Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

19968309 .. 19981327

Gene Structure 13019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG210900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCCTCTTCACAATCAACCACCACTAATGTTGATGCTGGAACGATGGAGAATCAATCGCCTCCAATTCCTATCACATCAACAGAGAATTCGACCATTGCTGCACCACCAACTGAGAACCAGGAGAACTCAACACCAACAGGTACGAATGAGTTGACTAAAGTAAACCGCCCAGGGTTTATGAGAGCACCAAAGTCGGTTGTATGGGATCATTTTGAAAAACAGGTAATTGGTGGTAAAAGAAAAGCTGTGTGCAACCATTCATCAAATTCTGAAGAATCTAGAAGAGTTAGTGTTGAAAATGATACCGAGTGTAATGGTGAAGATGAGGGATATGGGCGGCCACCAACCCCCGTCTGCGGTATCGATCTTCTGAGTAATAATGTAGGGAGACCCCGACTTCAGTGTGTAGAGGATCAGATCCATTTCTTCGACGGGTTTAGAGACTGGTTGCAGTGCGCCAAATTAAACTTCTTGCACCGGCTCTTTCAAGACAAAACACTGTCTCTTAGCTTTTGTCCCAACGACCGGTGGAACCGGCACAAGAAAGTTAAAAATAGAGGTATAAATCGAAGCCATTCATTGGCATTGAAGATCAATTCGAACAGAGTTAGGTTGACTAAAGAAATGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.83

Weight (kDa)

