Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

70606188 .. 70606922

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTTCTGCACCAATCAATGATCTTGCTGAAAATGGTGAGAATCAAGTTCCTGCAACAGCTGAGAATGAGAACAATTCTACACCAATCGAGAATGAGAGCAATTCTACACCAATTGAGAATGAGAACAACTCATCACCTGATACAACTACTAACATACGTCAAGAGAGAAAGCCAAGATCTAAAGCATGGGATCATTTTGAAAAAAAAGTAGTTGGTGATAAAAGAAAAGCTATATGTCATCATTGCAAGAGTATGTTATCGGCAGAGAAAAACCATGGTACGACACATTTACATGATCATTTGAAGTCTTGTCTGTATAAAAGGCAAAGAAAGCTAGATCAGTCCATGTTGAATCCTACAAGGTCTACTGATGGTTCTACTAAGCTTGGCACTTATAGCTTTGATCCAAACAATGCTAGGAGGGAACTTGGAAATATGATTATTCTTCATGAGTATCCTTTGGCTATTGTTGATCATGTTGGATTTAGAAGGTATTCTTTTGAGTTACAGCCATTATTTAAGGTTCCTACTCGAAACACAATCAGAAGTGATATATTTAAGATTTTTGAAGTTGAAAAGGAGAAAACTATGAAGCTAATGGATGCTAACAAGAGTAGGATTGCTATCACAACTGACATGTGGACATCTAATAATCAAAAGAGGGGATTTATGGCTATTACATCACATTTCATTGATGAATCATGGATTTTGCAAAGTCGTCTCTTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

244

Amino Acids

28.11

Weight (kDa)

9.06

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	201, 401
AfaI	GTAC	1 cut(s)	283
AflII	CTTAAG	1 cut(s)	727
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	203, 307, 355, 572, 578
AluBI	AGCT	6 cut(s)	62, 233, 337, 388, 402, 598
AluI	AGCT	6 cut(s)	62, 233, 337, 388, 402, 598
Alw26I	GTCTC	1 cut(s)	728
AlwI	GGATC	2 cut(s)	201, 401
Asp700I	GAANNNNTTC	1 cut(s)	496
AsuHPI	GGTGA	3 cut(s)	50, 129, 230
BccI	CCATC	1 cut(s)	368
BciVI	GTATCC	1 cut(s)	468
BclI	TGATCA	2 cut(s)	298, 475
BcoDI	GTCTC	1 cut(s)	728
BfaI	CTAG	2 cut(s)	338, 420
BfrI	CTTAAG	1 cut(s)	727
BfuI	GTATCC	1 cut(s)	468
BglII	AGATCT	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	528
BmsI	GCATC	1 cut(s)	595
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BsaBI	GATNNNNATC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	626
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	610
BseJI	GATNNNNATC	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	728
BsmBI	CGTCTC	1 cut(s)	728
Bsp143I	GATC	7 cut(s)	22, 179, 193, 298, 340, 406, 475
Bsp19I	CCATGG	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	528
BspPI	GGATC	2 cut(s)	201, 401
BspTI	CTTAAG	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	7 cut(s)	22, 179, 193, 298, 340, 406, 475
BssT1I	CCWWGG	1 cut(s)	277
BstAFI	CTTAAG	1 cut(s)	727
BstDEI	CTNAG	2 cut(s)	63, 384
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	610
BstKTI	GATC	7 cut(s)	25, 182, 196, 301, 343, 409, 478
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	7 cut(s)	22, 179, 193, 298, 340, 406, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 399
BstNSI	RCATGY	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	610
CciI	TCATGA	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	8 cut(s)	189, 278, 296, 349, 452, 479, 640, 705
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	2 cut(s)	63, 384
DpnI	GATC	7 cut(s)	24, 181, 195, 300, 342, 408, 477
DpnII	GATC	7 cut(s)	22, 179, 193, 298, 340, 406, 475
Eco130I	CCWWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	728
FaeI	CATG	8 cut(s)	192, 281, 299, 352, 455, 482, 643, 708
FalI	AAGNNNNNCTT	2 cut(s)	484, 516
FatI	CATG	8 cut(s)	188, 277, 295, 348, 451, 478, 639, 704
FbaI	TGATCA	2 cut(s)	298, 475
FblI	GTMKAC	1 cut(s)	368
FokI	GGATG	1 cut(s)	617
FspBI	CTAG	2 cut(s)	338, 420
Hin1II	CATG	8 cut(s)	192, 281, 299, 352, 455, 482, 643, 708
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	3 cut(s)	43, 355, 701
HphI	GGTGA	3 cut(s)	50, 129, 230
Hpy166II	GTNNAC	2 cut(s)	369, 645
Hpy188I	TCNGA	1 cut(s)	548
Hpy188III	TCNNGA	3 cut(s)	91, 164, 452
Hpy8I	GTNNAC	2 cut(s)	369, 645
HpyAV	CCTTC	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	11, 56, 249, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 399
HpyF3I	CTNAG	2 cut(s)	63, 384
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	8 cut(s)	192, 281, 299, 352, 455, 482, 643, 708
Ksp22I	TGATCA	2 cut(s)	298, 475
Kzo9I	GATC	7 cut(s)	22, 179, 193, 298, 340, 406, 475
LpnPI	CCDG	2 cut(s)	66, 153
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	338, 420
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	7 cut(s)	24, 181, 195, 300, 342, 408, 477
MboI	GATC	7 cut(s)	22, 179, 193, 298, 340, 406, 475
MboII	GAAGA	1 cut(s)	440
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	3 cut(s)	76, 103, 114
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	2 cut(s)	417, 657
MroXI	GAANNNNTTC	1 cut(s)	496
MseI	TTAA	3 cut(s)	522, 561, 728
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	727
MunI	CAATTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	334, 399
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	7 cut(s)	22, 179, 193, 298, 340, 406, 475
NlaIII	CATG	8 cut(s)	192, 281, 299, 352, 455, 482, 643, 708
NlaIV	GGNNCC	1 cut(s)	528
NspI	RCATGY	1 cut(s)	643
PagI	TCATGA	1 cut(s)	451
PciI	ACATGT	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	43, 355, 701
PscI	ACATGT	1 cut(s)	639
PspN4I	GGNNCC	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	522, 561, 728
Sau3AI	GATC	7 cut(s)	22, 179, 193, 298, 340, 406, 475
SfaNI	GCATC	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
Sse9I	AATT	3 cut(s)	76, 103, 114
SspMI	CTAG	2 cut(s)	338, 420
StyI	CCWWGG	1 cut(s)	277
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	90, 535
TasI	AATT	3 cut(s)	76, 103, 114
TfiI	GAWTC	3 cut(s)	43, 355, 701
Tru1I	TTAA	3 cut(s)	522, 561, 728
Tru9I	TTAA	3 cut(s)	522, 561, 728
TspDTI	ATGAA	4 cut(s)	440, 608, 682, 714
Vha464I	CTTAAG	1 cut(s)	727
XceI	RCATGY	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	2 cut(s)	338, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.