Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

20776060 .. 20781913

Gene Structure 5854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28542.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGGAAGAAGTGGACTCTAGAATCTGATATTTATGAAGTGATAGAAATGGCAAAGAAAATGAAAGAAAAATTTGAGAAGTATTGGGATGTTATTGGAACCGTTGCCACTATTCAAGATCCTCGGTATAAGCTCAAGTTGATTGAGTTTTACTTCAAGCAAGTTTATCCTCTTAGGGTTGCGTTGGAAGTAGACAGAGTCAAGAAGCTTGCATATGACTTGGTCAAGGAGTATAGTTCTTGTGCTATATCTCATGCATCTAATAACTCATCTTTGATTGAAAGTACAAGGCCGAGTGATAATGATTTAGGGGATGACCACATGGATGCTTATGATGCCTTTGTCTCTGGCTCTAGTAAGGATACTGACAAGTCTGACTTGGAGAGGTATTTGGATGAGACTGTTTTGCCGAGGGTAAATGATAAGGAGTTTGATGTATTATACTGGTGGAAGACAAGTGGGATGAAATATCCAACTTTGTGTAAGGTTGCTCGTGACATTTTAGCCATTCCAGTATCTACAGTTGCCTCAGAGTCGGTATTTAGTACTGGTGGACGGATTGTGAGCCCACATCGGAACCGACTTCATTCAAACACATTAGAGGCATTGATGTGTGGTCGGGATTGGTTGTGTAGTGAGTTACGAGATGCTCCTAGCACATTAGAGGATGATATTGATGCTGATGAGGAGTCTTGTCATGATAGTGATGTTGAATTTACTCCACATCAAATGGATGATACTAATACACGTAGAGGAAGAGCAGCTAGAACACGTTCTTCTCCTTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

264

Amino Acids

30.15

Weight (kDa)

