RLG00000009116

BED zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001193
Physical Location & Seq
Reverse (-)
46874825 .. 46879882
5058 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009116

Sequence Viewer

Length: 348 bp
ATGCAATTTGCCATGCTTGATTTGATTTTCAGGAATATGGAAGATATGTCATATAGCTGTGCTAATAAAGAAATAATGGATGAGGATGTGGAACAAAGTGTTCCACGCAAAAGAAAGAGGAAAGCAGCAGTATGGGATAATTTTGAAGTAAAAGTGATCAAGGGGGAAGAGAAAGCAATTTGTAAGCATTGCGGCAAGATCCTAAGTGCAAAGTCTTCAAATGGAACTAATTCCTTGAATTTACATGTTGTGGGACAGAACACATCATCCCATACTGCTGAGTATGGGAAAAATTTGGAAAAGAAAGATGACGAGGAAGAGAGAAGTATGTTTAAACAGACGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.17

Weight (kDa)

6.83

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-BED PF02892 51 - 83 6.4e-06 BED zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 2 cut(s) 238, 292
AcyI GRCGYC 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 3 cut(s) 146, 219, 238
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
AlwI GGATC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 2 cut(s) 238, 292
Asp700I GAANNNNTTC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 137
BclI TGATCA 1 cut(s) 156
BisI GCNGC 2 cut(s) 126, 193
BlsI GCNGC 2 cut(s) 127, 194
BpiI GAAGAC 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 187
BseGI GGATG 3 cut(s) 85, 91, 266
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 137
BslFI GGGAC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 156, 198
BspACI CCGC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 271
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 187
BssMI GATC 2 cut(s) 156, 198
BssNI GRCGYC 1 cut(s) 341
Bst6I CTCTTC 2 cut(s) 162, 312
BstACI GRCGYC 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 203, 279
BstF5I GGATG 3 cut(s) 85, 91, 266
BstKTI GATC 2 cut(s) 159, 201
BstMBI GATC 2 cut(s) 156, 198
BstNSI RCATGY 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BtsCI GGATG 3 cut(s) 85, 91, 266
CviAII CATG 2 cut(s) 13, 245
CviJI RGCY 1 cut(s) 57
CviKI_1 RGCY 1 cut(s) 57
DdeI CTNAG 2 cut(s) 203, 279
DpnI GATC 2 cut(s) 158, 200
DpnII GATC 2 cut(s) 156, 198
DraI TTTAAA 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 162, 312
EarI CTCTTC 2 cut(s) 162, 312
FaeI CATG 2 cut(s) 16, 248
FaqI GGGAC 1 cut(s) 267
FatI CATG 2 cut(s) 12, 244
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 126, 193
FokI GGATG 3 cut(s) 92, 98, 253
Fsp4HI GCNGC 2 cut(s) 126, 193
GluI GCNGC 2 cut(s) 126, 193
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 2 cut(s) 16, 248
Hpy188III TCNNGA 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 4, 209
HpyF3I CTNAG 2 cut(s) 203, 279
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 2 cut(s) 16, 248
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 2 cut(s) 156, 198
LpnPI CCDG 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 137
MalI GATC 2 cut(s) 158, 200
MboI GATC 2 cut(s) 156, 198
MboII GAAGA 4 cut(s) 53, 179, 207, 329
MflI RGATCY 1 cut(s) 198
MluCI AATT 6 cut(s) 5, 139, 177, 229, 238, 292
MnlI CCTC 3 cut(s) 76, 111, 307
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 1 cut(s) 333
MssI GTTTAAAC 1 cut(s) 334
NdeII GATC 2 cut(s) 156, 198
NlaIII CATG 2 cut(s) 16, 248
NspI RCATGY 1 cut(s) 248
PciI ACATGT 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 229
PkrI GCNGC 2 cut(s) 127, 194
PmeI GTTTAAAC 1 cut(s) 334
PscI ACATGT 1 cut(s) 244
PsuI RGATCY 1 cut(s) 198
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 126, 193
Sau3AI GATC 2 cut(s) 156, 198
SetI ASST 1 cut(s) 59
SgeI CNNG 9 cut(s) 25, 29, 43, 117, 172, 208, 247, 257, 325
Sse9I AATT 6 cut(s) 5, 139, 177, 229, 238, 292
SsiI CCGC 1 cut(s) 192
TasI AATT 6 cut(s) 5, 139, 177, 229, 238, 292
TauI GCSGC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseI GCWGC 1 cut(s) 125
XapI RAATTY 2 cut(s) 238, 292
XceI RCATGY 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.