Rh4BG144800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001193
Physical Location & Seq
Forward (+)
25841859 .. 25844074
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG144800.1

Sequence Viewer

Length: 348 bp
ATGGATAATACCCATGGTACCCAAATTTTACCCAGATACCCAAAATTTTGGTTTTTGAAAATTAAAGCCGCGATTCAATTTATGGTTGTGCCTTCTCAACCCTATCTCTTCGCTCTCCATTCTTCAGTCTCAATGCCGGAGAATCTCAACCTCGCCGGAGATCGGATTCTCCAGCGTAACCGGCGAAAATCCAATCATCGGTCTCTAGTTTGCGCTGCAAGCAAGAGTGAACCGAAGGAAGATGTGTCATATAGCTGTGCTAATAATGACATAGTGGATGAGGATGTGGAGCAAAGTGTTCCACGCAAAAGGAGGAAAGCAGCAGTATGGGGTACAATTTCGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.13

Weight (kDa)

9.74

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 1 cut(s) 71
AciI CCGC 1 cut(s) 69
AcsI RAATTY 2 cut(s) 24, 44
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 2 cut(s) 19, 334
AfiI CCNNNNNNNGG 2 cut(s) 162, 198
AgsI TTSAA 2 cut(s) 58, 77
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 133, 207
ApeKI GCWGC 2 cut(s) 215, 320
ApoI RAATTY 2 cut(s) 24, 44
Asp718I GGTACC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 341
BanI GGYRCC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 202, 332
BcoDI GTCTC 2 cut(s) 133, 207
BfaI CTAG 1 cut(s) 206
BisI GCNGC 3 cut(s) 69, 216, 321
BlsI GCNGC 3 cut(s) 70, 217, 322
BmiI GGNNCC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 155
Bpu14I TTCGAA 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 198
Bse118I RCCGGY 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 283, 289
BseLI CCNNNNNNNGG 2 cut(s) 162, 198
BseXI GCAGC 2 cut(s) 202, 332
Bsh1236I CGCG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 17
BsiSI CCGG 3 cut(s) 137, 156, 181
BslI CCNNNNNNNGG 2 cut(s) 162, 198
BsmAI GTCTC 2 cut(s) 133, 207
Bso31I GGTCTC 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 341
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 1 cut(s) 69
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 220
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 2 cut(s) 283, 289
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 2 cut(s) 133, 207
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 181, 219
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 202, 332
BstXI CCANNNNNNTGG 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 283, 289
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 180
Csp6I GTAC 2 cut(s) 18, 333
CviAII CATG 1 cut(s) 14
CviJI RGCY 2 cut(s) 68, 255
CviKI_1 RGCY 2 cut(s) 68, 255
CviQI GTAC 2 cut(s) 18, 333
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 1 cut(s) 17
FaiI YATR 6 cut(s) 15, 83, 250, 252, 272, 328
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 69, 216, 321
FokI GGATG 2 cut(s) 290, 296
Fsp4HI GCNGC 3 cut(s) 69, 216, 321
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 69, 216, 321
GsuI CTGGAG 1 cut(s) 155
HapII CCGG 3 cut(s) 137, 156, 181
HhaI GCGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 3 cut(s) 73, 142, 166
HpaII CCGG 3 cut(s) 137, 156, 181
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 102, 229
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 219
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 1 cut(s) 213
KpnI GGTACC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 5 cut(s) 46, 150, 169, 185, 194
Lsp1109I GCAGC 2 cut(s) 202, 332
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 100, 114, 251
MluCI AATT 5 cut(s) 24, 44, 60, 77, 336
MnlI CCTC 3 cut(s) 161, 274, 306
MseI TTAA 1 cut(s) 63
MspI CCGG 3 cut(s) 137, 156, 181
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 181, 219
NcoI CCATGG 1 cut(s) 13
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 341
PfeI GAWTC 3 cut(s) 73, 142, 166
PkrI GCNGC 3 cut(s) 70, 217, 322
PspN4I GGNNCC 1 cut(s) 19
RsaI GTAC 2 cut(s) 19, 334
RsaNI GTAC 2 cut(s) 18, 333
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 3 cut(s) 69, 216, 321
Sau3AI GATC 1 cut(s) 160
SetI ASST 2 cut(s) 153, 257
SfuI TTCGAA 1 cut(s) 341
Sse9I AATT 5 cut(s) 24, 44, 60, 77, 336
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 13
TaqI TCGA 1 cut(s) 341
TaqII GACCGA 1 cut(s) 189
TasI AATT 5 cut(s) 24, 44, 60, 77, 336
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 3 cut(s) 73, 142, 166
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseI GCWGC 2 cut(s) 215, 320
XapI RAATTY 2 cut(s) 24, 44
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.