5.11

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	4 - 78	1.1e-13	hAT-like transposase, RNase-H fold
Dimer_Tnp_hAT	PF05699	126 - 210	1.2e-31	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	71, 713
AfaI	GTAC	2 cut(s)	286, 547
AflIII	ACRYGT	2 cut(s)	746, 770
AgsI	TTSAA	5 cut(s)	116, 157, 281, 591, 713
AluBI	AGCT	3 cut(s)	133, 208, 764
AluI	AGCT	3 cut(s)	133, 208, 764
Alw26I	GTCTC	2 cut(s)	349, 392
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	2 cut(s)	71, 713
Asp700I	GAANNNNTTC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	569
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	773
BciVI	GTATCC	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	349, 392
BfaI	CTAG	4 cut(s)	20, 354, 654, 765
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	763
BmcAI	AGTACT	1 cut(s)	547
BmiI	GGNNCC	2 cut(s)	100, 578
BmsI	GCATC	5 cut(s)	266, 316, 325, 637, 667
BpiI	GAAGAC	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	122, 410
Bse1I	ACTGG	3 cut(s)	449, 512, 553
BseDI	CCNNGG	2 cut(s)	122, 410
BseGI	GGATG	7 cut(s)	94, 319, 331, 400, 468, 673, 739
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	3 cut(s)	449, 512, 553
BseRI	GAGGAG	1 cut(s)	701
BseXI	GCAGC	1 cut(s)	773
BshFI	GGCC	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	349, 392
BsnI	GGCC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	2 cut(s)	100, 578
BspPI	GGATC	1 cut(s)	113
BspQI	GCTCTTC	1 cut(s)	751
BsrI	ACTGG	3 cut(s)	449, 512, 553
BssECI	CCNNGG	2 cut(s)	122, 410
BssMI	GATC	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	103, 403, 523
Bst6I	CTCTTC	1 cut(s)	751
BstBAI	YACGTR	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	173, 529
BstF5I	GGATG	7 cut(s)	94, 319, 331, 400, 468, 673, 739
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	2 cut(s)	349, 392
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	773
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	7 cut(s)	94, 319, 331, 400, 468, 673, 739
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	285, 546
CviAII	CATG	3 cut(s)	254, 322, 698
CviJI	RGCY	7 cut(s)	133, 208, 292, 351, 506, 567, 764
CviKI_1	RGCY	7 cut(s)	133, 208, 292, 351, 506, 567, 764
CviQI	GTAC	2 cut(s)	285, 546
DdeI	CTNAG	2 cut(s)	173, 529
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	751
EarI	CTCTTC	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	569
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	569
FaeI	CATG	3 cut(s)	257, 325, 701
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	3 cut(s)	253, 321, 697
FauNDI	CATATG	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	762
FokI	GGATG	7 cut(s)	101, 326, 338, 407, 475, 680, 746
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	762
FspBI	CTAG	4 cut(s)	20, 354, 654, 765
GluI	GCNGC	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	257, 325, 701
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	5 cut(s)	16, 23, 198, 533, 689
Hpy166II	GTNNAC	3 cut(s)	15, 193, 554
Hpy188I	TCNGA	4 cut(s)	28, 376, 532, 576
Hpy188III	TCNNGA	6 cut(s)	20, 116, 202, 494, 620, 698
Hpy8I	GTNNAC	3 cut(s)	15, 193, 554
HpyCH4III	ACNGT	3 cut(s)	103, 403, 523
HpyCH4IV	ACGT	2 cut(s)	748, 772
HpyCH4V	TGCA	2 cut(s)	212, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	2 cut(s)	173, 529
HpySE526I	ACGT	2 cut(s)	748, 772
Hsp92II	CATG	3 cut(s)	257, 325, 701
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	751
LmnI	GCTCC	1 cut(s)	655
LpnPI	CCDG	4 cut(s)	333, 430, 525, 534
Lsp1109I	GCAGC	1 cut(s)	773
LweI	GCATC	5 cut(s)	266, 316, 325, 637, 667
MaeI	CTAG	4 cut(s)	20, 354, 654, 765
MaeII	ACGT	2 cut(s)	748, 772
MaeIII	GTNAC	2 cut(s)	494, 639
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	4 cut(s)	19, 463, 768, 768
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	2 cut(s)	71, 713
MlyI	GAGTC	4 cut(s)	10, 207, 542, 698
MmeI	TCCRAC	2 cut(s)	165, 497
MnlI	CCTC	9 cut(s)	132, 180, 378, 405, 538, 595, 658, 679, 746
Mph1103I	ATGCAT	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	772
MslI	CAYNNNNRTG	3 cut(s)	324, 610, 702
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	3 cut(s)	257, 325, 701
NlaIV	GGNNCC	2 cut(s)	100, 578
NmeAIII	GCCGAG	2 cut(s)	318, 435
NmuCI	GTSAC	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	259
PagI	TCATGA	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	23
PflFI	GACNNNGTC	2 cut(s)	197, 221
PkrI	GCNGC	1 cut(s)	763
PleI	GAGTC	4 cut(s)	10, 206, 541, 697
PpsI	GAGTC	4 cut(s)	10, 206, 541, 697
Ppu21I	YACGTR	1 cut(s)	749
PspN4I	GGNNCC	2 cut(s)	100, 578
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	2 cut(s)	197, 221
RsaI	GTAC	2 cut(s)	286, 547
RsaNI	GTAC	2 cut(s)	285, 546
RseI	CAYNNNNRTG	3 cut(s)	324, 610, 702
SapI	GCTCTTC	1 cut(s)	751
SatI	GCNGC	1 cut(s)	762
Sau3AI	GATC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	4 cut(s)	10, 207, 542, 698
SduI	GDGCHC	1 cut(s)	569
SetI	ASST	7 cut(s)	135, 210, 389, 489, 751, 766, 775
SfaNI	GCATC	5 cut(s)	266, 316, 325, 637, 667
SfcI	CTRYAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	3 cut(s)	324, 610, 702
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	71, 713
SspMI	CTAG	4 cut(s)	20, 354, 654, 765
TaaI	ACNGT	3 cut(s)	103, 403, 523
TaiI	ACGT	2 cut(s)	751, 775
TasI	AATT	2 cut(s)	71, 713
TatI	WGTACW	2 cut(s)	284, 545
TfiI	GAWTC	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	4 cut(s)	51, 77, 479, 575
TspGWI	ACGGA	1 cut(s)	571
Tth111I	GACNNNGTC	2 cut(s)	197, 221
XapI	RAATTY	2 cut(s)	71, 713
XbaI	TCTAGA	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	772
XspI	CTAG	4 cut(s)	20, 354, 654, 765
ZrmI	AGTACT	1 cut(s)	547
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.