FvH4_1g15400

Domain of unknown function (DUF4413)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001193
Physical Location & Seq
Reverse (-)
8736374 .. 8737381
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15400.t1

Sequence Viewer

Length: 441 bp
ATGAGCTCTATTAGCATTTTAGTCATTCCAGTATCTACAGTTGCCTCAGAGTCAGCATTTAGTACTGGTGGCCGGATTGTGAGCCCACATCGGAACCGACTTCATTCAAACACATTAGAGGCATCGATGTGTGGTTGGGATTGGTTGTGGAGTGAGTTACGAGATGCTCCTAGCACATTAGAGGATGATATTGATGTTGATGAGGAGTCTTGCCATGATACTGATGTTGAATTTACTCCACATCAAACGGATGATACTAATACACTTTATGTTCCAACCGAGCCTTTGAGCCTTCTTGGTGAAGTGCGTTTTGGTGCCATTTGGGAGGCGGCTAGCGGGATGTCAGAGTTGTTGTTAGTTGTTACTGTCTTGTTGTCGATGGGCTTAGCATGTGGAAGTCTGGCGGTTATGTCCGGTCTAAGCGCTGTTGAATCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

147

Amino Acids

15.69

Weight (kDa)

4.11

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 5 - 49 5.3e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 3 cut(s) 329, 336, 404
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 230
AfaI GTAC 1 cut(s) 64
AfeI AGCGCT 1 cut(s) 424
AgsI TTSAA 3 cut(s) 108, 230, 431
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw21I GWGCWC 1 cut(s) 8
Aor51HI AGCGCT 1 cut(s) 424
AoxI GGCC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 311
AsuNHI GCTAGC 1 cut(s) 332
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 2 cut(s) 8, 86
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 373
BfaI CTAG 2 cut(s) 171, 333
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 426
BisI GCNGC 1 cut(s) 330
BlpI GCTNAGC 1 cut(s) 385
BlsI GCNGC 1 cut(s) 331
BmcAI AGTACT 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 95, 316
BmsI GCATC 2 cut(s) 131, 154
BmtI GCTAGC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 385
Bsa29I ATCGAT 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 413
Bse1I ACTGG 2 cut(s) 29, 70
BseCI ATCGAT 1 cut(s) 125
BseGI GGATG 3 cut(s) 190, 256, 345
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 29, 70
BseRI GAGGAG 1 cut(s) 218
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 314
BshVI ATCGAT 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 73, 414
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 8, 86
Bsp1720I GCTNAGC 1 cut(s) 385
BspACI CCGC 3 cut(s) 329, 336, 404
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 59
BspDI ATCGAT 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 95, 316
BspOI GCTAGC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 314
BsrI ACTGG 2 cut(s) 29, 70
Bst4CI ACNGT 2 cut(s) 40, 367
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 3 cut(s) 46, 385, 419
BstF5I GGATG 3 cut(s) 190, 256, 345
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 1 cut(s) 425
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 125
BsuRI GGCC 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 125
BtsCI GGATG 3 cut(s) 190, 256, 345
Cac8I GCNNGC 1 cut(s) 334
CfoI GCGC 1 cut(s) 425
ClaI ATCGAT 1 cut(s) 125
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 215, 390
CviJI RGCY 7 cut(s) 6, 72, 84, 283, 291, 332, 384
CviKI_1 RGCY 7 cut(s) 6, 72, 84, 283, 291, 332, 384
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 3 cut(s) 46, 385, 419
EaeI YGGCCR 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 8, 86
Eco47III AGCGCT 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 8, 86
FaeI CATG 2 cut(s) 218, 393
FaiI YATR 4 cut(s) 216, 270, 391, 410
FatI CATG 2 cut(s) 214, 389
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 3 cut(s) 197, 263, 352
FriOI GRGCYC 2 cut(s) 8, 86
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 2 cut(s) 171, 333
GlaI GCGC 1 cut(s) 424
GluI GCNGC 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 73, 414
HhaI GCGC 1 cut(s) 425
Hin1II CATG 2 cut(s) 218, 393
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HinfI GANTC 3 cut(s) 50, 206, 431
HpaII CCGG 2 cut(s) 73, 414
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 3 cut(s) 49, 93, 346
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 2 cut(s) 40, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 3 cut(s) 46, 385, 419
Hsp92II CATG 2 cut(s) 218, 393
HspAI GCGC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 42, 51, 86, 386, 427
LweI GCATC 2 cut(s) 131, 154
MaeI CTAG 2 cut(s) 171, 333
MaeIII GTNAC 2 cut(s) 156, 361
MhlI GDGCHC 2 cut(s) 8, 86
MluCI AATT 1 cut(s) 230
MlyI GAGTC 2 cut(s) 59, 215
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 5 cut(s) 55, 112, 175, 196, 319
MslI CAYNNNNRTG 1 cut(s) 127
MspI CCGG 2 cut(s) 73, 414
MwoI GCNNNNNNNGC 1 cut(s) 12
NheI GCTAGC 1 cut(s) 332
NlaIII CATG 2 cut(s) 218, 393
NlaIV GGNNCC 2 cut(s) 95, 316
NspI RCATGY 1 cut(s) 393
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 2 cut(s) 58, 214
PpsI GAGTC 2 cut(s) 58, 214
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 95, 316
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 127
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 1 cut(s) 330
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 2 cut(s) 59, 215
SduI GDGCHC 2 cut(s) 8, 86
SetI ASST 1 cut(s) 8
SfaNI GCATC 2 cut(s) 131, 154
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 127
Sse9I AATT 1 cut(s) 230
SsiI CCGC 3 cut(s) 329, 336, 404
SspMI CTAG 2 cut(s) 171, 333
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 2 cut(s) 40, 367
TaqI TCGA 2 cut(s) 125, 377
TasI AATT 1 cut(s) 230
TatI WGTACW 1 cut(s) 62
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 263
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 393
XspI CTAG 2 cut(s) 171, 333
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.