Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001193

Physical Location & Seq

Genomic Coordinates Forward (+)

7980329 .. 7983617

Gene Structure 3289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCGTTATTCATGATCGAGAAAAGTCCAGGGAGAAACTCAGGAAGGTGTGATAAAAGCAGAGTCATGCATGAAACGGCTAAGCTAAGACCAGCTTTTACATGCAGACTGGAAGGTGGAAAGTGCGAGTCAGAGAGACTCCAATGGAAGGTGGCGAGTGCCAAGTCGATATATCTTTCATGGTTCCAGTTGAAGCCATTGAACTGGGTAGTCACCACGTGTCCCTGGGCTTTGGTTGTCTGGGGTTCGTTGGTGGTTTGCACCATTAAAGAGGTAGGGTTGTTTATTTTCAAGGGAGGTTATGCCGAAATTTTTGGTAAATTCTCTTTTGAAGTGAACCCCGCAAGGTTTACTTCAGATTTCAGGGTGAAATCCGGGATGGGTCCTGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.82

Weight (kDa)

9.6

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001193)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15400 FvH4_1g23531 FvH4_1g28482 FvH4_1g28542 FvH4_2g14281 FvH4_2g14281 FvH4_3g13351 FvH4_3g33583 FvH4_3g33584 FvH4_4g15594 FvH4_4g15661 FvH4_6g37061 FvH4_6g37061 FvH4_6g37061
rosa_chinensis	RchiOBHm_Chr6g0268811
rosa_laevigata	RLG00000009116 RLG00000009803 RLG00000023112 RLG00000029863
rosa_multiflora	Rmu_sc0000840.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004660 Rroxscaffold_1G00017280 Rroxscaffold_2G00146270 Rroxscaffold_4G00308380 Rroxscaffold_7G00176640
rosa_rugosa	Rorug02G0012000 Rorug03G0320900 Rorug05G0035700
rosa_samantha	Rh2AG080600 Rh2AG204500 Rh2AG272900 Rh2CG207800 Rh2DG079600 Rh2DG210900 Rh3BG262200 Rh3CG359000 Rh4BG049500 Rh4BG144800 Rh4CG020200 Rh5AG158800 Rh5AG237200 Rh5AG393600 Rh5AG424400 Rh5BG158100 Rh5CG259700 Rh5DG158300 Rh6BG111000 Rh7DG303500
rosa_wichuraiana	Rw2G006620 Rw2G006630 Rw2G020590 Rw3G028600 Rw4G009220 Rw5G014170 Rw5G039990 Rw6G018560 Rw7G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	309, 320
AcuI	CTGAAG	1 cut(s)	339
AcvI	CACGTG	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	193, 202, 292, 332
AjnI	CCWGG	2 cut(s)	28, 224
AluBI	AGCT	2 cut(s)	85, 95
AluI	AGCT	2 cut(s)	85, 95
Alw26I	GTCTC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	309, 320
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	205, 379
AvaII	GGWCC	1 cut(s)	383
BbrPI	CACGTG	1 cut(s)	219
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	2 cut(s)	30, 226
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	130
BlpI	GCTNAGC	1 cut(s)	81
Bme1390I	CCNGG	3 cut(s)	30, 226, 376
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	185, 384
BmrFI	CCNGG	3 cut(s)	30, 226, 376
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	29, 224, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	114, 187, 209
BseBI	CCWGG	2 cut(s)	30, 226
BseDI	CCNNGG	3 cut(s)	29, 224, 225
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	3 cut(s)	114, 187, 209
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	185, 384
BsrI	ACTGG	3 cut(s)	114, 187, 209
BssECI	CCNNGG	3 cut(s)	29, 224, 225
BssMI	GATC	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	30, 226
BstBAI	YACGTR	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	40, 81, 86
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	15
BstNI	CCWGG	2 cut(s)	30, 226
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	28, 224, 374
BstXI	CCANNNNNNTGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	384
CciI	TCATGA	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	383
CviAII	CATG	5 cut(s)	13, 67, 71, 102, 180
CviJI	RGCY	5 cut(s)	80, 85, 95, 196, 230
CviKI_1	RGCY	5 cut(s)	80, 85, 95, 196, 230
DdeI	CTNAG	3 cut(s)	40, 81, 86
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DraIII	CACNNNGTG	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	339
Eco72I	CACGTG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	28, 224
EcoT22I	ATGCAT	1 cut(s)	72
FaeI	CATG	5 cut(s)	16, 70, 74, 105, 183
FaiI	YATR	7 cut(s)	14, 68, 72, 103, 172, 181, 303
FalI	AAGNNNNNCTT	4 cut(s)	79, 111, 337, 369
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	5 cut(s)	12, 66, 70, 101, 179
FauI	CCCGC	1 cut(s)	349
FokI	GGATG	1 cut(s)	391
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	5 cut(s)	16, 70, 74, 105, 183
HinfI	GANTC	3 cut(s)	63, 128, 138
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	2 cut(s)	205, 379
Hpy166II	GTNNAC	2 cut(s)	337, 351
Hpy188I	TCNGA	2 cut(s)	133, 358
Hpy188III	TCNNGA	4 cut(s)	13, 19, 42, 386
Hpy8I	GTNNAC	2 cut(s)	337, 351
HpyAV	CCTTC	3 cut(s)	39, 107, 142
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	3 cut(s)	70, 105, 261
HpyF3I	CTNAG	3 cut(s)	40, 81, 86
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	5 cut(s)	16, 70, 74, 105, 183
Kzo9I	GATC	1 cut(s)	15
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MluCI	AATT	2 cut(s)	309, 320
MlyI	GAGTC	3 cut(s)	72, 132, 137
MnlI	CCTC	2 cut(s)	265, 290
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	3 cut(s)	30, 226, 376
MvaI	CCWGG	2 cut(s)	30, 226
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	5 cut(s)	16, 70, 74, 105, 183
NlaIV	GGNNCC	2 cut(s)	185, 384
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	1 cut(s)	105
PagI	TCATGA	1 cut(s)	12
PasI	CCCWGGG	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	374
PleI	GAGTC	3 cut(s)	71, 132, 136
PmaCI	CACGTG	1 cut(s)	219
PmlI	CACGTG	1 cut(s)	219
PpsI	GAGTC	3 cut(s)	71, 132, 136
Ppu21I	YACGTR	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	28, 224
PspCI	CACGTG	1 cut(s)	219
PspGI	CCWGG	2 cut(s)	28, 224
PspN4I	GGNNCC	2 cut(s)	185, 384
PspPI	GGNCC	1 cut(s)	383
PspPPI	RGGWCCY	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	3 cut(s)	72, 132, 137
ScrFI	CCNGG	3 cut(s)	30, 226, 376
SetI	ASST	9 cut(s)	50, 87, 97, 118, 153, 221, 276, 301, 350
SinI	GGWCC	1 cut(s)	383
Sse9I	AATT	2 cut(s)	309, 320
SsiI	CCGC	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	28, 224, 374
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	18, 167
TasI	AATT	2 cut(s)	309, 320
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	87, 168
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	2 cut(s)	309, 320
XceI	RCATGY	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.