Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Reverse (-)

32474589 .. 32477239

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGATTTCTGCCAGTGTCCAAGCCCAAGAGACCAAATCTGCAAGGGAATTGTATCCAACCTTCCCAGCCATGTTAGCAGCTTCATCACTCCGCCACCGCTGTGTATAAATATGGAACCGACATACACAAAGGCTAGTGGAGCAGAACCAATTGAAATCTCAAATGAAAATGAGATAGACTCAACGCTTCAAGGTGATGCAGATAGTAAGAAGAGGAGACAGATTTCAGCTATTTGGAATCATTTTACAAAACAAGCAGATGGAAAGTGTATTTGCAAGTATTGTAGTAAAGTCATAGCTGGTGGGGGAAAAATAGGGACACATGTTTTACATGGACATCATAAATCATGCCCCGAGTTGAAAAATAAAAGAAAAAAGGGTCATGGGTCTGCATCTGTCAAGGTTGGAGGGTATGATTTCGATGAGTTTGAGTCAAGAAAATTGCTTGCACACATGATTATAAAACATGAGTATCCTTTGCGCATGGTTGAGCATGATGGATTCGGGGAGTTTTGTTACTCTTTACAACCATTGTTTAGAGTTGTTTCTCGATTCACGATCAAGAGAGATATCATGAAGATCTATGAGCACGAGAAAGAGAGGACAATGCAATTGTTGAGTATGAATAGTAGTAGAATTGCAATCACAACAGACATGTGGACTTCAAACAACCAAAAGAGGGGTTTCATGACCGTGACCGCACATTTCATAGATGATGCTTGGGTCTTGAATAGTTGGCTTGTGAGGTTAGTTATATTAATCGTACCCTTTTTTTTTAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

261

Amino Acids

29.76

Weight (kDa)

9.0

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
Acc16I	TGCGCA	1 cut(s)	482
AciI	CCGC	3 cut(s)	92, 98, 699
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflIII	ACRYGT	2 cut(s)	322, 654
AgsI	TTSAA	5 cut(s)	155, 191, 361, 666, 730
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	3 cut(s)	81, 230, 299
AluI	AGCT	3 cut(s)	81, 230, 299
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	2 cut(s)	24, 211
Ama87I	CYCGRG	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	78
AseI	ATTAAT	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	455, 488
BarI	GAAGNNNNNNTAC	2 cut(s)	45, 77
BauI	CACGAG	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	2 cut(s)	254, 491
BciVI	GTATCC	2 cut(s)	64, 483
BcoDI	GTCTC	2 cut(s)	24, 211
BfaI	CTAG	1 cut(s)	135
BfuI	GTATCC	2 cut(s)	64, 483
BglII	AGATCT	1 cut(s)	579
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	3 cut(s)	187, 401, 706
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BsaI	GGTCTC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse1I	ACTGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	2 cut(s)	24, 211
BsmFI	GGGAC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	2 cut(s)	558, 579
BspACI	CCGC	3 cut(s)	92, 98, 699
BspHI	TCATGA	2 cut(s)	573, 687
BspLI	GGNNCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	558, 579
BssSI	CACGAG	1 cut(s)	590
Bst2BI	CACGAG	1 cut(s)	590
Bst4CI	ACNGT	1 cut(s)	694
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	2 cut(s)	561, 582
BstMAI	GTCTC	2 cut(s)	24, 211
BstMBI	GATC	2 cut(s)	558, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 140
BstNSI	RCATGY	2 cut(s)	326, 658
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
BsuI	GTATCC	2 cut(s)	64, 483
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	2 cut(s)	573, 687
CfoI	GCGC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	764
CviJI	RGCY	7 cut(s)	24, 69, 81, 134, 230, 299, 739
CviKI_1	RGCY	7 cut(s)	24, 69, 81, 134, 230, 299, 739
CviQI	GTAC	1 cut(s)	764
DpnI	GATC	2 cut(s)	560, 581
DpnII	GATC	2 cut(s)	558, 579
DraI	TTTAAA	1 cut(s)	778
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	571
Eco88I	CYCGRG	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	571
FaqI	GGGAC	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	135
FspI	TGCGCA	1 cut(s)	482
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	483
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	5 cut(s)	179, 238, 431, 501, 552
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188III	TCNNGA	7 cut(s)	435, 549, 556, 562, 574, 688, 727
Hpy8I	GTNNAC	1 cut(s)	660
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4V	TGCA	7 cut(s)	42, 200, 276, 392, 449, 610, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 140
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	558, 579
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	3 cut(s)	26, 79, 285
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	3 cut(s)	187, 401, 706
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	515, 694
MalI	GATC	2 cut(s)	560, 581
MboI	GATC	2 cut(s)	558, 579
MboII	GAAGA	2 cut(s)	223, 589
MfeI	CAATTG	2 cut(s)	150, 611
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	5 cut(s)	48, 150, 440, 611, 636
MlyI	GAGTC	2 cut(s)	173, 440
MmeI	TCCRAC	2 cut(s)	81, 385
MnlI	CCTC	5 cut(s)	207, 401, 594, 672, 738
MseI	TTAA	2 cut(s)	758, 777
MslI	CAYNNNNRTG	2 cut(s)	100, 692
MspA1I	CMGCKG	1 cut(s)	100
MunI	CAATTG	2 cut(s)	150, 611
MwoI	GCNNNNNNNGC	2 cut(s)	75, 140
NdeII	GATC	2 cut(s)	558, 579
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	694
NsbI	TGCGCA	1 cut(s)	482
NspI	RCATGY	2 cut(s)	326, 658
OliI	CACNNNNGTG	1 cut(s)	100
PagI	TCATGA	2 cut(s)	573, 687
PciI	ACATGT	2 cut(s)	322, 654
PfeI	GAWTC	3 cut(s)	238, 501, 552
PkrI	GCNGC	1 cut(s)	80
PleI	GAGTC	2 cut(s)	173, 439
PpsI	GAGTC	2 cut(s)	173, 439
PscI	ACATGT	2 cut(s)	322, 654
PshBI	ATTAAT	1 cut(s)	758
PsiI	TTATAA	1 cut(s)	461
PspFI	CCCAGC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	579
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
RseI	CAYNNNNRTG	2 cut(s)	100, 692
SaqAI	TTAA	2 cut(s)	758, 777
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	558, 579
SchI	GAGTC	2 cut(s)	173, 440
SduI	GDGCHC	1 cut(s)	591
SetI	ASST	7 cut(s)	63, 83, 196, 232, 301, 405, 749
SfaNI	GCATC	3 cut(s)	187, 401, 706
SmiMI	CAYNNNNRTG	2 cut(s)	100, 692
Sse9I	AATT	5 cut(s)	48, 150, 440, 611, 636
SsiI	CCGC	3 cut(s)	92, 98, 699
SspMI	CTAG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	694
TaqI	TCGA	2 cut(s)	420, 550
TasI	AATT	5 cut(s)	48, 150, 440, 611, 636
TfiI	GAWTC	3 cut(s)	238, 501, 552
Tru1I	TTAA	2 cut(s)	758, 777
Tru9I	TTAA	2 cut(s)	758, 777
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	6 cut(s)	73, 180, 590, 638, 676, 697
TspRI	CASTG	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	758
XceI	RCATGY	2 cut(s)	326, 658
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.