggaagagagtgagaatcaaagaggatagatggttgccttccccagttgccttccccggttactttcaaggtatcgagtcacttacctatgcaggggaatatgaaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

134

Amino Acids

15.37

Weight (kDa)

9.89

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00310
fragaria_vesca	FvH4_1g30140 FvH4_3g05951 FvH4_3g07263 FvH4_4g08371 FvH4_4g17922 FvH4_5g08581 FvH4_6g37191
malus_domestica	MD08G1177900.v1.1
prunus_persica	Prupe.1G197300_v2.0.a1 Prupe.3G181300_v2.0.a1 Prupe.4G011200_v2.0.a1 Prupe.5G143900_v2.0.a1 Prupe.6G123900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0324011 RchiOBHm_Chr1g0349051 RchiOBHm_Chr5g0012551 RchiOBHm_Chr7g0182091
rosa_laevigata	RLG00000016534
rosa_multiflora	Rmu_co8418073.1_g000001 Rmu_co8492163.1_g000001 Rmu_sc0000131.1_g000007 Rmu_sc0000464.1_g000010 Rmu_sc0002667.1_g000017 Rmu_sc0003052.1_g000009 Rmu_sc0003124.1_g000011 Rmu_sc0004373.1_g000011 Rmu_sc0004823.1_g000011 Rmu_sc0005279.1_g000003 Rmu_sc0005307.1_g000012 Rmu_sc0005640.1_g000003 Rmu_sc0005933.1_g000002 Rmu_sc0013078.1_g000008 Rmu_sc0013453.1_g000003 Rmu_sc0014005.1_g000004 Rmu_sc0028625.1_g000001 Rmu_ssc0000267.1_g000010 Rmu_ssc0000342.1_g000022 Rmu_ssc0000421.1_g000082
rosa_roxburghii	Rroxscaffold_3G00252810 Rroxscaffold_6G00406990 Rroxscaffold_6G00410800
rosa_rugosa	Rorug02G0379900 Rorug03G0263800 Rorug05G0089800
rosa_samantha	Rh1AG217300 Rh1CG201700 Rh2BG225700 Rh2CG217800 Rh3BG268500
rosa_wichuraiana	Rw0G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	234, 387
AgsI	TTSAA	3 cut(s)	94, 167, 362
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	163
AsuNHI	GCTAGC	2 cut(s)	4, 106
AvaI	CYCGRG	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	3 cut(s)	260, 273, 318
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	4 cut(s)	5, 9, 107, 276
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	351
BmrI	ACTGGG	1 cut(s)	332
BmtI	GCTAGC	2 cut(s)	8, 110
BmuI	ACTGGG	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	67, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 387
Bse1I	ACTGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	67, 349
BseLI	CCNNNNNNNGG	2 cut(s)	234, 387
BseNI	ACTGG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	2 cut(s)	92, 225
BslI	CCNNNNNNNGG	2 cut(s)	234, 387
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	92, 225
BsmI	GAATGC	2 cut(s)	89, 205
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	65
BspOI	GCTAGC	2 cut(s)	8, 110
BspPI	GGATC	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	67, 349
BssMI	GATC	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	6, 108
BstKTI	GATC	1 cut(s)	275
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	6, 108
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	8, 66, 101, 160
CviKI_1	RGCY	4 cut(s)	8, 66, 101, 160
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	106
FaiI	YATR	5 cut(s)	43, 104, 247, 384, 396
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	92, 225
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	4 cut(s)	5, 9, 107, 276
GluI	GCNGC	1 cut(s)	161
GsaI	CCCAGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	351
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	2 cut(s)	309, 371
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	4 cut(s)	77, 121, 263, 276
HpyAV	CCTTC	5 cut(s)	53, 231, 342, 355, 392
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	203, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	272
LpnPI	CCDG	7 cut(s)	106, 118, 134, 194, 351, 364, 372
Lsp1109I	GCAGC	1 cut(s)	147
MaeI	CTAG	4 cut(s)	5, 9, 107, 276
MaeIII	GTNAC	3 cut(s)	44, 353, 372
MalI	GATC	1 cut(s)	274
MboI	GATC	1 cut(s)	272
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	1 cut(s)	272
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	6 cut(s)	5, 49, 78, 117, 228, 310
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	351
Mva1269I	GAATGC	2 cut(s)	89, 205
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	272
NheI	GCTAGC	2 cut(s)	4, 106
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	372
PctI	GAATGC	2 cut(s)	89, 205
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	24
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	351
SetI	ASST	5 cut(s)	10, 16, 367, 383, 403
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	1 cut(s)	285
SspMI	CTAG	4 cut(s)	5, 9, 107, 276
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	369
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	1 cut(s)	8
XbaI	TCTAGA	1 cut(s)	275
XspI	CTAG	4 cut(s)	5, 9, 107, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.