8.56

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	583
AciI	CCGC	3 cut(s)	169, 340, 360
AclWI	GGATC	3 cut(s)	216, 415, 423
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	88, 268
AcuI	CTGAAG	2 cut(s)	294, 386
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	3 cut(s)	359, 528, 583
AgeI	ACCGGT	1 cut(s)	528
AgsI	TTSAA	4 cut(s)	218, 299, 491, 592
AjnI	CCWGG	2 cut(s)	120, 172
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	2 cut(s)	248, 513
AluI	AGCT	2 cut(s)	248, 513
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	3 cut(s)	385, 438, 510
AlwI	GGATC	3 cut(s)	216, 415, 423
AoxI	GGCC	2 cut(s)	3, 341
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	88, 268
AsiGI	ACCGGT	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	2 cut(s)	122, 174
BcoDI	GTCTC	3 cut(s)	385, 438, 510
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	102, 341
BlsI	GCNGC	2 cut(s)	103, 342
Bme1390I	CCNGG	2 cut(s)	122, 174
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	2 cut(s)	122, 174
BmsI	GCATC	2 cut(s)	25, 622
Bpu14I	TTCGAA	1 cut(s)	602
Bsa29I	ATCGAT	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	172, 173
BsaWI	WCCGGW	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 528, 583
Bse118I	RCCGGY	3 cut(s)	480, 528, 537
Bse1I	ACTGG	1 cut(s)	452
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	122, 174
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	172, 173
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	3 cut(s)	359, 528, 583
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	105, 365
BseNI	ACTGG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	5, 343
BshTI	ACCGGT	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	3 cut(s)	481, 529, 538
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	359, 528, 583
BsmAI	GTCTC	3 cut(s)	385, 438, 510
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	2 cut(s)	5, 343
Bso31I	GGTCTC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	5 cut(s)	208, 367, 415, 420, 594
BspACI	CCGC	3 cut(s)	169, 340, 360
BspANI	GGCC	2 cut(s)	5, 343
BspCNI	CTCAG	2 cut(s)	106, 366
BspDI	ATCGAT	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	536
BspPI	GGATC	3 cut(s)	216, 415, 423
BspT104I	TTCGAA	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	3 cut(s)	480, 528, 537
BsrI	ACTGG	1 cut(s)	452
BssAI	RCCGGY	3 cut(s)	480, 528, 537
BssECI	CCNNGG	2 cut(s)	172, 173
BssMI	GATC	5 cut(s)	208, 367, 415, 420, 594
Bst2UI	CCWGG	2 cut(s)	122, 174
Bst4CI	ACNGT	1 cut(s)	504
Bst6I	CTCTTC	2 cut(s)	13, 280
BstBI	TTCGAA	1 cut(s)	602
BstDEI	CTNAG	3 cut(s)	114, 374, 509
BstF5I	GGATG	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	5 cut(s)	211, 370, 418, 423, 597
BstMAI	GTCTC	3 cut(s)	385, 438, 510
BstMBI	GATC	5 cut(s)	208, 367, 415, 420, 594
BstMCI	CGRYCG	1 cut(s)	529
BstNI	CCWGG	2 cut(s)	122, 174
BstSCI	CCNGG	2 cut(s)	120, 172
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	5, 343
BsuTUI	ATCGAT	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	3 cut(s)	410, 461, 500
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	3 cut(s)	480, 528, 537
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	144
CspAI	ACCGGT	1 cut(s)	528
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviJI	RGCY	6 cut(s)	5, 248, 343, 484, 513, 576
CviKI_1	RGCY	6 cut(s)	5, 248, 343, 484, 513, 576
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	3 cut(s)	114, 374, 509
DpnI	GATC	5 cut(s)	210, 369, 417, 422, 596
DpnII	GATC	5 cut(s)	208, 367, 415, 420, 594
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	13, 280
EarI	CTCTTC	2 cut(s)	13, 280
Eco31I	GGTCTC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	294, 386
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	120, 172
FaiI	YATR	4 cut(s)	182, 205, 336, 566
FaqI	GGGAC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	102, 341
Fsp4HI	GCNGC	2 cut(s)	102, 341
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	2 cut(s)	102, 341
HaeIII	GGCC	2 cut(s)	5, 343
HapII	CCGG	3 cut(s)	481, 529, 538
HhaI	GCGC	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HincII	GTYRAC	2 cut(s)	156, 618
HindII	GTYRAC	2 cut(s)	156, 618
HinfI	GANTC	2 cut(s)	52, 278
HpaII	CCGG	3 cut(s)	481, 529, 538
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	3 cut(s)	156, 166, 618
Hpy188I	TCNGA	3 cut(s)	274, 375, 420
Hpy188III	TCNNGA	2 cut(s)	282, 491
Hpy8I	GTNNAC	3 cut(s)	156, 166, 618
Hpy99I	CGWCG	1 cut(s)	437
HpyCH4III	ACNGT	1 cut(s)	504
HpyCH4V	TGCA	4 cut(s)	104, 255, 454, 478
HpyF3I	CTNAG	3 cut(s)	114, 374, 509
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	5 cut(s)	208, 367, 415, 420, 594
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	25, 622
MaeI	CTAG	1 cut(s)	282
MalI	GATC	5 cut(s)	210, 369, 417, 422, 596
MboI	GATC	5 cut(s)	208, 367, 415, 420, 594
MboII	GAAGA	6 cut(s)	287, 297, 335, 362, 421, 604
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	6 cut(s)	66, 88, 228, 268, 464, 598
MnlI	CCTC	5 cut(s)	16, 72, 322, 406, 554
MroXI	GAANNNNTTC	1 cut(s)	577
MseI	TTAA	2 cut(s)	467, 552
MspI	CCGG	3 cut(s)	481, 529, 538
MspR9I	CCNGG	2 cut(s)	122, 174
MvaI	CCWGG	2 cut(s)	122, 174
NdeII	GATC	5 cut(s)	208, 367, 415, 420, 594
NlaIV	GGNNCC	1 cut(s)	536
NspV	TTCGAA	1 cut(s)	602
PasI	CCCWGGG	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	52, 278
PflMI	CCANNNNNTGG	1 cut(s)	583
PinAI	ACCGGT	1 cut(s)	528
PkrI	GCNGC	2 cut(s)	103, 342
Psp6I	CCWGG	2 cut(s)	120, 172
PspGI	CCWGG	2 cut(s)	120, 172
PspN4I	GGNNCC	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	467, 552
SatI	GCNGC	2 cut(s)	102, 341
Sau3AI	GATC	5 cut(s)	208, 367, 415, 420, 594
ScrFI	CCNGG	2 cut(s)	122, 174
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	6 cut(s)	145, 228, 250, 515, 565, 617
SfaNI	GCATC	2 cut(s)	25, 622
SfuI	TTCGAA	1 cut(s)	602
Sse9I	AATT	6 cut(s)	66, 88, 228, 268, 464, 598
SsiI	CCGC	3 cut(s)	169, 340, 360
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	120, 172
TaaI	ACNGT	1 cut(s)	504
TaqI	TCGA	5 cut(s)	92, 366, 432, 571, 602
TasI	AATT	6 cut(s)	66, 88, 228, 268, 464, 598
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	52, 278
Tru1I	TTAA	2 cut(s)	467, 552
Tru9I	TTAA	2 cut(s)	467, 552
TscAI	CASTG	3 cut(s)	410, 461, 507
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	252, 570
TspRI	CASTG	3 cut(s)	410, 461, 507
Van91I	CCANNNNNTGG	1 cut(s)	583
XapI	RAATTY	2 cut(s)	88, 268
XbaI	TCTAGA	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.