Rroxscaffold_4G00308380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001193
Physical Location & Seq
Forward (+)
29896320 .. 29903589
7270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308380.1

Sequence Viewer

Length: 321 bp
ATGTCGTTGTTGTGCGGTGGTGGAGGTTGTTGTGGCCAAGTCATTGGCGACGGCAGCGGGGATGAACTCGGAGTGTACGCAGCATCAAATTCTGAAGAATCTAGAAGAGCTAGTGTTGAAAATGATACTGAGTGTAATGGTGAAGATGAGCACCAAACTAAAACGCAAGGACTCTCATCTAAACAACTTAGAGCAGCTCCAACAGACTACCTATTCATGTTCCTTAGCAATTCGGGCGGTGGGCGGAGCCAGAAATTTAAGCCGACCGAGGCACGGATGTTGTTTGTACCCACATTTGCATGTCCACTCAGACATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.28

Weight (kDa)

5.27

Isoelectric Point (pI)

63.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 15, 57, 237, 244
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 2 cut(s) 88, 254
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 77, 288
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 3 cut(s) 110, 197, 318
AluI AGCT 3 cut(s) 110, 197, 318
Alw21I GWGCWC 1 cut(s) 153
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 3 cut(s) 54, 80, 194
ApoI RAATTY 2 cut(s) 88, 254
AsuHPI GGTGA 1 cut(s) 152
BalI TGGCCA 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 66, 92, 206
BceAI ACGGC 1 cut(s) 67
BfaI CTAG 2 cut(s) 102, 111
BisI GCNGC 3 cut(s) 55, 81, 195
BlsI GCNGC 3 cut(s) 56, 82, 196
BmiI GGNNCC 1 cut(s) 248
BmsI GCATC 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 67, 282
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 66, 92, 206
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 273
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 153
BspACI CCGC 4 cut(s) 15, 57, 237, 244
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 121, 321
BspLI GGNNCC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 129, 188, 224, 308
BstF5I GGATG 2 cut(s) 67, 282
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 2 cut(s) 54, 234
BstNSI RCATGY 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 66, 92, 206
BstXI CCANNNNNNTGG 1 cut(s) 44
BsuRI GGCC 1 cut(s) 36
BtsCI GGATG 2 cut(s) 67, 282
Csp6I GTAC 2 cut(s) 76, 287
CviAII CATG 2 cut(s) 217, 300
CviJI RGCY 6 cut(s) 36, 110, 197, 249, 262, 318
CviKI_1 RGCY 6 cut(s) 36, 110, 197, 249, 262, 318
CviQI GTAC 2 cut(s) 76, 287
DdeI CTNAG 4 cut(s) 129, 188, 224, 308
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 114
FaeI CATG 2 cut(s) 220, 303
FaiI YATR 3 cut(s) 218, 301, 315
FatI CATG 2 cut(s) 216, 299
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 3 cut(s) 55, 81, 195
FokI GGATG 2 cut(s) 74, 289
Fsp4HI GCNGC 3 cut(s) 55, 81, 195
FspBI CTAG 2 cut(s) 102, 111
GluI GCNGC 3 cut(s) 55, 81, 195
HaeIII GGCC 1 cut(s) 36
Hin1II CATG 2 cut(s) 220, 303
HinfI GANTC 2 cut(s) 98, 171
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 76, 305
Hpy188I TCNGA 3 cut(s) 71, 94, 311
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 2 cut(s) 76, 305
Hpy99I CGWCG 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 234
HpyF3I CTNAG 4 cut(s) 129, 188, 224, 308
Hsp92II CATG 2 cut(s) 220, 303
LguI GCTCTTC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 202, 246
LpnPI CCDG 1 cut(s) 263
Lsp1109I GCAGC 3 cut(s) 66, 92, 206
LweI GCATC 1 cut(s) 92
MaeI CTAG 2 cut(s) 102, 111
MboII GAAGA 3 cut(s) 107, 117, 155
MhlI GDGCHC 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 3 cut(s) 88, 229, 254
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 2 cut(s) 17, 262
Mox20I TGGCCA 1 cut(s) 36
MscI TGGCCA 1 cut(s) 36
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 298
Msp20I TGGCCA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 54, 234
NlaIII CATG 2 cut(s) 220, 303
NlaIV GGNNCC 1 cut(s) 248
NspI RCATGY 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 56, 82, 196
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 248
RsaI GTAC 2 cut(s) 77, 288
RsaNI GTAC 2 cut(s) 76, 287
RseI CAYNNNNRTG 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 3 cut(s) 55, 81, 195
SchI GAGTC 1 cut(s) 165
SduI GDGCHC 1 cut(s) 153
SetI ASST 5 cut(s) 28, 112, 199, 213, 320
SfaNI GCATC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 298
Sse9I AATT 3 cut(s) 88, 229, 254
SsiI CCGC 4 cut(s) 15, 57, 237, 244
SspMI CTAG 2 cut(s) 102, 111
TaqII GACCGA 1 cut(s) 281
TasI AATT 3 cut(s) 88, 229, 254
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 3 cut(s) 54, 80, 194
TspDTI ATGAA 2 cut(s) 78, 205
TspGWI ACGGA 1 cut(s) 289
XapI RAATTY 2 cut(s) 88, 254
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 303
XspI CTAG 2 cut(s) 102, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.